RNA–Protein interactions for RNA: ENST00000399429.7

COL28A1-201, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL28A1, Length 4,277 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-201ENST00000399429 IGHV3OR16-13A0A075B7E8 117 aa7.53□□□□□ -1.2
COL28A1-201ENST00000399429 IGHV3-74A0A0B4J1X5 117 aa7.53□□□□□ -1.2
COL28A1-201ENST00000399429 PLSCR4Q9NRQ2 329 aa7.53□□□□□ -1.2
COL28A1-201ENST00000399429 IGKV3-7A0A075B6H7 116 aa7.53□□□□□ -1.2
COL28A1-201ENST00000399429 GAGE12JA6NER3 117 aa7.53□□□□□ -1.2
COL28A1-201ENST00000399429 PRR33A8MZF0 331 aa7.53□□□□□ -1.2
COL28A1-201ENST00000399429 GAGE7O76087 117 aa7.53□□□□□ -1.2
COL28A1-201ENST00000399429 GAGE12FP0CL80 117 aa7.53□□□□□ -1.2
COL28A1-201ENST00000399429 GAGE12GP0CL81 117 aa7.53□□□□□ -1.2
COL28A1-201ENST00000399429 GAGE12IP0CL82 117 aa7.53□□□□□ -1.2
COL28A1-201ENST00000399429 HERV-K104P63124 156 aa7.53□□□□□ -1.2
COL28A1-201ENST00000399429 GAGE4Q13068 117 aa7.53□□□□□ -1.2
COL28A1-201ENST00000399429 MRPL14Q6P1L8 145 aaKnown RBP7.53□□□□□ -1.2
COL28A1-201ENST00000399429 Q6ZSR3 168 aa7.53□□□□□ -1.2
COL28A1-201ENST00000399429 ZNF436-AS1Q8NC38 126 aaPredicted RBP7.53□□□□□ -1.2
COL28A1-201ENST00000399429 GTSF1Q8WW33 167 aa7.53□□□□□ -1.2
COL28A1-201ENST00000399429 PPDPFLQ8WWR9 84 aa7.53□□□□□ -1.2
COL28A1-201ENST00000399429 TMEM14BQ9NUH8 114 aa7.53□□□□□ -1.2
COL28A1-201ENST00000399429 RPUSD1Q9UJJ7 312 aaKnown RBP7.53□□□□□ -1.2
COL28A1-201ENST00000399429 KMT2EQ8IZD2 1858 aa7.53□□□□□ -1.2
COL28A1-201ENST00000399429 C9JAW5 83 aa7.53□□□□□ -1.2
COL28A1-201ENST00000399429 NDUFS7O75251 213 aa7.53□□□□□ -1.2
COL28A1-201ENST00000399429 ZNF562Q6V9R5 426 aa7.53□□□□□ -1.2
COL28A1-201ENST00000399429 RAX2Q96IS3 184 aa7.53□□□□□ -1.2
COL28A1-201ENST00000399429 HAX1O00165 279 aa7.52□□□□□ -1.2
COL28A1-201ENST00000399429 DLX6P56179 175 aa7.52□□□□□ -1.2
COL28A1-201ENST00000399429 TMPRSS3P57727 454 aa7.52□□□□□ -1.2
COL28A1-201ENST00000399429 PRB3Q04118 309 aaPredicted RBP7.52□□□□□ -1.2
COL28A1-201ENST00000399429 TMEM95Q3KNT9 176 aa7.52□□□□□ -1.2
COL28A1-201ENST00000399429 CT83Q5H943 113 aa7.52□□□□□ -1.2
COL28A1-201ENST00000399429 SP5Q6BEB4 398 aaPredicted RBP7.52□□□□□ -1.2
COL28A1-201ENST00000399429 GLMPQ8WWB7 406 aa7.52□□□□□ -1.2
COL28A1-201ENST00000399429 SMPXQ9UHP9 88 aa7.52□□□□□ -1.2
