RNA–Protein interactions for RNA: ENST00000378839.1

CCDC3-202, Transcript of coiled-coil domain containing 3, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene CCDC3, Length 3,180 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3-202ENST00000378839 C1orf122Q6ZSJ8 110 aa10.48□□□□□ -0.73
CCDC3-202ENST00000378839 PRNTQ86SH4 94 aa10.48□□□□□ -0.73
CCDC3-202ENST00000378839 NIT1Q86X76 327 aa10.48□□□□□ -0.73
CCDC3-202ENST00000378839 MIEN1Q9BRT3 115 aa10.48□□□□□ -0.73
CCDC3-202ENST00000378839 IGHV7-81A0A0B4J1V7 117 aa10.47□□□□□ -0.73
CCDC3-202ENST00000378839 NPIPB5A8MRT5 1133 aa10.47□□□□□ -0.73
CCDC3-202ENST00000378839 EBI3Q14213 229 aa10.47□□□□□ -0.73
CCDC3-202ENST00000378839 TTC9CQ8N5M4 171 aa10.47□□□□□ -0.73
CCDC3-202ENST00000378839 KIR2DL5BA0A0G2JN68 375 aa10.47□□□□□ -0.73
CCDC3-202ENST00000378839 KIR2DL5BA0A0G2JPC4 375 aa10.47□□□□□ -0.73
CCDC3-202ENST00000378839 M0R3E3 92 aa10.47□□□□□ -0.73
CCDC3-202ENST00000378839 COL5A1-AS1Q5SY13 56 aa10.47□□□□□ -0.73
CCDC3-202ENST00000378839 KIR2DL5AQ8N109 375 aa10.47□□□□□ -0.73
CCDC3-202ENST00000378839 URB1-AS1Q96HZ7 61 aa10.47□□□□□ -0.73
CCDC3-202ENST00000378839 KCNS1Q96KK3 526 aa10.47□□□□□ -0.73
CCDC3-202ENST00000378839 SPATA45Q537H7 98 aa10.47□□□□□ -0.73
CCDC3-202ENST00000378839 LCN12Q6JVE5 192 aa10.47□□□□□ -0.73
CCDC3-202ENST00000378839 TEX43Q6ZNM6 134 aa10.47□□□□□ -0.73
CCDC3-202ENST00000378839 Q8N9W7 124 aa10.47□□□□□ -0.73
CCDC3-202ENST00000378839 SMIM12Q96EX1 92 aa10.47□□□□□ -0.73
CCDC3-202ENST00000378839 PGLYRP4Q96LB8 373 aa10.47□□□□□ -0.73
CCDC3-202ENST00000378839 NRN1Q9NPD7 142 aa10.47□□□□□ -0.73
CCDC3-202ENST00000378839 IGHV3OR16-8A0A075B7F1 116 aa10.46□□□□□ -0.73
CCDC3-202ENST00000378839 SH2D7A6NKC9 451 aaPredicted RBP10.46□□□□□ -0.73
CCDC3-202ENST00000378839 LINC01548A6NM66 108 aa10.46□□□□□ -0.73
CCDC3-202ENST00000378839 GNLYP22749 145 aa10.46□□□□□ -0.73
CCDC3-202ENST00000378839 CRIP1P50238 77 aa10.46□□□□□ -0.73
CCDC3-202ENST00000378839 HNRNPA3P51991 378 aaKnown RBP10.46□□□□□ -0.73
CCDC3-202ENST00000378839 ARL6IP6Q8N6S5 226 aa10.46□□□□□ -0.73
CCDC3-202ENST00000378839 ALKBH7Q9BT30 221 aaPredicted RBP10.46□□□□□ -0.73
CCDC3-202ENST00000378839 ZNF492Q9P255 531 aa10.46□□□□□ -0.73
CCDC3-202ENST00000378839 NPIPB6E9PJ23 425 aa10.46□□□□□ -0.74
CCDC3-202ENST00000378839 OR2J3O76001 311 aa10.46□□□□□ -0.74
CCDC3-202ENST00000378839 HLA-DRB1P01911 266 aa10.46□□□□□ -0.74
CCDC3-202ENST00000378839 AMTP48728 403 aa10.46□□□□□ -0.74
CCDC3-202ENST00000378839 LMO4P61968 165 aa10.46□□□□□ -0.74
CCDC3-202ENST00000378839 RPL19P84098 196 aaKnown RBP10.46□□□□□ -0.74
CCDC3-202ENST00000378839 C16orf54Q6UWD8 224 aa10.46□□□□□ -0.74
CCDC3-202ENST00000378839 CHRDL1Q9BU40 450 aa10.46□□□□□ -0.74
CCDC3-202ENST00000378839 BPESC1Q9GZL8 116 aa10.46□□□□□ -0.74
CCDC3-202ENST00000378839 OR2T8A6NH00 312 aa10.45□□□□□ -0.74
CCDC3-202ENST00000378839 DIRC3C9JPN6 131 aa10.45□□□□□ -0.74
CCDC3-202ENST00000378839 COX19Q49B96 90 aa10.45□□□□□ -0.74
CCDC3-202ENST00000378839 RASL11AQ6T310 242 aa10.45□□□□□ -0.74
CCDC3-202ENST00000378839 OR2D3Q8NGH3 330 aa10.45□□□□□ -0.74
CCDC3-202ENST00000378839 CFAP46Q8IYW2 2715 aa10.45□□□□□ -0.74
CCDC3-202ENST00000378839 IGHV2-70DA0A0C4DH43 119 aa10.45□□□□□ -0.74
CCDC3-202ENST00000378839 GNG7O60262 68 aa10.45□□□□□ -0.74
