RNA–Protein interactions for RNA: ENST00000394243.5

SYNPO-202, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNPO, Length 7,063 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-202ENST00000394243 C5orf63A6NC05 138 aa9.66□□□□□ -0.86
SYNPO-202ENST00000394243 YPEL3P61236 119 aaPredicted RBP9.66□□□□□ -0.86
SYNPO-202ENST00000394243 RBM3P98179 157 aaKnown RBP9.66□□□□□ -0.86
SYNPO-202ENST00000394243 OR11H6Q8NGC7 330 aa9.66□□□□□ -0.86
SYNPO-202ENST00000394243 HAMPP81172 84 aa9.66□□□□□ -0.86
SYNPO-202ENST00000394243 ANAPC10Q9UM13 185 aa9.66□□□□□ -0.86
SYNPO-202ENST00000394243 COL18A1P39060 1754 aa9.66□□□□□ -0.86
SYNPO-202ENST00000394243 NDPQ00604 133 aa9.66□□□□□ -0.86
SYNPO-202ENST00000394243 UBL5Q9BZL1 73 aa9.66□□□□□ -0.86
SYNPO-202ENST00000394243 PRO1854Q9UHT4 67 aa9.66□□□□□ -0.86
SYNPO-202ENST00000394243 LINC00527Q9UJ94 153 aa9.66□□□□□ -0.86
SYNPO-202ENST00000394243 LGALS9BQ3B8N2 356 aa9.66□□□□□ -0.86
SYNPO-202ENST00000394243 LGALS9CQ6DKI2 356 aa9.66□□□□□ -0.86
SYNPO-202ENST00000394243 LYPD1Q8N2G4 141 aa9.66□□□□□ -0.86
SYNPO-202ENST00000394243 VGLL1Q99990 258 aa9.66□□□□□ -0.86
SYNPO-202ENST00000394243 HEATR5AQ86XA9 2040 aa9.66□□□□□ -0.86
SYNPO-202ENST00000394243 TRAV12-1A0A0B4J245 112 aa9.66□□□□□ -0.86
SYNPO-202ENST00000394243 IGLC7A0M8Q6 106 aa9.66□□□□□ -0.86
SYNPO-202ENST00000394243 COX6B1P14854 86 aa9.66□□□□□ -0.86
SYNPO-202ENST00000394243 MYO7BQ6PIF6 2116 aa9.65□□□□□ -0.86
SYNPO-202ENST00000394243 ARFGEF3Q5TH69 2177 aa9.65□□□□□ -0.86
SYNPO-202ENST00000394243 RS1O15537 224 aa9.65□□□□□ -0.86
SYNPO-202ENST00000394243 TP53TG1Q9Y2A0 90 aa9.65□□□□□ -0.86
SYNPO-202ENST00000394243 NCOR1O75376 2440 aa9.65□□□□□ -0.86
SYNPO-202ENST00000394243 VDAC2P45880 294 aaPredicted RBP9.65□□□□□ -0.86
SYNPO-202ENST00000394243 RPL36AP83881 106 aaKnown RBP9.65□□□□□ -0.86
SYNPO-202ENST00000394243 NEU4Q8WWR8 484 aaPredicted RBP9.65□□□□□ -0.86
SYNPO-202ENST00000394243 RPL36ALQ969Q0 106 aaKnown RBP9.65□□□□□ -0.86
SYNPO-202ENST00000394243 V9GYV3 84 aa9.65□□□□□ -0.86
SYNPO-202ENST00000394243 FAM104BQ5XKR9 115 aa9.65□□□□□ -0.86
SYNPO-202ENST00000394243 C9orf106Q8NAJ2 232 aa9.65□□□□□ -0.86
SYNPO-202ENST00000394243 LINC00477Q96M19 166 aa9.65□□□□□ -0.86
