RNA–Protein interactions for RNA: ENST00000412568.6

PTPRF-204, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 5

Gene PTPRF, Length 4,154 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-204ENST00000412568 OR1N2Q8NGR9 330 aa8.99□□□□□ -0.97
PTPRF-204ENST00000412568 C8orf46Q8TAG6 207 aa8.99□□□□□ -0.97
PTPRF-204ENST00000412568 C2orf88Q9BSF0 95 aa8.99□□□□□ -0.97
PTPRF-204ENST00000412568 PHLDA3Q9Y5J5 127 aa8.99□□□□□ -0.97
PTPRF-204ENST00000412568 CHD3Q12873 2000 aaKnown RBP8.99□□□□□ -0.97
PTPRF-204ENST00000412568 TANC2Q9HCD6 1990 aa8.99□□□□□ -0.97
PTPRF-204ENST00000412568 ITGB1BP1O14713 200 aa8.99□□□□□ -0.97
PTPRF-204ENST00000412568 FBLN7Q53RD9 439 aa8.99□□□□□ -0.97
PTPRF-204ENST00000412568 CIARTQ8N365 385 aaPredicted RBP8.99□□□□□ -0.97
PTPRF-204ENST00000412568 FN1P02751 2386 aaKnown RBP8.99□□□□□ -0.97
PTPRF-204ENST00000412568 IGKV2-40A0A087WW87 121 aaPredicted RBP8.98□□□□□ -0.97
PTPRF-204ENST00000412568 M0R1W7 72 aa8.98□□□□□ -0.97
PTPRF-204ENST00000412568 IGKV2D-40P01614 121 aaPredicted RBP8.98□□□□□ -0.97
PTPRF-204ENST00000412568 LCNL1Q6ZST4 164 aa8.98□□□□□ -0.97
PTPRF-204ENST00000412568 BEND2Q8NDZ0 799 aa8.98□□□□□ -0.97
PTPRF-204ENST00000412568 Q8TAT8 98 aa8.98□□□□□ -0.97
PTPRF-204ENST00000412568 ZNF414Q96IQ9 312 aa8.98□□□□□ -0.97
PTPRF-204ENST00000412568 MEGF9Q9H1U4 602 aa8.98□□□□□ -0.97
PTPRF-204ENST00000412568 NDUFA4L2Q9NRX3 87 aa8.98□□□□□ -0.97
PTPRF-204ENST00000412568 H3BUT2 72 aa8.98□□□□□ -0.97
PTPRF-204ENST00000412568 ZNF833PQ6ZTB9 187 aa8.98□□□□□ -0.97
PTPRF-204ENST00000412568 C5orf30Q96GV9 206 aa8.98□□□□□ -0.97
PTPRF-204ENST00000412568 RITA1Q96K30 269 aa8.98□□□□□ -0.97
PTPRF-204ENST00000412568 A0A0G2JLM5 398 aa8.98□□□□□ -0.97
PTPRF-204ENST00000412568 A0A1B0GUS0 222 aa8.98□□□□□ -0.97
PTPRF-204ENST00000412568 PFN1P07737 140 aaKnown RBP8.98□□□□□ -0.97
PTPRF-204ENST00000412568 FOXL1Q12952 345 aa8.98□□□□□ -0.97
PTPRF-204ENST00000412568 RPP21Q9H633 154 aaKnown RBP8.98□□□□□ -0.97
PTPRF-204ENST00000412568 EML5Q05BV3 1969 aa8.98□□□□□ -0.97
PTPRF-204ENST00000412568 DSCAMO60469 2012 aa8.98□□□□□ -0.97
PTPRF-204ENST00000412568 IZUMO1RA6ND01 250 aa8.98□□□□□ -0.97