COL28A1-201ENST00000399429 THADAQ6YHU6 1953 aa7.52□□□□□ -1.21
COL28A1-201ENST00000399429 TRAV8-4A0A0B4J246 113 aa7.52□□□□□ -1.21
COL28A1-201ENST00000399429 M0R381 172 aa7.52□□□□□ -1.21
COL28A1-201ENST00000399429 CCL3L1P16619 93 aa7.52□□□□□ -1.21
COL28A1-201ENST00000399429 C8orf46Q8TAG6 207 aa7.52□□□□□ -1.21
COL28A1-201ENST00000399429 ZNF134P52741 427 aa7.52□□□□□ -1.21
COL28A1-201ENST00000399429 FAM120AOSQ5T036 256 aa7.52□□□□□ -1.21
COL28A1-201ENST00000399429 C1QTNF4Q9BXJ3 329 aa7.52□□□□□ -1.21
COL28A1-201ENST00000399429 IGLV2-8P01709 118 aa7.52□□□□□ -1.21
COL28A1-201ENST00000399429 CECR9P0C854 216 aa7.52□□□□□ -1.21
COL28A1-201ENST00000399429 APOBEC3AP31941 199 aaPredicted RBP7.52□□□□□ -1.21
COL28A1-201ENST00000399429 FAM104BQ5XKR9 115 aa7.52□□□□□ -1.21
COL28A1-201ENST00000399429 Q8TAT8 98 aa7.52□□□□□ -1.21
COL28A1-201ENST00000399429 KLF12Q9Y4X4 402 aa7.52□□□□□ -1.21
COL28A1-201ENST00000399429 MED13Q9UHV7 2174 aa7.51□□□□□ -1.21
COL28A1-201ENST00000399429 NUP210LQ5VU65 1888 aa7.51□□□□□ -1.21
COL28A1-201ENST00000399429 NPYP01303 97 aa7.51□□□□□ -1.21
COL28A1-201ENST00000399429 SSBP2P81877 361 aaPredicted RBP7.51□□□□□ -1.21
COL28A1-201ENST00000399429 TMEM78Q5T7P6 136 aa7.51□□□□□ -1.21
COL28A1-201ENST00000399429 FXYD5Q96DB9 178 aa7.51□□□□□ -1.21
COL28A1-201ENST00000399429 MRPL35Q9NZE8 188 aaKnown RBP7.51□□□□□ -1.21
COL28A1-201ENST00000399429 IGKV2-40A0A087WW87 121 aaPredicted RBP7.51□□□□□ -1.21
COL28A1-201ENST00000399429 IGKV2D-40P01614 121 aaPredicted RBP7.51□□□□□ -1.21
COL28A1-201ENST00000399429 B3GALT5-AS1P59052 145 aa7.51□□□□□ -1.21
COL28A1-201ENST00000399429 KLRB1Q12918 225 aa7.51□□□□□ -1.21
COL28A1-201ENST00000399429 C3orf36Q3SXR2 165 aa7.51□□□□□ -1.21
COL28A1-201ENST00000399429 MRPL51Q4U2R6 128 aaKnown RBP7.51□□□□□ -1.21
COL28A1-201ENST00000399429 ZNF492Q9P255 531 aa7.51□□□□□ -1.21
COL28A1-201ENST00000399429 PCNX2A6NKB5 2137 aa7.51□□□□□ -1.21
COL28A1-201ENST00000399429 IGKV1OR2-108A0A075B7D4 117 aa7.51□□□□□ -1.21
COL28A1-201ENST00000399429 FNDC10F2Z333 226 aa7.51□□□□□ -1.21
COL28A1-201ENST00000399429 FAM106CPP0CH98 169 aa7.51□□□□□ -1.21
COL28A1-201ENST00000399429 FAM106AQ4KMX7 169 aa7.51□□□□□ -1.21
COL28A1-201ENST00000399429 NEGR1Q7Z3B1 354 aa7.51□□□□□ -1.21