SYNPO-202ENST00000394243 CRYBA4P53673 196 aa9.65□□□□□ -0.87
SYNPO-202ENST00000394243 RBMY1FQ15415 496 aaKnown RBP9.65□□□□□ -0.87
SYNPO-202ENST00000394243 CARD19Q96LW7 228 aa9.64□□□□□ -0.87
SYNPO-202ENST00000394243 SPTBN1Q01082 2364 aaKnown RBP9.64□□□□□ -0.87
SYNPO-202ENST00000394243 WIPF3A6NGB9 483 aa9.64□□□□□ -0.87
SYNPO-202ENST00000394243 C8orf49Q96NF6 230 aa9.64□□□□□ -0.87
SYNPO-202ENST00000394243 MRPS18CQ9Y3D5 142 aaKnown RBP9.64□□□□□ -0.87
SYNPO-202ENST00000394243 IGHV3-53P01767 116 aa9.64□□□□□ -0.87
SYNPO-202ENST00000394243 ZNF726P1Q15940 193 aa9.64□□□□□ -0.87
SYNPO-202ENST00000394243 RNASE8Q8TDE3 154 aaKnown RBP9.64□□□□□ -0.87
SYNPO-202ENST00000394243 C7orf69Q9H7B7 122 aa9.64□□□□□ -0.87
SYNPO-202ENST00000394243 SAP30O75446 220 aa9.64□□□□□ -0.87
SYNPO-202ENST00000394243 METRNQ9UJH8 293 aa9.64□□□□□ -0.87
SYNPO-202ENST00000394243 SMIM27A0A1W2PRY6 76 aa9.64□□□□□ -0.87
SYNPO-202ENST00000394243 C12orf74Q32Q52 190 aa9.64□□□□□ -0.87
SYNPO-202ENST00000394243 KMT2EQ8IZD2 1858 aa9.63□□□□□ -0.87
SYNPO-202ENST00000394243 A0A087WX48 190 aa9.63□□□□□ -0.87
SYNPO-202ENST00000394243 LYNX1G3V0Z9 82 aa9.63□□□□□ -0.87
SYNPO-202ENST00000394243 LYNX1P0DP58 116 aa9.63□□□□□ -0.87
SYNPO-202ENST00000394243 MRPL51Q4U2R6 128 aaKnown RBP9.63□□□□□ -0.87
SYNPO-202ENST00000394243 Q8N8P6 123 aa9.63□□□□□ -0.87
SYNPO-202ENST00000394243 TMEM258P61165 79 aa9.63□□□□□ -0.87
SYNPO-202ENST00000394243 C2orf66Q6UXQ4 117 aa9.63□□□□□ -0.87
SYNPO-202ENST00000394243 ZNF492Q9P255 531 aa9.63□□□□□ -0.87
SYNPO-202ENST00000394243 IL18BPO95998 194 aa9.63□□□□□ -0.87
SYNPO-202ENST00000394243 C3orf36Q3SXR2 165 aa9.63□□□□□ -0.87
SYNPO-202ENST00000394243 UNQ6494/PRO21346Q6UXR6 183 aa9.63□□□□□ -0.87
SYNPO-202ENST00000394243 NTN5Q8WTR8 489 aaPredicted RBP9.63□□□□□ -0.87
SYNPO-202ENST00000394243 TEX48A0A1B0GUV7 120 aa9.63□□□□□ -0.87
SYNPO-202ENST00000394243 RNASE2P10153 161 aaKnown RBP9.63□□□□□ -0.87
SYNPO-202ENST00000394243 SH2D6Q7Z4S9 175 aa9.63□□□□□ -0.87
SYNPO-202ENST00000394243 PNRC2Q9NPJ4 139 aaKnown RBP9.63□□□□□ -0.87
SYNPO-202ENST00000394243 TRGV1A0A0A0MS02 117 aa9.63□□□□□ -0.87
SYNPO-202ENST00000394243 F8WEM9 126 aa9.63□□□□□ -0.87
SYNPO-202ENST00000394243 TMEM200BQ69YZ2 307 aa9.63□□□□□ -0.87
SYNPO-202ENST00000394243 CD177Q8N6Q3 437 aa9.63□□□□□ -0.87
SYNPO-202ENST00000394243 MRPL35Q9NZE8 188 aaKnown RBP9.63□□□□□ -0.87
SYNPO-202ENST00000394243 IGHV1-18A0A0C4DH31 117 aa9.62□□□□□ -0.87
SYNPO-202ENST00000394243 IGHV2-70DA0A0C4DH43 119 aa9.62□□□□□ -0.87
SYNPO-202ENST00000394243 PRSS46E5RG02 174 aa9.62□□□□□ -0.87
SYNPO-202ENST00000394243 RPL32P62910 135 aaKnown RBP9.62□□□□□ -0.87
SYNPO-202ENST00000394243 SP7Q8TDD2 431 aaPredicted RBP9.62□□□□□ -0.87
SYNPO-202ENST00000394243 H0YJW9 148 aa9.62□□□□□ -0.87
SYNPO-202ENST00000394243 PRR19A6NJB7 356 aa9.62□□□□□ -0.87
SYNPO-202ENST00000394243 C20orf204Q6ZNR8 217 aa9.62□□□□□ -0.87
SYNPO-202ENST00000394243 SIGLEC8Q9NYZ4 499 aa9.62□□□□□ -0.87
SYNPO-202ENST00000394243 FNDC10F2Z333 226 aa9.62□□□□□ -0.87
SYNPO-202ENST00000394243 SP9P0CG40 484 aa9.62□□□□□ -0.87
SYNPO-202ENST00000394243 DOCK3Q8IZD9 2030 aa9.62□□□□□ -0.87
SYNPO-202ENST00000394243 ASPHD1Q5U4P2 390 aa9.62□□□□□ -0.87
SYNPO-202ENST00000394243 TMEM75Q8N9X5 138 aa9.61□□□□□ -0.87
SYNPO-202ENST00000394243 IGLV3-32A0A0A0MS00 114 aa9.61□□□□□ -0.87
SYNPO-202ENST00000394243 TRBV6-6A0A0A6YYG2 114 aa9.61□□□□□ -0.87
SYNPO-202ENST00000394243 IGHV1-3A0A0C4DH29 117 aa9.61□□□□□ -0.87
SYNPO-202ENST00000394243 KIR2DL5BA0A0G2JN68 375 aa9.61□□□□□ -0.87
SYNPO-202ENST00000394243 KIR2DL5BA0A0G2JPC4 375 aa9.61□□□□□ -0.87
SYNPO-202ENST00000394243 SIVA1O15304 175 aa9.61□□□□□ -0.87
SYNPO-202ENST00000394243 HLA-DRB4P13762 266 aa9.61□□□□□ -0.87
SYNPO-202ENST00000394243 Q6P435 159 aa9.61□□□□□ -0.87
SYNPO-202ENST00000394243 C9orf139Q6ZV77 190 aa9.61□□□□□ -0.87
SYNPO-202ENST00000394243 KIR2DL5AQ8N109 375 aa9.61□□□□□ -0.87
SYNPO-202ENST00000394243 HLA-DRB4X5D2U9 266 aa9.61□□□□□ -0.87
SYNPO-202ENST00000394243 HLA-DMBP28068 263 aa9.61□□□□□ -0.87
SYNPO-202ENST00000394243 FOXG1P55316 489 aaPredicted RBP9.61□□□□□ -0.87
SYNPO-202ENST00000394243 TAL2Q16559 108 aa9.61□□□□□ -0.87
SYNPO-202ENST00000394243 DTX2Q86UW9 622 aa9.61□□□□□ -0.87
SYNPO-202ENST00000394243 TMEM141Q96I45 108 aa9.61□□□□□ -0.87
SYNPO-202ENST00000394243 PARP14Q460N5 1801 aa9.61□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 46.2 ms