RNA–Protein interactions for RNA: ENST00000356786.9

CCDC88B-202, Transcript of coiled-coil domain containing 88B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC88B, Length 4,915 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-202ENST00000356786 NPC2P61916 151 aa15.89■□□□□ 0.13
CCDC88B-202ENST00000356786 TRAV40A0A0B4J280 105 aa15.89■□□□□ 0.13
CCDC88B-202ENST00000356786 WISP1O95388 367 aa15.89■□□□□ 0.13
CCDC88B-202ENST00000356786 ZNF883P0CG24 379 aa15.89■□□□□ 0.13
CCDC88B-202ENST00000356786 TMEM249Q2WGJ8 235 aa15.89■□□□□ 0.13
CCDC88B-202ENST00000356786 IGKV1D-17A0A075B6S4 117 aa15.88■□□□□ 0.13
CCDC88B-202ENST00000356786 TMEM105Q8N8V8 129 aa15.88■□□□□ 0.13
CCDC88B-202ENST00000356786 IGHV2-26A0A0B4J1V2 119 aa15.88■□□□□ 0.13
CCDC88B-202ENST00000356786 GGTLC3B5MD39 225 aa15.88■□□□□ 0.13
CCDC88B-202ENST00000356786 CFHR2P36980 270 aa15.88■□□□□ 0.13
CCDC88B-202ENST00000356786 VDAC2P45880 294 aaPredicted RBP15.88■□□□□ 0.13
CCDC88B-202ENST00000356786 IGFL4Q6B9Z1 124 aa15.88■□□□□ 0.13
CCDC88B-202ENST00000356786 LYPD1Q8N2G4 141 aa15.88■□□□□ 0.13
CCDC88B-202ENST00000356786 RNASE6Q93091 150 aaKnown RBP15.88■□□□□ 0.13
CCDC88B-202ENST00000356786 C9JAW5 83 aa15.87■□□□□ 0.13
CCDC88B-202ENST00000356786 IGHV1-8P0DP01 117 aa15.87■□□□□ 0.13
CCDC88B-202ENST00000356786 C15orf32Q32M92 178 aa15.87■□□□□ 0.13
CCDC88B-202ENST00000356786 OVOL1O14753 267 aa15.87■□□□□ 0.13
CCDC88B-202ENST00000356786 MMP23AO75900 390 aa15.87■□□□□ 0.13
CCDC88B-202ENST00000356786 PAX8Q06710 450 aa15.86■□□□□ 0.13
CCDC88B-202ENST00000356786 HAPLN4Q86UW8 402 aa15.86■□□□□ 0.13
CCDC88B-202ENST00000356786 C14orf178Q8N769 122 aaPredicted RBP15.86■□□□□ 0.13
CCDC88B-202ENST00000356786 TMEM213A2RRL7 107 aa15.86■□□□□ 0.13
CCDC88B-202ENST00000356786 IGHV1-3A0A0C4DH29 117 aa15.86■□□□□ 0.13
CCDC88B-202ENST00000356786 SIGLEC15Q6ZMC9 328 aa15.86■□□□□ 0.13
CCDC88B-202ENST00000356786 ZNF524Q96C55 264 aa15.86■□□□□ 0.13
CCDC88B-202ENST00000356786 PLEKHB2Q96CS7 222 aa15.86■□□□□ 0.13
CCDC88B-202ENST00000356786 LINC00527Q9UJ94 153 aa15.86■□□□□ 0.13
CCDC88B-202ENST00000356786 SPACA3Q8IXA5 215 aa15.86■□□□□ 0.13
CCDC88B-202ENST00000356786 HAX1O00165 279 aa15.85■□□□□ 0.13
CCDC88B-202ENST00000356786 ZNF876PQ49A33 203 aa15.85■□□□□ 0.13
CCDC88B-202ENST00000356786 Q6ZVH6 145 aa15.85■□□□□ 0.13