PTPRF-204ENST00000412568 IGHV2-70P01814 119 aa8.98□□□□□ -0.97
PTPRF-204ENST00000412568 MAP1LC3AQ9H492 121 aa8.98□□□□□ -0.97
PTPRF-204ENST00000412568 NACAE9PAV3 2078 aa8.97□□□□□ -0.97
PTPRF-204ENST00000412568 PVRIGQ6DKI7 326 aa8.97□□□□□ -0.97
PTPRF-204ENST00000412568 TRAV9-2A0A087WT02 112 aa8.97□□□□□ -0.97
PTPRF-204ENST00000412568 MINOS1Q5TGZ0 78 aa8.97□□□□□ -0.97
PTPRF-204ENST00000412568 NAA38Q9BRA0 125 aaKnown RBP8.97□□□□□ -0.97
PTPRF-204ENST00000412568 PSG8Q9UQ74 426 aa8.97□□□□□ -0.97
PTPRF-204ENST00000412568 MINOS1-NBL1R4GNA1 71 aa8.97□□□□□ -0.97
PTPRF-204ENST00000412568 ATP6V0E1O15342 81 aa8.97□□□□□ -0.97
PTPRF-204ENST00000412568 PRSS2P07478 247 aa8.97□□□□□ -0.97
PTPRF-204ENST00000412568 DEFB104AQ8WTQ1 72 aa8.97□□□□□ -0.97
PTPRF-204ENST00000412568 FNDC4Q9H6D8 234 aaPredicted RBP8.97□□□□□ -0.97
PTPRF-204ENST00000412568 TMEM160Q9NX00 188 aa8.97□□□□□ -0.97
PTPRF-204ENST00000412568 MOB4Q9Y3A3 225 aa8.97□□□□□ -0.97
PTPRF-204ENST00000412568 SPCS1Q9Y6A9 102 aa8.97□□□□□ -0.97
PTPRF-204ENST00000412568 PRRC2AP48634 2157 aaKnown RBP8.97□□□□□ -0.97
PTPRF-204ENST00000412568 MGAQ8IWI9 3026 aa8.96□□□□□ -0.97
PTPRF-204ENST00000412568 NDUFB8O95169 186 aa8.96□□□□□ -0.97
PTPRF-204ENST00000412568 IGLV2-14P01704 120 aa8.96□□□□□ -0.97
PTPRF-204ENST00000412568 SSBP2P81877 361 aaPredicted RBP8.96□□□□□ -0.97
PTPRF-204ENST00000412568 PAX8Q06710 450 aa8.96□□□□□ -0.97
PTPRF-204ENST00000412568 ZNF114Q8NC26 417 aa8.96□□□□□ -0.97
PTPRF-204ENST00000412568 NUDT10Q8NFP7 164 aa8.96□□□□□ -0.97
PTPRF-204ENST00000412568 NUDT11Q96G61 164 aa8.96□□□□□ -0.97
PTPRF-204ENST00000412568 CELSR3Q9NYQ7 3312 aa8.96□□□□□ -0.97
PTPRF-204ENST00000412568 TRAV9-1A0A075B6T8 112 aa8.96□□□□□ -0.98
PTPRF-204ENST00000412568 SAPCD1Q5SSQ6 148 aa8.96□□□□□ -0.98
PTPRF-204ENST00000412568 EYSQ5T1H1 3165 aa8.96□□□□□ -0.98
PTPRF-204ENST00000412568 A0A1B0GUT8 65 aa8.96□□□□□ -0.98
PTPRF-204ENST00000412568 A8MWP6 167 aa8.96□□□□□ -0.98
PTPRF-204ENST00000412568 RIPPLY3P57055 190 aa8.96□□□□□ -0.98
PTPRF-204ENST00000412568 GUSBP1Q15486 140 aa8.96□□□□□ -0.98
PTPRF-204ENST00000412568 BEX4Q9NWD9 120 aaPredicted RBP8.96□□□□□ -0.98
PTPRF-204ENST00000412568 SMIM13P0DJ93 91 aa8.95□□□□□ -0.98
