RNA–Protein interactions for RNA: ENST00000394989.6

SNCA-204, Transcript of synuclein alpha, humanhuman

TSL 1 (best) BASIC

Gene SNCA, Length 3,167 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Synapse .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNCA-204ENST00000394989 SH2D7A6NKC9 451 aaPredicted RBP10.96□□□□□ -0.66
SNCA-204ENST00000394989 TOMM40O96008 361 aa10.96□□□□□ -0.66
SNCA-204ENST00000394989 CTRLP40313 264 aa10.96□□□□□ -0.66
SNCA-204ENST00000394989 C5orf17Q8NAS9 161 aa10.96□□□□□ -0.66
SNCA-204ENST00000394989 NUDT10Q8NFP7 164 aa10.96□□□□□ -0.66
SNCA-204ENST00000394989 NUDT11Q96G61 164 aa10.96□□□□□ -0.66
SNCA-204ENST00000394989 MLST8Q9BVC4 326 aa10.96□□□□□ -0.66
SNCA-204ENST00000394989 SSBP4Q9BWG4 385 aaPredicted RBP10.96□□□□□ -0.66
SNCA-204ENST00000394989 SNAI2O43623 268 aa10.95□□□□□ -0.66
SNCA-204ENST00000394989 SAA4P35542 130 aa10.95□□□□□ -0.66
SNCA-204ENST00000394989 CAMPP49913 170 aa10.95□□□□□ -0.66
SNCA-204ENST00000394989 GNB1LQ9BYB4 327 aa10.95□□□□□ -0.66
SNCA-204ENST00000394989 USP9XQ93008 2570 aaPredicted RBP10.95□□□□□ -0.66
SNCA-204ENST00000394989 H3BRN7 92 aa10.95□□□□□ -0.66
SNCA-204ENST00000394989 ZNF324O75467 553 aaPredicted RBP10.95□□□□□ -0.66
SNCA-204ENST00000394989 HSBP1O75506 76 aa10.95□□□□□ -0.66
SNCA-204ENST00000394989 TCRAP04437 139 aa10.95□□□□□ -0.66
SNCA-204ENST00000394989 UBE2G1P62253 170 aa10.95□□□□□ -0.66
SNCA-204ENST00000394989 MPV17L2Q567V2 206 aa10.95□□□□□ -0.66
SNCA-204ENST00000394989 PRR27Q6MZM9 219 aa10.95□□□□□ -0.66
SNCA-204ENST00000394989 RNASEKQ6P5S7 137 aaKnown RBP10.95□□□□□ -0.66
SNCA-204ENST00000394989 LINC00322Q6ZN03 302 aaPredicted RBP10.95□□□□□ -0.66
SNCA-204ENST00000394989 RNF125Q96EQ8 232 aa10.95□□□□□ -0.66
SNCA-204ENST00000394989 C17orf77Q96MU5 243 aa10.95□□□□□ -0.66
SNCA-204ENST00000394989 SHANK2-AS3Q9BTD1 123 aa10.95□□□□□ -0.66
SNCA-204ENST00000394989 CLEC5AQ9NY25 188 aa10.95□□□□□ -0.66
SNCA-204ENST00000394989 IL4P05112 153 aa10.94□□□□□ -0.66
SNCA-204ENST00000394989 TMEM136Q6ZRR5 245 aa10.94□□□□□ -0.66
SNCA-204ENST00000394989 EXOC3-AS1Q8N2X6 119 aa10.94□□□□□ -0.66
SNCA-204ENST00000394989 PIP4P2Q8N4L2 257 aa10.94□□□□□ -0.66
SNCA-204ENST00000394989 WI2-2373I1.2A0A1W2PRP0 233 aa10.94□□□□□ -0.66
SNCA-204ENST00000394989 HIST1H1EP10412 219 aaKnown RBP10.94□□□□□ -0.66
SNCA-204ENST00000394989 Q71RC1 249 aaPredicted RBP10.94□□□□□ -0.66
SNCA-204ENST00000394989 OR2T8A6NH00 312 aa10.93□□□□□ -0.66
SNCA-204ENST00000394989 LTAP01374 205 aa10.93□□□□□ -0.66
SNCA-204ENST00000394989 RIPPLY3P57055 190 aa10.93□□□□□ -0.66
SNCA-204ENST00000394989 NIT1Q86X76 327 aa10.93□□□□□ -0.66
SNCA-204ENST00000394989 TSKUQ8WUA8 353 aa10.93□□□□□ -0.66
SNCA-204ENST00000394989 ORAOV1Q8WV07 137 aa10.93□□□□□ -0.66
SNCA-204ENST00000394989 KCNS1Q96KK3 526 aa10.93□□□□□ -0.66
SNCA-204ENST00000394989 GPR82Q96P67 336 aa10.93□□□□□ -0.66
SNCA-204ENST00000394989 MRPS12O15235 138 aaKnown RBP10.93□□□□□ -0.66
SNCA-204ENST00000394989 IGHV3-23P01764 117 aa10.93□□□□□ -0.66
SNCA-204ENST00000394989 PRB4P10163 310 aaPredicted RBP10.93□□□□□ -0.66
SNCA-204ENST00000394989 IGLL1P15814 213 aa10.93□□□□□ -0.66
SNCA-204ENST00000394989 PMCHL2Q9BQD1 86 aa10.93□□□□□ -0.66
SNCA-204ENST00000394989 TRAV8-1A0A0A6YYK1 113 aa10.93□□□□□ -0.66
SNCA-204ENST00000394989 TRBV9A0A0B4J1U6 114 aa10.93□□□□□ -0.66
