RNA–Protein interactions for RNA: ENST00000356922.5

LIG4-201, Transcript of DNA ligase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LIG4, Length 4,096 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG4-201ENST00000356922 TUBA4BQ9H853 241 aa3.02□□□□□ -1.93
LIG4-201ENST00000356922 DAZ1Q9NQZ3 744 aaKnown RBP3.02□□□□□ -1.93
LIG4-201ENST00000356922 HIGD1AQ9Y241 93 aa3.02□□□□□ -1.93
LIG4-201ENST00000356922 IGHV7-4-1A0A0J9YVY3 117 aa3.02□□□□□ -1.93
LIG4-201ENST00000356922 TEX46H3BTG2 121 aa3.02□□□□□ -1.93
LIG4-201ENST00000356922 JTBO76095 146 aa3.02□□□□□ -1.93
LIG4-201ENST00000356922 APOC3P02656 99 aa3.02□□□□□ -1.93
LIG4-201ENST00000356922 PYYP10082 97 aa3.02□□□□□ -1.93
LIG4-201ENST00000356922 SPP1P10451 314 aa3.02□□□□□ -1.93
LIG4-201ENST00000356922 HLA-DMBP28068 263 aa3.02□□□□□ -1.93
LIG4-201ENST00000356922 PLP1P60201 277 aa3.02□□□□□ -1.93
LIG4-201ENST00000356922 FFAR4Q5NUL3 377 aa3.02□□□□□ -1.93
LIG4-201ENST00000356922 PRR31Q5SQ13 230 aa3.02□□□□□ -1.93
LIG4-201ENST00000356922 C10orf113Q5VZT2 155 aa3.02□□□□□ -1.93
LIG4-201ENST00000356922 TEX261Q6UWH6 196 aa3.02□□□□□ -1.93
LIG4-201ENST00000356922 REC114Q7Z4M0 266 aa3.02□□□□□ -1.93
LIG4-201ENST00000356922 LINC00052Q96N35 136 aa3.02□□□□□ -1.93
LIG4-201ENST00000356922 ATP6V0BQ99437 205 aa3.02□□□□□ -1.93
LIG4-201ENST00000356922 OR51M1Q9H341 326 aa3.02□□□□□ -1.93
LIG4-201ENST00000356922 TMPRSS5Q9H3S3 457 aa3.02□□□□□ -1.93
LIG4-201ENST00000356922 TMEM238LA0A1B0GVL6 79 aa3.02□□□□□ -1.93
LIG4-201ENST00000356922 IGLV1-51P01701 117 aa3.02□□□□□ -1.93
LIG4-201ENST00000356922 CCL20P78556 96 aa3.02□□□□□ -1.93
LIG4-201ENST00000356922 ACOT6Q3I5F7 207 aaPredicted RBP3.02□□□□□ -1.93
LIG4-201ENST00000356922 C4orf48Q5BLP8 95 aa3.02□□□□□ -1.93
LIG4-201ENST00000356922 FAM78BQ5VT40 261 aa3.02□□□□□ -1.93
LIG4-201ENST00000356922 ALKAL2Q6UX46 152 aa3.02□□□□□ -1.93
LIG4-201ENST00000356922 GTSCR1Q86UQ5 136 aa3.02□□□□□ -1.93
LIG4-201ENST00000356922 OR1L4Q8NGR5 311 aa3.02□□□□□ -1.93
LIG4-201ENST00000356922 STOML3Q8TAV4 291 aa3.02□□□□□ -1.93
LIG4-201ENST00000356922 DNAJC4Q9NNZ3 241 aa3.02□□□□□ -1.93
LIG4-201ENST00000356922 RPH3ALQ9UNE2 315 aa3.02□□□□□ -1.93
LIG4-201ENST00000356922 K7EMT4 169 aa3.01□□□□□ -1.93
LIG4-201ENST00000356922 SLC17A3O00476 420 aa3.01□□□□□ -1.93
LIG4-201ENST00000356922 TAAR5O14804 337 aa3.01□□□□□ -1.93
LIG4-201ENST00000356922 CD7P09564 240 aa3.01□□□□□ -1.93
LIG4-201ENST00000356922 TPT1P13693 172 aaKnown RBP3.01□□□□□ -1.93
LIG4-201ENST00000356922 RAB4AP20338 218 aa3.01□□□□□ -1.93
LIG4-201ENST00000356922 GALR1P47211 349 aa3.01□□□□□ -1.93
LIG4-201ENST00000356922 BAP18Q8IXM2 172 aa3.01□□□□□ -1.93
LIG4-201ENST00000356922 GATAD1Q8WUU5 269 aa3.01□□□□□ -1.93
LIG4-201ENST00000356922 BLNKQ8WV28 456 aa3.01□□□□□ -1.93
LIG4-201ENST00000356922 GLMPQ8WWB7 406 aa3.01□□□□□ -1.93
LIG4-201ENST00000356922 GNPNAT1Q96EK6 184 aaPredicted RBP3.01□□□□□ -1.93
LIG4-201ENST00000356922 SLC25A2Q9BXI2 301 aa3.01□□□□□ -1.93
LIG4-201ENST00000356922 GPR61Q9BZJ8 451 aa3.01□□□□□ -1.93
LIG4-201ENST00000356922 TECRQ9NZ01 308 aaKnown RBP3.01□□□□□ -1.93
LIG4-201ENST00000356922 RNF24Q9Y225 148 aa3.01□□□□□ -1.93