PTPRF-204ENST00000412568 RAB9AP51151 201 aa8.95□□□□□ -0.98
PTPRF-204ENST00000412568 FAM120AOSQ5T036 256 aa8.95□□□□□ -0.98
PTPRF-204ENST00000412568 FAM71F2Q6NXP2 309 aa8.95□□□□□ -0.98
PTPRF-204ENST00000412568 FMC1Q96HJ9 113 aa8.95□□□□□ -0.98
PTPRF-204ENST00000412568 NPFFR1Q9GZQ6 430 aa8.95□□□□□ -0.98
PTPRF-204ENST00000412568 PROP1O75360 226 aa8.95□□□□□ -0.98
PTPRF-204ENST00000412568 MSMBP08118 114 aa8.95□□□□□ -0.98
PTPRF-204ENST00000412568 ZNF562Q6V9R5 426 aa8.95□□□□□ -0.98
PTPRF-204ENST00000412568 OTORQ9NRC9 128 aa8.95□□□□□ -0.98
PTPRF-204ENST00000412568 ACANP16112 2415 aa8.95□□□□□ -0.98
PTPRF-204ENST00000412568 SNHG12Q9BXW3 62 aa8.95□□□□□ -0.98
PTPRF-204ENST00000412568 KAAG1Q9UBP8 84 aa8.95□□□□□ -0.98
PTPRF-204ENST00000412568 TMEM238LA0A1B0GVL6 79 aa8.94□□□□□ -0.98
PTPRF-204ENST00000412568 A6NJY4 79 aa8.94□□□□□ -0.98
PTPRF-204ENST00000412568 IGHV2-5P01817 119 aa8.94□□□□□ -0.98
PTPRF-204ENST00000412568 SFTA2Q6UW10 78 aa8.94□□□□□ -0.98
PTPRF-204ENST00000412568 ITLN2Q8WWU7 325 aaPredicted RBP8.94□□□□□ -0.98
PTPRF-204ENST00000412568 PRELID3AQ96N28 172 aa8.94□□□□□ -0.98
PTPRF-204ENST00000412568 TRGV9Q99603 122 aa8.94□□□□□ -0.98
PTPRF-204ENST00000412568 CENPEQ02224 2701 aa8.94□□□□□ -0.98
PTPRF-204ENST00000412568 A0A1B0GWB2 263 aa8.94□□□□□ -0.98
PTPRF-204ENST00000412568 TYMSP04818 313 aa8.94□□□□□ -0.98
PTPRF-204ENST00000412568 RNASE4P34096 147 aaKnown RBP8.94□□□□□ -0.98
PTPRF-204ENST00000412568 FAM159AQ6UWV7 190 aa8.94□□□□□ -0.98
PTPRF-204ENST00000412568 NCOR1P1Q9H4R4 102 aa8.94□□□□□ -0.98
PTPRF-204ENST00000412568 SNRPD3P62318 126 aaKnown RBP8.94□□□□□ -0.98
PTPRF-204ENST00000412568 AMMECR1LQ6DCA0 310 aa8.94□□□□□ -0.98
PTPRF-204ENST00000412568 IL17RELQ6ZVW7 336 aa8.94□□□□□ -0.98
PTPRF-204ENST00000412568 PRSS22Q9GZN4 317 aa8.94□□□□□ -0.98
PTPRF-204ENST00000412568 TRBV20OR9-2A0A075B6H5 130 aa8.94□□□□□ -0.98
PTPRF-204ENST00000412568 UBE2E1P51965 193 aa8.94□□□□□ -0.98
PTPRF-204ENST00000412568 Q71RC1 249 aaPredicted RBP8.94□□□□□ -0.98
PTPRF-204ENST00000412568 GNB1LQ9BYB4 327 aa8.94□□□□□ -0.98
PTPRF-204ENST00000412568 IGHV2-70DA0A0C4DH43 119 aa8.93□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 98.7 ms