COL28A1-201ENST00000399429 PTH2Q96A98 100 aa7.51□□□□□ -1.21
COL28A1-201ENST00000399429 SLC25A39Q9BZJ4 359 aaPredicted RBP7.51□□□□□ -1.21
COL28A1-201ENST00000399429 FBXL15Q9H469 300 aa7.51□□□□□ -1.21
COL28A1-201ENST00000399429 KIAA1549LQ6ZVL6 1849 aa7.51□□□□□ -1.21
COL28A1-201ENST00000399429 IGHV3-23P01764 117 aa7.5□□□□□ -1.21
COL28A1-201ENST00000399429 RRN3P1Q2M238 152 aa7.5□□□□□ -1.21
COL28A1-201ENST00000399429 C2orf91Q6ZV80 131 aa7.5□□□□□ -1.21
COL28A1-201ENST00000399429 C3orf56Q8N813 242 aa7.5□□□□□ -1.21
COL28A1-201ENST00000399429 GPR179Q6PRD1 2367 aa7.5□□□□□ -1.21
COL28A1-201ENST00000399429 MT-ATP8P03928 68 aa7.5□□□□□ -1.21
COL28A1-201ENST00000399429 IGHV1-2P23083 117 aa7.5□□□□□ -1.21
COL28A1-201ENST00000399429 SRSF1Q07955 248 aaKnown RBP eCLIP7.5□□□□□ -1.21
COL28A1-201ENST00000399429 LOXL1Q08397 574 aaPredicted RBP7.5□□□□□ -1.21
COL28A1-201ENST00000399429 FOXI1Q12951 378 aa7.5□□□□□ -1.21
COL28A1-201ENST00000399429 TRAV2A0A0B4J234 112 aa7.49□□□□□ -1.21
COL28A1-201ENST00000399429 SH2D1AO60880 128 aa7.49□□□□□ -1.21
COL28A1-201ENST00000399429 IFITM1P13164 125 aa7.49□□□□□ -1.21
COL28A1-201ENST00000399429 ZNF503Q96F45 646 aa7.49□□□□□ -1.21
COL28A1-201ENST00000399429 TMEM133Q9H2Q1 129 aa7.49□□□□□ -1.21
COL28A1-201ENST00000399429 SPANXB1Q9NS25 103 aaPredicted RBP7.49□□□□□ -1.21
COL28A1-201ENST00000399429 PHLDA3Q9Y5J5 127 aa7.49□□□□□ -1.21
COL28A1-201ENST00000399429 IGKV3D-15A0A087WSY6 115 aa7.49□□□□□ -1.21
COL28A1-201ENST00000399429 FABP5P3A8MUU1 101 aa7.49□□□□□ -1.21
COL28A1-201ENST00000399429 LAGE3Q14657 143 aa7.49□□□□□ -1.21
COL28A1-201ENST00000399429 IGHV3-49A0A0A0MS15 119 aa7.49□□□□□ -1.21
COL28A1-201ENST00000399429 IGHV3-66A0A0C4DH42 116 aa7.49□□□□□ -1.21
COL28A1-201ENST00000399429 TNFRSF6BO95407 300 aa7.49□□□□□ -1.21
COL28A1-201ENST00000399429 BRWD1-AS2P59051 145 aa7.49□□□□□ -1.21
COL28A1-201ENST00000399429 TCTEX1D4Q5JR98 221 aa7.49□□□□□ -1.21
COL28A1-201ENST00000399429 IGFL4Q6B9Z1 124 aa7.49□□□□□ -1.21
COL28A1-201ENST00000399429 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa7.49□□□□□ -1.21
COL28A1-201ENST00000399429 IGKV1D-17A0A075B6S4 117 aa7.49□□□□□ -1.21
COL28A1-201ENST00000399429 CRXO43186 299 aaPredicted RBP7.49□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 39.3 ms