RNA–Protein interactions for RNA: ENST00000409809.5

COL6A3-206, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 8,916 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-206ENST00000409809 TRPT1Q86TN4 253 aaKnown RBP10.63□□□□□ -0.71
COL6A3-206ENST00000409809 PRIMA1Q86XR5 153 aa10.63□□□□□ -0.71
COL6A3-206ENST00000409809 ZNF784Q8NCA9 323 aaPredicted RBP10.63□□□□□ -0.71
COL6A3-206ENST00000409809 TMEM243Q9BU79 118 aa10.63□□□□□ -0.71
COL6A3-206ENST00000409809 NCR2O95944 276 aa10.63□□□□□ -0.71
COL6A3-206ENST00000409809 PLAURQ03405 335 aa10.63□□□□□ -0.71
COL6A3-206ENST00000409809 OOSP1A8MZH6 123 aa10.63□□□□□ -0.71
COL6A3-206ENST00000409809 RPL36AP83881 106 aaKnown RBP10.63□□□□□ -0.71
COL6A3-206ENST00000409809 ZNF826PQ6ZT77 177 aa10.63□□□□□ -0.71
COL6A3-206ENST00000409809 RPL36ALQ969Q0 106 aaKnown RBP10.63□□□□□ -0.71
COL6A3-206ENST00000409809 CARD19Q96LW7 228 aa10.63□□□□□ -0.71
COL6A3-206ENST00000409809 Q86TA4 180 aa10.63□□□□□ -0.71
COL6A3-206ENST00000409809 DEPPQ9NTK1 212 aa10.63□□□□□ -0.71
COL6A3-206ENST00000409809 HIGD1BQ9P298 99 aa10.63□□□□□ -0.71
COL6A3-206ENST00000409809 ANAPC10Q9UM13 185 aa10.63□□□□□ -0.71
COL6A3-206ENST00000409809 TRBV7-1A0A0A6YYK4 115 aa10.63□□□□□ -0.71
COL6A3-206ENST00000409809 FAM104BQ5XKR9 115 aa10.63□□□□□ -0.71
COL6A3-206ENST00000409809 TMEM52Q8NDY8 209 aa10.63□□□□□ -0.71
COL6A3-206ENST00000409809 EXPH5Q8NEV8 1989 aa10.63□□□□□ -0.71
COL6A3-206ENST00000409809 IGLV3-32A0A0A0MS00 114 aa10.62□□□□□ -0.71
COL6A3-206ENST00000409809 KLK10O43240 276 aa10.62□□□□□ -0.71
COL6A3-206ENST00000409809 ZNF319Q9P2F9 582 aa10.62□□□□□ -0.71
COL6A3-206ENST00000409809 IGLC7A0M8Q6 106 aa10.62□□□□□ -0.71
COL6A3-206ENST00000409809 PRR7Q8TB68 274 aa10.62□□□□□ -0.71
COL6A3-206ENST00000409809 PYYP10082 97 aa10.62□□□□□ -0.71
COL6A3-206ENST00000409809 CCL25O15444 150 aa10.62□□□□□ -0.71
COL6A3-206ENST00000409809 LYPD6BQ8NI32 183 aa10.62□□□□□ -0.71
COL6A3-206ENST00000409809 MBNL3Q9NUK0 354 aaKnown RBP10.62□□□□□ -0.71
COL6A3-206ENST00000409809 FAM219BQ5XKK7 198 aa10.62□□□□□ -0.71
COL6A3-206ENST00000409809 IGLL1P15814 213 aa10.61□□□□□ -0.71
COL6A3-206ENST00000409809 F6UB75 175 aa10.61□□□□□ -0.71
COL6A3-206ENST00000409809 TCF15Q12870 199 aa10.61□□□□□ -0.71
COL6A3-206ENST00000409809 LIME1Q9H400 295 aa10.61□□□□□ -0.71
COL6A3-206ENST00000409809 NAV3Q8IVL0 2385 aa10.61□□□□□ -0.71
COL6A3-206ENST00000409809 IGHV3-72A0A0B4J1Y9 119 aa10.61□□□□□ -0.71
COL6A3-206ENST00000409809 PPP1R32Q7Z5V6 425 aa10.61□□□□□ -0.71
COL6A3-206ENST00000409809 IGKV1D-13A0A0B4J2D9 117 aa10.61□□□□□ -0.71
COL6A3-206ENST00000409809 C9orf172C9J069 976 aa10.61□□□□□ -0.71
COL6A3-206ENST00000409809 NDUFB8O95169 186 aa10.61□□□□□ -0.71
COL6A3-206ENST00000409809 IGKV1-13P0DP09 117 aa10.61□□□□□ -0.71
COL6A3-206ENST00000409809 ZNF329Q86UD4 541 aa10.61□□□□□ -0.71
COL6A3-206ENST00000409809 IGHV3OR16-12A0A075B7B8 117 aa10.61□□□□□ -0.71
COL6A3-206ENST00000409809 G3V4G9 280 aa10.61□□□□□ -0.71
COL6A3-206ENST00000409809 C20orf78Q9BR46 151 aa10.61□□□□□ -0.71
COL6A3-206ENST00000409809 PYGO2Q9BRQ0 406 aa10.61□□□□□ -0.71
COL6A3-206ENST00000409809 V9GYY9 64 aa10.61□□□□□ -0.71
COL6A3-206ENST00000409809 Q71RC1 249 aaPredicted RBP10.61□□□□□ -0.71
COL6A3-206ENST00000409809 CD55P08174 381 aa10.6□□□□□ -0.71
COL6A3-206ENST00000409809 PAQR4Q8N4S7 273 aaPredicted RBP10.6□□□□□ -0.71