SNCA-204ENST00000394989 M0R2Z0 102 aa10.93□□□□□ -0.66
SNCA-204ENST00000394989 GNG7O60262 68 aa10.93□□□□□ -0.66
SNCA-204ENST00000394989 FAM106CPP0CH98 169 aa10.93□□□□□ -0.66
SNCA-204ENST00000394989 KLHDC1Q8N7A1 406 aa10.93□□□□□ -0.66
SNCA-204ENST00000394989 FMC1Q96HJ9 113 aa10.93□□□□□ -0.66
SNCA-204ENST00000394989 ZNF48Q96MX3 618 aaPredicted RBP10.93□□□□□ -0.66
SNCA-204ENST00000394989 BMPR1BO00238 502 aa10.92□□□□□ -0.66
SNCA-204ENST00000394989 IGLV2-11P01706 119 aa10.92□□□□□ -0.66
SNCA-204ENST00000394989 CDKN1BP46527 198 aa10.92□□□□□ -0.66
SNCA-204ENST00000394989 OTORQ9NRC9 128 aa10.92□□□□□ -0.66
SNCA-204ENST00000394989 TRBV19A0A075B6N1 114 aa10.92□□□□□ -0.66
SNCA-204ENST00000394989 IZUMO1RA6ND01 250 aa10.92□□□□□ -0.66
SNCA-204ENST00000394989 VWC2LB2RUY7 222 aa10.92□□□□□ -0.66
SNCA-204ENST00000394989 OR2J3O76001 311 aa10.92□□□□□ -0.66
SNCA-204ENST00000394989 MFAP4P55083 255 aa10.92□□□□□ -0.66
SNCA-204ENST00000394989 SLAQ13239 276 aa10.92□□□□□ -0.66
SNCA-204ENST00000394989 SMIM12Q96EX1 92 aa10.92□□□□□ -0.66
SNCA-204ENST00000394989 DOPEY1Q5JWR5 2465 aa10.92□□□□□ -0.66
SNCA-204ENST00000394989 NUDT3O95989 172 aa10.91□□□□□ -0.66
SNCA-204ENST00000394989 HLA-DRB1P01911 266 aa10.91□□□□□ -0.66
SNCA-204ENST00000394989 NUP35Q8NFH5 326 aa10.91□□□□□ -0.66
SNCA-204ENST00000394989 C21orf62Q9NYP8 219 aa10.91□□□□□ -0.66
SNCA-204ENST00000394989 ACACBO00763 2458 aa10.91□□□□□ -0.66
SNCA-204ENST00000394989 CENPVL3A0A0U1RRI6 287 aa10.91□□□□□ -0.66
SNCA-204ENST00000394989 hDV102S1A0JD36 115 aa10.91□□□□□ -0.66
SNCA-204ENST00000394989 FOXA3P55318 350 aaPredicted RBP10.91□□□□□ -0.66
SNCA-204ENST00000394989 AMMECR1LQ6DCA0 310 aa10.91□□□□□ -0.66
SNCA-204ENST00000394989 BPIFA4PQ86YQ2 179 aa10.91□□□□□ -0.66
SNCA-204ENST00000394989 GRAMD2BQ96HH9 432 aa10.91□□□□□ -0.66
SNCA-204ENST00000394989 NAA38Q9BRA0 125 aaKnown RBP10.91□□□□□ -0.66
SNCA-204ENST00000394989 AMY1AP04745 511 aa10.91□□□□□ -0.66
SNCA-204ENST00000394989 FCGR2BP31994 310 aaPredicted RBP10.91□□□□□ -0.66
SNCA-204ENST00000394989 Q0VG73 95 aa10.91□□□□□ -0.66
SNCA-204ENST00000394989 SIGLEC15Q6ZMC9 328 aa10.91□□□□□ -0.66
SNCA-204ENST00000394989 TRAV30A0A087WSZ9 112 aa10.9□□□□□ -0.66
SNCA-204ENST00000394989 EBLN2Q6P2I7 272 aa10.9□□□□□ -0.66
SNCA-204ENST00000394989 WDR73Q6P4I2 378 aa10.9□□□□□ -0.66
SNCA-204ENST00000394989 ZNF414Q96IQ9 312 aa10.9□□□□□ -0.66
SNCA-204ENST00000394989 PRSS22Q9GZN4 317 aa10.9□□□□□ -0.66
SNCA-204ENST00000394989 C19orf71A6NCJ1 209 aa10.9□□□□□ -0.66
SNCA-204ENST00000394989 NPFFO15130 113 aa10.9□□□□□ -0.66
SNCA-204ENST00000394989 APCSP02743 223 aa10.9□□□□□ -0.66
SNCA-204ENST00000394989 MT-ND6P03923 174 aa10.9□□□□□ -0.66
SNCA-204ENST00000394989 GDF5OSQ5U4N7 250 aa10.9□□□□□ -0.66
SNCA-204ENST00000394989 Q86TA4 180 aa10.9□□□□□ -0.66
SNCA-204ENST00000394989 CTSGP08311 255 aa10.89□□□□□ -0.67
SNCA-204ENST00000394989 GOLT1AQ6ZVE7 132 aa10.89□□□□□ -0.67
SNCA-204ENST00000394989 MRPL52Q86TS9 123 aaKnown RBP10.89□□□□□ -0.67
SNCA-204ENST00000394989 ZNF331Q9NQX6 463 aaPredicted RBP10.89□□□□□ -0.67
SNCA-204ENST00000394989 CACNA1BQ00975 2339 aa10.89□□□□□ -0.67
SNCA-204ENST00000394989 LINC01548A6NM66 108 aa10.89□□□□□ -0.67
SNCA-204ENST00000394989 HIGD1CA8MV81 97 aa10.89□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 55.5 ms