CCDC3-202ENST00000378839 P01737 135 aa10.45□□□□□ -0.74
CCDC3-202ENST00000378839 APOHP02749 345 aaPredicted RBP10.45□□□□□ -0.74
CCDC3-202ENST00000378839 TMEM11P17152 192 aa10.45□□□□□ -0.74
CCDC3-202ENST00000378839 VAMP3Q15836 100 aa10.45□□□□□ -0.74
CCDC3-202ENST00000378839 PIP4P2Q8N4L2 257 aa10.45□□□□□ -0.74
CCDC3-202ENST00000378839 SIGLECL1Q8N7X8 197 aa10.45□□□□□ -0.74
CCDC3-202ENST00000378839 ZNF324O75467 553 aaPredicted RBP10.45□□□□□ -0.74
CCDC3-202ENST00000378839 BPIFA4PQ86YQ2 179 aa10.45□□□□□ -0.74
CCDC3-202ENST00000378839 IGHV3-35A0A0C4DH35 117 aa10.44□□□□□ -0.74
CCDC3-202ENST00000378839 M0QZK8 103 aa10.44□□□□□ -0.74
CCDC3-202ENST00000378839 CTSGP08311 255 aa10.44□□□□□ -0.74
CCDC3-202ENST00000378839 LINC00614P0C842 121 aa10.44□□□□□ -0.74
CCDC3-202ENST00000378839 OR4C5Q8NGB2 326 aa10.44□□□□□ -0.74
CCDC3-202ENST00000378839 RBX1P62877 108 aa10.44□□□□□ -0.74
CCDC3-202ENST00000378839 Q56UQ5 140 aa10.44□□□□□ -0.74
CCDC3-202ENST00000378839 CELSR2Q9HCU4 2923 aa10.43□□□□□ -0.74
CCDC3-202ENST00000378839 H0Y8G0 127 aa10.43□□□□□ -0.74
CCDC3-202ENST00000378839 EFNA4P52798 201 aa10.43□□□□□ -0.74
CCDC3-202ENST00000378839 MFAP4P55083 255 aa10.43□□□□□ -0.74
CCDC3-202ENST00000378839 ANKRD39Q53RE8 183 aa10.43□□□□□ -0.74
CCDC3-202ENST00000378839 MINOS1Q5TGZ0 78 aa10.43□□□□□ -0.74
CCDC3-202ENST00000378839 C8orf49Q96NF6 230 aa10.43□□□□□ -0.74
CCDC3-202ENST00000378839 C21orf62Q9NYP8 219 aa10.43□□□□□ -0.74
CCDC3-202ENST00000378839 C1RLQ9NZP8 487 aa10.43□□□□□ -0.74
CCDC3-202ENST00000378839 SMAD5-AS1Q9Y6J3 95 aa10.43□□□□□ -0.74
CCDC3-202ENST00000378839 MINOS1-NBL1R4GNA1 71 aa10.43□□□□□ -0.74
CCDC3-202ENST00000378839 ABCA2Q9BZC7 2435 aa10.43□□□□□ -0.74
CCDC3-202ENST00000378839 SAA4P35542 130 aa10.43□□□□□ -0.74
CCDC3-202ENST00000378839 KLF5Q13887 457 aaPredicted RBP10.43□□□□□ -0.74
CCDC3-202ENST00000378839 IGFL4Q6B9Z1 124 aa10.43□□□□□ -0.74
CCDC3-202ENST00000378839 CCDC144NLQ6NUI1 221 aa10.43□□□□□ -0.74
CCDC3-202ENST00000378839 ZFP30Q9Y2G7 519 aa10.43□□□□□ -0.74
CCDC3-202ENST00000378839 C3orf79P0CE67 100 aa10.42□□□□□ -0.74
CCDC3-202ENST00000378839 FOXA3P55318 350 aaPredicted RBP10.42□□□□□ -0.74
CCDC3-202ENST00000378839 CT83Q5H943 113 aa10.42□□□□□ -0.74
CCDC3-202ENST00000378839 ZNF48Q96MX3 618 aaPredicted RBP10.42□□□□□ -0.74
CCDC3-202ENST00000378839 ATP5L2Q7Z4Y8 100 aa10.42□□□□□ -0.74
CCDC3-202ENST00000378839 OR4F17Q8NGA8 305 aa10.42□□□□□ -0.74
CCDC3-202ENST00000378839 PKD1L2Q7Z442 2459 aa10.42□□□□□ -0.74
CCDC3-202ENST00000378839 IGHG4P01861 327 aa10.42□□□□□ -0.74
CCDC3-202ENST00000378839 TCTAP57738 103 aa10.42□□□□□ -0.74
CCDC3-202ENST00000378839 HBBP68871 147 aa10.42□□□□□ -0.74
CCDC3-202ENST00000378839 SPATA12Q7Z6I5 190 aa10.42□□□□□ -0.74
CCDC3-202ENST00000378839 TMEM75Q8N9X5 138 aa10.42□□□□□ -0.74
CCDC3-202ENST00000378839 PSG8Q9UQ74 426 aa10.42□□□□□ -0.74
CCDC3-202ENST00000378839 CACNA1BQ00975 2339 aa10.42□□□□□ -0.74
CCDC3-202ENST00000378839 A8MWL6 223 aa10.41□□□□□ -0.74
CCDC3-202ENST00000378839 COL8A1P27658 744 aa10.41□□□□□ -0.74
CCDC3-202ENST00000378839 HLA-DMBP28068 263 aa10.41□□□□□ -0.74
CCDC3-202ENST00000378839 UBE2E1P51965 193 aa10.41□□□□□ -0.74
CCDC3-202ENST00000378839 PSG3Q16557 428 aa10.41□□□□□ -0.74
CCDC3-202ENST00000378839 TRBV6-1A0A0K0K1D8 114 aa10.41□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 74.2 ms