CCDC88B-202ENST00000356786 DPH3P1Q9H4G8 78 aa15.85■□□□□ 0.13
CCDC88B-202ENST00000356786 TRGV2A0A075B6R0 118 aa15.85■□□□□ 0.13
CCDC88B-202ENST00000356786 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP15.85■□□□□ 0.13
CCDC88B-202ENST00000356786 TNFRSF6BO95407 300 aa15.85■□□□□ 0.13
CCDC88B-202ENST00000356786 WNT2P09544 360 aa15.85■□□□□ 0.13
CCDC88B-202ENST00000356786 SRD5A1P18405 259 aa15.85■□□□□ 0.13
CCDC88B-202ENST00000356786 B3GALT5-AS1P59052 145 aa15.85■□□□□ 0.13
CCDC88B-202ENST00000356786 RCHY1Q96PM5 261 aa15.85■□□□□ 0.13
CCDC88B-202ENST00000356786 COX8AP10176 69 aa15.85■□□□□ 0.13
CCDC88B-202ENST00000356786 ZNF474Q6S9Z5 364 aaPredicted RBP15.85■□□□□ 0.13
CCDC88B-202ENST00000356786 PRSS57Q6UWY2 283 aa15.85■□□□□ 0.13
CCDC88B-202ENST00000356786 ZNF562Q6V9R5 426 aa15.85■□□□□ 0.13
CCDC88B-202ENST00000356786 SIGLEC9Q9Y336 463 aa15.84■□□□□ 0.13
CCDC88B-202ENST00000356786 IGHV1-24A0A0C4DH33 117 aa15.84■□□□□ 0.13
CCDC88B-202ENST00000356786 ZNF492Q9P255 531 aa15.84■□□□□ 0.13
CCDC88B-202ENST00000356786 CT83Q5H943 113 aa15.84■□□□□ 0.13
CCDC88B-202ENST00000356786 MORN3Q6PF18 240 aaPredicted RBP15.84■□□□□ 0.13
CCDC88B-202ENST00000356786 COLCA1Q6ZS62 124 aa15.84■□□□□ 0.13
CCDC88B-202ENST00000356786 CSTL1Q9H114 145 aa15.84■□□□□ 0.13
CCDC88B-202ENST00000356786 BVES-AS1Q5T3Y7 98 aa15.83■□□□□ 0.13
CCDC88B-202ENST00000356786 COA6Q5JTJ3 125 aaKnown RBP15.83■□□□□ 0.12
CCDC88B-202ENST00000356786 K7EP34 96 aa15.83■□□□□ 0.12
CCDC88B-202ENST00000356786 VCYO14598 125 aa15.83■□□□□ 0.12
CCDC88B-202ENST00000356786 VWC2Q2TAL6 325 aa15.83■□□□□ 0.12
CCDC88B-202ENST00000356786 UNQ6494/PRO21346Q6UXR6 183 aa15.83■□□□□ 0.12
CCDC88B-202ENST00000356786 SRRM4A7MD48 611 aaKnown RBP15.83■□□□□ 0.12
CCDC88B-202ENST00000356786 KIR2DL5BA0A0G2JN68 375 aa15.82■□□□□ 0.12
CCDC88B-202ENST00000356786 KIR2DL5BA0A0G2JPC4 375 aa15.82■□□□□ 0.12
CCDC88B-202ENST00000356786 KIR2DL5AQ8N109 375 aa15.82■□□□□ 0.12
CCDC88B-202ENST00000356786 PLSCR4Q9NRQ2 329 aa15.82■□□□□ 0.12
CCDC88B-202ENST00000356786 DUSP14O95147 198 aaKnown RBP15.82■□□□□ 0.12
CCDC88B-202ENST00000356786 FAM104BQ5XKR9 115 aa15.82■□□□□ 0.12
CCDC88B-202ENST00000356786 ABHD17AQ96GS6 310 aa15.82■□□□□ 0.12
CCDC88B-202ENST00000356786 MYLKQ15746 1914 aa15.82■□□□□ 0.12