LIG4-201ENST00000356922 ZNF256Q9Y2P7 627 aaPredicted RBP3.01□□□□□ -1.93
LIG4-201ENST00000356922 OR10J4P0C629 311 aa3.01□□□□□ -1.93
LIG4-201ENST00000356922 TAS2R45P59539 299 aa3.01□□□□□ -1.93
LIG4-201ENST00000356922 C9orf66Q5T8R8 295 aa3.01□□□□□ -1.93
LIG4-201ENST00000356922 C16orf54Q6UWD8 224 aa3.01□□□□□ -1.93
LIG4-201ENST00000356922 DCANP1Q8TF63 244 aa3.01□□□□□ -1.93
LIG4-201ENST00000356922 SFT2D1Q8WV19 159 aa3.01□□□□□ -1.93
LIG4-201ENST00000356922 PARD6GQ9BYG4 376 aaPredicted RBP3.01□□□□□ -1.93
LIG4-201ENST00000356922 TIMM9Q9Y5J7 89 aa3.01□□□□□ -1.93
LIG4-201ENST00000356922 A0A1B0GV90 55 aa3.01□□□□□ -1.93
LIG4-201ENST00000356922 H3BRN7 92 aa3.01□□□□□ -1.93
LIG4-201ENST00000356922 MPDU1O75352 247 aa3.01□□□□□ -1.93
LIG4-201ENST00000356922 FGF8P55075 233 aaPredicted RBP3.01□□□□□ -1.93
LIG4-201ENST00000356922 RNF182Q8N6D2 247 aa3.01□□□□□ -1.93
LIG4-201ENST00000356922 C16orf92Q96LL3 132 aa3.01□□□□□ -1.93
LIG4-201ENST00000356922 C20orf173Q96LM9 149 aa3.01□□□□□ -1.93
LIG4-201ENST00000356922 SHANK2-AS3Q9BTD1 123 aa3.01□□□□□ -1.93
LIG4-201ENST00000356922 C19orf73Q9NVV2 129 aa3.01□□□□□ -1.93
LIG4-201ENST00000356922 ZNF586Q9NXT0 402 aa3.01□□□□□ -1.93
LIG4-201ENST00000356922 TRAV8-2A0A0B4J237 113 aa3□□□□□ -1.93
LIG4-201ENST00000356922 HELTA6NFD8 242 aa3□□□□□ -1.93
LIG4-201ENST00000356922 NDUFB4O95168 129 aa3□□□□□ -1.93
LIG4-201ENST00000356922 ZNF705DP0CH99 300 aaPredicted RBP3□□□□□ -1.93
LIG4-201ENST00000356922 ZNF705BP0CI00 300 aaPredicted RBP3□□□□□ -1.93
LIG4-201ENST00000356922 GP9P14770 177 aa3□□□□□ -1.93
LIG4-201ENST00000356922 CEBPGP53567 150 aa3□□□□□ -1.93
LIG4-201ENST00000356922 RNF212Q495C1 297 aa3□□□□□ -1.93
LIG4-201ENST00000356922 SAMD5Q5TGI4 173 aa3□□□□□ -1.93
LIG4-201ENST00000356922 GDF5OSQ5U4N7 250 aa3□□□□□ -1.93
LIG4-201ENST00000356922 TCF24Q7RTU0 167 aa3□□□□□ -1.93
LIG4-201ENST00000356922 Q8N1Y9 231 aa3□□□□□ -1.93
LIG4-201ENST00000356922 OR10G4Q8NGN3 311 aa3□□□□□ -1.93
LIG4-201ENST00000356922 OR10G9Q8NGN4 311 aa3□□□□□ -1.93
LIG4-201ENST00000356922 OR10G7Q8NGN6 311 aa3□□□□□ -1.93
LIG4-201ENST00000356922 FAM213BQ8TBF2 198 aa3□□□□□ -1.93
LIG4-201ENST00000356922 RAB24Q969Q5 203 aa3□□□□□ -1.93
LIG4-201ENST00000356922 PRR25Q96S07 402 aa3□□□□□ -1.93
LIG4-201ENST00000356922 ASCL2Q99929 193 aa3□□□□□ -1.93
LIG4-201ENST00000356922 MS4A6AQ9H2W1 248 aa3□□□□□ -1.93
LIG4-201ENST00000356922 ELOA3CA0A087WX78 387 aaPredicted RBP3□□□□□ -1.93
LIG4-201ENST00000356922 ZNF705FA8MVS1 300 aaPredicted RBP3□□□□□ -1.93
LIG4-201ENST00000356922 F6UB75 175 aa3□□□□□ -1.93
LIG4-201ENST00000356922 TCAPO15273 167 aa3□□□□□ -1.93
LIG4-201ENST00000356922 IGLC2P0DOY2 106 aa3□□□□□ -1.93
LIG4-201ENST00000356922 ID1P41134 155 aa3□□□□□ -1.93
LIG4-201ENST00000356922 SNRPD3P62318 126 aaKnown RBP3□□□□□ -1.93
LIG4-201ENST00000356922 RHOBP62745 196 aa3□□□□□ -1.93
LIG4-201ENST00000356922 LCN12Q6JVE5 192 aa3□□□□□ -1.93
LIG4-201ENST00000356922 LCN15Q6UWW0 184 aa3□□□□□ -1.93
LIG4-201ENST00000356922 BPIFA4PQ86YQ2 179 aa3□□□□□ -1.93
LIG4-201ENST00000356922 APRG1Q8IVJ8 170 aa3□□□□□ -1.93
LIG4-201ENST00000356922 CMTM2Q8TAZ6 248 aa3□□□□□ -1.93
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms