RNA–Protein interactions for RNA: ENST00000376646.3

VPS13A-206, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 5 BASIC

Gene VPS13A, Length 2,262 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-206ENST00000376646 MCM3APO60318 1980 aa0.54□□□□□ -2.32
VPS13A-206ENST00000376646 MYO5AQ9Y4I1 1855 aaKnown RBP0.54□□□□□ -2.32
VPS13A-206ENST00000376646 POLQO75417 2590 aa0.54□□□□□ -2.32
VPS13A-206ENST00000376646 NUP98P52948 1817 aa0.54□□□□□ -2.32
VPS13A-206ENST00000376646 M0R2N4 97 aa0.54□□□□□ -2.32
VPS13A-206ENST00000376646 INE1O15225 51 aa0.54□□□□□ -2.32
VPS13A-206ENST00000376646 CCL16O15467 120 aa0.54□□□□□ -2.32
VPS13A-206ENST00000376646 TRGC2P03986 189 aa0.54□□□□□ -2.32
VPS13A-206ENST00000376646 CXCL1P09341 107 aa0.54□□□□□ -2.32
VPS13A-206ENST00000376646 POU6F1Q14863 301 aa0.54□□□□□ -2.32
VPS13A-206ENST00000376646 SCGB2B2Q4G0G5 96 aa0.54□□□□□ -2.32
VPS13A-206ENST00000376646 C4orf22Q6V702 233 aa0.54□□□□□ -2.32
VPS13A-206ENST00000376646 IFT20Q8IY31 132 aa0.54□□□□□ -2.32
VPS13A-206ENST00000376646 POP5Q969H6 163 aaKnown RBP0.54□□□□□ -2.32
VPS13A-206ENST00000376646 LINC00526Q96FQ7 95 aa0.54□□□□□ -2.32
VPS13A-206ENST00000376646 TEX37Q96LM6 180 aa0.54□□□□□ -2.32
VPS13A-206ENST00000376646 SH3BGRL3Q9H299 93 aa0.54□□□□□ -2.32
VPS13A-206ENST00000376646 MDN1Q9NU22 5596 aa0.54□□□□□ -2.32
VPS13A-206ENST00000376646 UHRF1BP1Q6BDS2 1440 aa0.54□□□□□ -2.32
VPS13A-206ENST00000376646 FLNAP21333 2647 aaKnown RBP0.54□□□□□ -2.32
VPS13A-206ENST00000376646 MEGF8Q7Z7M0 2845 aa0.54□□□□□ -2.32
VPS13A-206ENST00000376646 LAMB4A4D0S4 1761 aa0.54□□□□□ -2.32
VPS13A-206ENST00000376646 ZFYVE26Q68DK2 2539 aa0.53□□□□□ -2.32
VPS13A-206ENST00000376646 CEP350Q5VT06 3117 aa0.53□□□□□ -2.32
VPS13A-206ENST00000376646 ODAMA1E959 279 aa0.53□□□□□ -2.32
VPS13A-206ENST00000376646 K7ERJ3 54 aa0.53□□□□□ -2.32
VPS13A-206ENST00000376646 APOA2P02652 100 aa0.53□□□□□ -2.32
VPS13A-206ENST00000376646 GNG10P50151 68 aa0.53□□□□□ -2.32
VPS13A-206ENST00000376646 TMBIM6P55061 237 aa0.53□□□□□ -2.32
VPS13A-206ENST00000376646 ARPP19P56211 112 aa0.53□□□□□ -2.32
VPS13A-206ENST00000376646 MSMO1Q15800 293 aa0.53□□□□□ -2.32
VPS13A-206ENST00000376646 C1orf134Q5TEV5 83 aa0.53□□□□□ -2.32
VPS13A-206ENST00000376646 C2orf82Q6UX34 121 aa0.53□□□□□ -2.32
VPS13A-206ENST00000376646 PATE2Q6UY27 113 aa0.53□□□□□ -2.32
VPS13A-206ENST00000376646 OR4K15Q8NH41 348 aa0.53□□□□□ -2.32
VPS13A-206ENST00000376646 ZNF714Q96N38 554 aa0.53□□□□□ -2.32
VPS13A-206ENST00000376646 TP53RKQ96S44 253 aa0.53□□□□□ -2.32
VPS13A-206ENST00000376646 GPX7Q96SL4 187 aaPredicted RBP0.53□□□□□ -2.32
VPS13A-206ENST00000376646 GGACTQ9BVM4 153 aa0.53□□□□□ -2.32
VPS13A-206ENST00000376646 POPDC3Q9HBV1 291 aa0.53□□□□□ -2.32
VPS13A-206ENST00000376646 UFC1Q9Y3C8 167 aa0.53□□□□□ -2.32
VPS13A-206ENST00000376646 NHSL1Q5SYE7 1610 aa0.53□□□□□ -2.32
VPS13A-206ENST00000376646 RAPGEF6Q8TEU7 1601 aa0.53□□□□□ -2.32
VPS13A-206ENST00000376646 MYO9AB2RTY4 2548 aa0.53□□□□□ -2.32
VPS13A-206ENST00000376646 HEATR1Q9H583 2144 aaKnown RBP0.53□□□□□ -2.32
VPS13A-206ENST00000376646 ADGRB2O60241 1585 aa0.53□□□□□ -2.32
VPS13A-206ENST00000376646 N4BP2Q86UW6 1770 aaPredicted RBP0.53□□□□□ -2.33
VPS13A-206ENST00000376646 MYH2Q9UKX2 1941 aa0.53□□□□□ -2.33
VPS13A-206ENST00000376646 TRAV10A0A0B4J240 114 aa0.53□□□□□ -2.33