CCDC88B-202ENST00000356786 NTN3O00634 580 aaPredicted RBP15.82■□□□□ 0.12
CCDC88B-202ENST00000356786 FAM231DQ6ZW35 169 aa15.82■□□□□ 0.12
CCDC88B-202ENST00000356786 C7orf69Q9H7B7 122 aa15.82■□□□□ 0.12
CCDC88B-202ENST00000356786 TMEM14BQ9NUH8 114 aa15.82■□□□□ 0.12
CCDC88B-202ENST00000356786 A0A1W2PPI3 338 aa15.81■□□□□ 0.12
CCDC88B-202ENST00000356786 Q0VFX4 171 aa15.81■□□□□ 0.12
CCDC88B-202ENST00000356786 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP15.81■□□□□ 0.12
CCDC88B-202ENST00000356786 CFAP161Q6P656 301 aa15.81■□□□□ 0.12
CCDC88B-202ENST00000356786 TRAV8-3A0A0A6YYJ7 113 aa15.8■□□□□ 0.12
CCDC88B-202ENST00000356786 SMIM27A0A1W2PRY6 76 aa15.8■□□□□ 0.12
CCDC88B-202ENST00000356786 GAFA1Q96PS6 74 aa15.8■□□□□ 0.12
CCDC88B-202ENST00000356786 ANAPC1Q9H1A4 1944 aa15.8■□□□□ 0.12
CCDC88B-202ENST00000356786 KLF12Q9Y4X4 402 aa15.8■□□□□ 0.12
CCDC88B-202ENST00000356786 NOTCH4Q99466 2003 aa15.8■□□□□ 0.12
CCDC88B-202ENST00000356786 C11orf52Q96A22 123 aa15.8■□□□□ 0.12
CCDC88B-202ENST00000356786 SHANK2-AS3Q9BTD1 123 aa15.8■□□□□ 0.12
CCDC88B-202ENST00000356786 TMEM178BH3BS89 294 aa15.79■□□□□ 0.12
CCDC88B-202ENST00000356786 RNF5Q99942 180 aa15.79■□□□□ 0.12
CCDC88B-202ENST00000356786 ZNRD1Q9P1U0 126 aa15.79■□□□□ 0.12
CCDC88B-202ENST00000356786 TANC1Q9C0D5 1861 aa15.79■□□□□ 0.12
CCDC88B-202ENST00000356786 HIST1H4AP62805 103 aaKnown RBP15.79■□□□□ 0.12
CCDC88B-202ENST00000356786 TRGV11A0A075B6L2 103 aa15.79■□□□□ 0.12
CCDC88B-202ENST00000356786 LINC00158P58513 81 aa15.79■□□□□ 0.12
CCDC88B-202ENST00000356786 NDPQ00604 133 aa15.79■□□□□ 0.12
CCDC88B-202ENST00000356786 C5orf64Q2M2E5 130 aa15.79■□□□□ 0.12
CCDC88B-202ENST00000356786 THADAQ6YHU6 1953 aa15.78■□□□□ 0.12
CCDC88B-202ENST00000356786 A0A1W2PPM0 123 aa15.78■□□□□ 0.12
CCDC88B-202ENST00000356786 RSPO1Q2MKA7 263 aaPredicted RBP15.78■□□□□ 0.12
CCDC88B-202ENST00000356786 C9orf139Q6ZV77 190 aa15.78■□□□□ 0.12
CCDC88B-202ENST00000356786 F8W1H4 67 aa15.78■□□□□ 0.12
CCDC88B-202ENST00000356786 ASPHD1Q5U4P2 390 aa15.78■□□□□ 0.12
CCDC88B-202ENST00000356786 FRMPD3Q5JV73 1810 aa15.78■□□□□ 0.12
CCDC88B-202ENST00000356786 GAGE12HA6NDE8 117 aa15.77■□□□□ 0.12
CCDC88B-202ENST00000356786 CSRP1P21291 193 aaKnown RBP15.77■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 38.6 ms