COL6A3-206ENST00000409809 IGHG3P01860 377 aa10.6□□□□□ -0.71
COL6A3-206ENST00000409809 FOXC1Q12948 553 aa10.6□□□□□ -0.71
COL6A3-206ENST00000409809 SUMO4Q6EEV6 95 aa10.6□□□□□ -0.71
COL6A3-206ENST00000409809 NPIPB5A8MRT5 1133 aa10.6□□□□□ -0.71
COL6A3-206ENST00000409809 NEU4Q8WWR8 484 aaPredicted RBP10.6□□□□□ -0.71
COL6A3-206ENST00000409809 SORL1Q92673 2214 aa10.6□□□□□ -0.71
COL6A3-206ENST00000409809 SH2D1AO60880 128 aa10.6□□□□□ -0.71
COL6A3-206ENST00000409809 hADV29S1A0JD25 119 aa10.59□□□□□ -0.71
COL6A3-206ENST00000409809 IGKV1D-33P01593 117 aa10.59□□□□□ -0.71
COL6A3-206ENST00000409809 IGKV1-33P01594 117 aa10.59□□□□□ -0.71
COL6A3-206ENST00000409809 IL15RAQ13261 267 aa10.59□□□□□ -0.71
COL6A3-206ENST00000409809 TMEM133Q9H2Q1 129 aa10.59□□□□□ -0.71
COL6A3-206ENST00000409809 HS3ST6Q96QI5 342 aa10.59□□□□□ -0.71
COL6A3-206ENST00000409809 VDAC2P45880 294 aaPredicted RBP10.59□□□□□ -0.71
COL6A3-206ENST00000409809 ARRDC1-AS1Q9H2J1 176 aa10.59□□□□□ -0.71
COL6A3-206ENST00000409809 GAS1P54826 345 aa10.59□□□□□ -0.71
COL6A3-206ENST00000409809 MST1LQ2TV78 715 aa10.59□□□□□ -0.71
COL6A3-206ENST00000409809 SS18Q15532 418 aa10.59□□□□□ -0.71
COL6A3-206ENST00000409809 C1orf122Q6ZSJ8 110 aa10.59□□□□□ -0.71
COL6A3-206ENST00000409809 TRAV40A0A0B4J280 105 aa10.59□□□□□ -0.71
COL6A3-206ENST00000409809 CD33P20138 364 aa10.58□□□□□ -0.72
COL6A3-206ENST00000409809 C11orf52Q96A22 123 aa10.58□□□□□ -0.72
COL6A3-206ENST00000409809 LILRA1O75019 489 aa10.58□□□□□ -0.72
COL6A3-206ENST00000409809 C6orf226Q5I0X4 101 aa10.58□□□□□ -0.72
COL6A3-206ENST00000409809 ZNRF1Q8ND25 227 aa10.58□□□□□ -0.72
COL6A3-206ENST00000409809 GFI1Q99684 422 aa10.58□□□□□ -0.72
COL6A3-206ENST00000409809 IGHG2P01859 326 aa10.58□□□□□ -0.72
COL6A3-206ENST00000409809 PDE6GP18545 87 aa10.58□□□□□ -0.72
COL6A3-206ENST00000409809 DMRTC2Q8IXT2 367 aaPredicted RBP10.58□□□□□ -0.72
COL6A3-206ENST00000409809 SSC4DQ8WTU2 575 aa10.58□□□□□ -0.72
COL6A3-206ENST00000409809 DCTN5Q9BTE1 182 aa10.58□□□□□ -0.72
COL6A3-206ENST00000409809 APOBEC3AP31941 199 aaPredicted RBP10.58□□□□□ -0.72
COL6A3-206ENST00000409809 TRIP6Q15654 476 aaKnown RBP10.58□□□□□ -0.72
COL6A3-206ENST00000409809 C12orf74Q32Q52 190 aa10.58□□□□□ -0.72
COL6A3-206ENST00000409809 NRTNQ99748 197 aa10.58□□□□□ -0.72
COL6A3-206ENST00000409809 VSIRQ9H7M9 311 aa10.58□□□□□ -0.72
COL6A3-206ENST00000409809 A0A0B4J2C4 111 aa10.57□□□□□ -0.72
COL6A3-206ENST00000409809 I3L3M4 83 aa10.57□□□□□ -0.72
COL6A3-206ENST00000409809 MRPL23Q16540 153 aaKnown RBP10.57□□□□□ -0.72
COL6A3-206ENST00000409809 TRAV13-1A0A0B4J241 112 aa10.57□□□□□ -0.72
COL6A3-206ENST00000409809 FNDC1Q4ZHG4 1894 aaPredicted RBP10.57□□□□□ -0.72
COL6A3-206ENST00000409809 PAX8Q06710 450 aa10.57□□□□□ -0.72
COL6A3-206ENST00000409809 SRXN1Q9BYN0 137 aa10.57□□□□□ -0.72
COL6A3-206ENST00000409809 DPH3Q96FX2 82 aa10.57□□□□□ -0.72
COL6A3-206ENST00000409809 CHCHD5Q9BSY4 110 aa10.57□□□□□ -0.72
COL6A3-206ENST00000409809 TMEM14CQ9P0S9 112 aa10.57□□□□□ -0.72
COL6A3-206ENST00000409809 SMRP1Q8NCR6 262 aa10.57□□□□□ -0.72
COL6A3-206ENST00000409809 TEX48A0A1B0GUV7 120 aa10.56□□□□□ -0.72
COL6A3-206ENST00000409809 PMS2P5A8MQ11 134 aa10.56□□□□□ -0.72
COL6A3-206ENST00000409809 H0YGX0 51 aa10.56□□□□□ -0.72
COL6A3-206ENST00000409809 TAX1BP3O14907 124 aa10.56□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 60.6 ms