VPS13A-206ENST00000376646 TRBV6-4A0A1B0GX49 114 aa0.53□□□□□ -2.33
VPS13A-206ENST00000376646 M0R233 179 aa0.53□□□□□ -2.33
VPS13A-206ENST00000376646 CCL25O15444 150 aa0.53□□□□□ -2.33
VPS13A-206ENST00000376646 PIAS1O75925 651 aa0.53□□□□□ -2.33
VPS13A-206ENST00000376646 IFNA14P01570 189 aa0.53□□□□□ -2.33
VPS13A-206ENST00000376646 CSN2P05814 226 aa0.53□□□□□ -2.33
VPS13A-206ENST00000376646 OGNP20774 298 aaKnown RBP0.53□□□□□ -2.33
VPS13A-206ENST00000376646 OR5D16Q8NGK9 328 aa0.53□□□□□ -2.33
VPS13A-206ENST00000376646 PPTC7Q8NI37 304 aa0.53□□□□□ -2.33
VPS13A-206ENST00000376646 RAB37Q96AX2 223 aa0.53□□□□□ -2.33
VPS13A-206ENST00000376646 PRRT1Q99946 306 aa0.53□□□□□ -2.33
VPS13A-206ENST00000376646 PBOV1Q9GZY1 135 aa0.53□□□□□ -2.33
VPS13A-206ENST00000376646 TNS3Q68CZ2 1445 aa0.53□□□□□ -2.33
VPS13A-206ENST00000376646 PLXNA4Q9HCM2 1894 aa0.53□□□□□ -2.33
VPS13A-206ENST00000376646 SONP18583 2426 aaKnown RBP0.52□□□□□ -2.33
VPS13A-206ENST00000376646 FAT3Q8TDW7 4589 aa0.52□□□□□ -2.33
VPS13A-206ENST00000376646 IQSEC2Q5JU85 1478 aa0.52□□□□□ -2.33
VPS13A-206ENST00000376646 IGLV1-51P01701 117 aa0.52□□□□□ -2.33
VPS13A-206ENST00000376646 GLRXP35754 106 aa0.52□□□□□ -2.33
VPS13A-206ENST00000376646 DSCR4P56555 118 aaPredicted RBP0.52□□□□□ -2.33
VPS13A-206ENST00000376646 CDK6Q00534 326 aa0.52□□□□□ -2.33
VPS13A-206ENST00000376646 ZNF833PQ6ZTB9 187 aa0.52□□□□□ -2.33
VPS13A-206ENST00000376646 NEK7Q8TDX7 302 aa0.52□□□□□ -2.33
VPS13A-206ENST00000376646 CHCHD1Q96BP2 118 aaKnown RBP0.52□□□□□ -2.33
VPS13A-206ENST00000376646 MALSU1Q96EH3 234 aa0.52□□□□□ -2.33
VPS13A-206ENST00000376646 TMEM70Q9BUB7 260 aa0.52□□□□□ -2.33
VPS13A-206ENST00000376646 ORMDL1Q9P0S3 153 aa0.52□□□□□ -2.33
VPS13A-206ENST00000376646 UBR5O95071 2799 aaPredicted RBP0.52□□□□□ -2.33
VPS13A-206ENST00000376646 ITPR1Q14643 2758 aa0.52□□□□□ -2.33
VPS13A-206ENST00000376646 NBEAL1Q6ZS30 2694 aa0.52□□□□□ -2.33
VPS13A-206ENST00000376646 FLNCQ14315 2725 aa0.52□□□□□ -2.33
VPS13A-206ENST00000376646 CD109Q6YHK3 1445 aa0.52□□□□□ -2.33
VPS13A-206ENST00000376646 KALRNO60229 2985 aa0.52□□□□□ -2.33
VPS13A-206ENST00000376646 PCNX1Q96RV3 2341 aa0.52□□□□□ -2.33
VPS13A-206ENST00000376646 E9PCH4 1651 aa0.52□□□□□ -2.33
VPS13A-206ENST00000376646 MYH3P11055 1940 aa0.52□□□□□ -2.33
VPS13A-206ENST00000376646 E5RI56 91 aa0.52□□□□□ -2.33
VPS13A-206ENST00000376646 E7EUB6 86 aa0.52□□□□□ -2.33
VPS13A-206ENST00000376646 C17orf112F2Z3M2 114 aa0.52□□□□□ -2.33
VPS13A-206ENST00000376646 ERC2-IT1O76042 136 aa0.52□□□□□ -2.33
VPS13A-206ENST00000376646 OR10J4P0C629 311 aa0.52□□□□□ -2.33
VPS13A-206ENST00000376646 RAB5CP51148 216 aa0.52□□□□□ -2.33
VPS13A-206ENST00000376646 CRYBA4P53673 196 aa0.52□□□□□ -2.33
VPS13A-206ENST00000376646 TCTAP57738 103 aa0.52□□□□□ -2.33
VPS13A-206ENST00000376646 KLRD1Q13241 179 aa0.52□□□□□ -2.33
VPS13A-206ENST00000376646 TRIQKQ629K1 86 aa0.52□□□□□ -2.33
VPS13A-206ENST00000376646 Q8TAT8 98 aa0.52□□□□□ -2.33
VPS13A-206ENST00000376646 MUCL1Q96DR8 90 aa0.52□□□□□ -2.33
VPS13A-206ENST00000376646 LINC00052Q96N35 136 aa0.52□□□□□ -2.33
VPS13A-206ENST00000376646 KIAA1549Q9HCM3 1950 aa0.51□□□□□ -2.33
VPS13A-206ENST00000376646 CASP8AP2Q9UKL3 1982 aa0.51□□□□□ -2.33
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms