RNA–Protein interactions for RNA: ENST00000354674.4

SYNE1-203, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 3,154 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-203ENST00000354674 MAP1LC3CQ9BXW4 147 aa8.07□□□□□ -1.12
SYNE1-203ENST00000354674 BPESC1Q9GZL8 116 aa8.07□□□□□ -1.12
SYNE1-203ENST00000354674 IFI27L2Q9H2X8 130 aa8.07□□□□□ -1.12
SYNE1-203ENST00000354674 NPIPB5A8MRT5 1133 aa8.06□□□□□ -1.12
SYNE1-203ENST00000354674 STAG3L2P0CL84 134 aa8.06□□□□□ -1.12
SYNE1-203ENST00000354674 LMO4P61968 165 aa8.06□□□□□ -1.12
SYNE1-203ENST00000354674 ZNF585BQ52M93 769 aa8.06□□□□□ -1.12
SYNE1-203ENST00000354674 NHP2Q9NX24 153 aaKnown RBP8.06□□□□□ -1.12
SYNE1-203ENST00000354674 PROP1O75360 226 aa8.06□□□□□ -1.12
SYNE1-203ENST00000354674 SCGB1A1P11684 91 aa8.06□□□□□ -1.12
SYNE1-203ENST00000354674 FCER1GP30273 86 aa8.06□□□□□ -1.12
SYNE1-203ENST00000354674 CATR1Q13166 79 aa8.06□□□□□ -1.12
SYNE1-203ENST00000354674 SLC25A48Q6ZT89 311 aaKnown RBP8.06□□□□□ -1.12
SYNE1-203ENST00000354674 NRGNQ92686 78 aa8.06□□□□□ -1.12
SYNE1-203ENST00000354674 MRPL16Q9NX20 251 aaKnown RBP8.06□□□□□ -1.12
SYNE1-203ENST00000354674 LRRK2Q5S007 2527 aa8.06□□□□□ -1.12
SYNE1-203ENST00000354674 TGFAP01135 160 aa8.06□□□□□ -1.12
SYNE1-203ENST00000354674 IGHV1-8P0DP01 117 aa8.06□□□□□ -1.12
SYNE1-203ENST00000354674 KRTAP10-9P60411 292 aa8.06□□□□□ -1.12
SYNE1-203ENST00000354674 VKORC1L1Q8N0U8 176 aa8.06□□□□□ -1.12
SYNE1-203ENST00000354674 LINC00311Q8N616 119 aa8.06□□□□□ -1.12
SYNE1-203ENST00000354674 ZNF436-AS1Q8NC38 126 aaPredicted RBP8.06□□□□□ -1.12
SYNE1-203ENST00000354674 LOC389332A0A1B0GUA5 103 aa8.05□□□□□ -1.12
SYNE1-203ENST00000354674 A0A1B0GWB2 263 aa8.05□□□□□ -1.12
SYNE1-203ENST00000354674 J3QR06 171 aa8.05□□□□□ -1.12
SYNE1-203ENST00000354674 GCHFRP30047 84 aa8.05□□□□□ -1.12
SYNE1-203ENST00000354674 DSCR9P59020 149 aa8.05□□□□□ -1.12
SYNE1-203ENST00000354674 FAM120AOSQ5T036 256 aa8.05□□□□□ -1.12
SYNE1-203ENST00000354674 OSR1Q8TAX0 266 aaPredicted RBP8.05□□□□□ -1.12
SYNE1-203ENST00000354674 SPANXB1Q9NS25 103 aaPredicted RBP8.05□□□□□ -1.12
SYNE1-203ENST00000354674 J3QR89 54 aa8.05□□□□□ -1.12
SYNE1-203ENST00000354674 OR5AL1P0C617 328 aa8.05□□□□□ -1.12
SYNE1-203ENST00000354674 FXYD2P54710 66 aa8.05□□□□□ -1.12
SYNE1-203ENST00000354674 RPL32P62910 135 aaKnown RBP8.05□□□□□ -1.12
SYNE1-203ENST00000354674 SEC11AP67812 179 aa8.05□□□□□ -1.12
SYNE1-203ENST00000354674 TMEM14EPQ6UXP3 125 aa8.05□□□□□ -1.12
SYNE1-203ENST00000354674 MIR17HGQ75NE6 70 aa8.05□□□□□ -1.12
SYNE1-203ENST00000354674 NUP35Q8NFH5 326 aa8.05□□□□□ -1.12
SYNE1-203ENST00000354674 ABHD14BQ96IU4 210 aa8.05□□□□□ -1.12
SYNE1-203ENST00000354674 PIMREGQ9BSJ6 248 aa8.05□□□□□ -1.12
SYNE1-203ENST00000354674 NDFIP1Q9BT67 221 aa8.05□□□□□ -1.12
SYNE1-203ENST00000354674 TMUB1Q9BVT8 246 aa8.05□□□□□ -1.12
SYNE1-203ENST00000354674 PLEKHA3Q9HB20 300 aa8.05□□□□□ -1.12
SYNE1-203ENST00000354674 TACC2O95359 2948 aa8.05□□□□□ -1.12
SYNE1-203ENST00000354674 TRBV9A0A0B4J1U6 114 aa8.04□□□□□ -1.12
SYNE1-203ENST00000354674 HIGD1CA8MV81 97 aa8.04□□□□□ -1.12
SYNE1-203ENST00000354674 ZFP36P26651 326 aaKnown RBP8.04□□□□□ -1.12
SYNE1-203ENST00000354674 C1orf229Q6ZS94 237 aaPredicted RBP8.04□□□□□ -1.12
SYNE1-203ENST00000354674 ABHD12Q8N2K0 398 aa8.04□□□□□ -1.12
SYNE1-203ENST00000354674 LEAP2Q969E1 77 aa8.04□□□□□ -1.12
SYNE1-203ENST00000354674 PTH2Q96A98 100 aa8.04□□□□□ -1.12
SYNE1-203ENST00000354674 CELSR2Q9HCU4 2923 aa8.04□□□□□ -1.12
SYNE1-203ENST00000354674 COX8AP10176 69 aa8.04□□□□□ -1.12
SYNE1-203ENST00000354674 BRWD1-AS2P59051 145 aa8.04□□□□□ -1.12
SYNE1-203ENST00000354674 Q8N7P7 452 aa8.04□□□□□ -1.12
SYNE1-203ENST00000354674 OR5A1Q8NGJ0 315 aa8.04□□□□□ -1.12
SYNE1-203ENST00000354674 BEX4Q9NWD9 120 aaPredicted RBP8.04□□□□□ -1.12
SYNE1-203ENST00000354674 USP9YO00507 2555 aaPredicted RBP8.04□□□□□ -1.12
SYNE1-203ENST00000354674 M0R1W7 72 aa8.04□□□□□ -1.12
SYNE1-203ENST00000354674 PF4V1P10720 104 aa8.04□□□□□ -1.12
SYNE1-203ENST00000354674 ARL3P36405 182 aa8.04□□□□□ -1.12
SYNE1-203ENST00000354674 GPR12P47775 334 aa8.04□□□□□ -1.12
SYNE1-203ENST00000354674 RPL30P62888 115 aaKnown RBP8.04□□□□□ -1.12
SYNE1-203ENST00000354674 C8orf86Q6ZUL3 223 aa8.04□□□□□ -1.12
SYNE1-203ENST00000354674 FA2HQ7L5A8 372 aa8.04□□□□□ -1.12
SYNE1-203ENST00000354674 PGLYRP4Q96LB8 373 aa8.04□□□□□ -1.12
SYNE1-203ENST00000354674 HSD17B10Q99714 261 aaKnown RBP8.04□□□□□ -1.12
SYNE1-203ENST00000354674 ASCL2Q99929 193 aa8.04□□□□□ -1.12
SYNE1-203ENST00000354674 C1QTNF4Q9BXJ3 329 aa8.04□□□□□ -1.12
SYNE1-203ENST00000354674 TMEM133Q9H2Q1 129 aa8.04□□□□□ -1.12
SYNE1-203ENST00000354674 TMEM140Q9NV12 185 aa8.04□□□□□ -1.12
SYNE1-203ENST00000354674 PRSS29PA6NIE9 313 aa8.03□□□□□ -1.12
SYNE1-203ENST00000354674 TSPAN13O95857 204 aa8.03□□□□□ -1.12
SYNE1-203ENST00000354674 SMIM17P0DL12 118 aa8.03□□□□□ -1.12
SYNE1-203ENST00000354674 DUTP33316 252 aaKnown RBP8.03□□□□□ -1.12
SYNE1-203ENST00000354674 XGP55808 180 aa8.03□□□□□ -1.12
SYNE1-203ENST00000354674 LRRC75A-AS1Q8N1F1 130 aa8.03□□□□□ -1.12
SYNE1-203ENST00000354674 HARBI1Q96MB7 349 aa8.03□□□□□ -1.12
SYNE1-203ENST00000354674 TPPP3Q9BW30 176 aa8.03□□□□□ -1.12
SYNE1-203ENST00000354674 LIN7CQ9NUP9 197 aaKnown RBP8.03□□□□□ -1.12
SYNE1-203ENST00000354674 VPS13CQ709C8 3753 aa8.03□□□□□ -1.12
SYNE1-203ENST00000354674 CXorf1O96002 111 aa8.03□□□□□ -1.12
SYNE1-203ENST00000354674 BCL6BQ8N143 479 aaPredicted RBP8.03□□□□□ -1.12
SYNE1-203ENST00000354674 MBD6Q96DN6 1003 aa8.03□□□□□ -1.12
SYNE1-203ENST00000354674 VGLL1Q99990 258 aa8.03□□□□□ -1.12
SYNE1-203ENST00000354674 PIGBOS1A0A0B4J2F0 54 aa8.02□□□□□ -1.13
SYNE1-203ENST00000354674 LINC01548A6NM66 108 aa8.02□□□□□ -1.13
SYNE1-203ENST00000354674 LINC00473A8K010 186 aa8.02□□□□□ -1.13
SYNE1-203ENST00000354674 REG1AP05451 166 aa8.02□□□□□ -1.13
SYNE1-203ENST00000354674 FAM106CPP0CH98 169 aa8.02□□□□□ -1.13
SYNE1-203ENST00000354674 SMIM13P0DJ93 91 aa8.02□□□□□ -1.13
SYNE1-203ENST00000354674 SAA2P0DJI9 122 aaPredicted RBP8.02□□□□□ -1.13
SYNE1-203ENST00000354674 FAM106AQ4KMX7 169 aa8.02□□□□□ -1.13
SYNE1-203ENST00000354674 TCTEX1D4Q5JR98 221 aa8.02□□□□□ -1.13
SYNE1-203ENST00000354674 ZNF833PQ6ZTB9 187 aa8.02□□□□□ -1.13
SYNE1-203ENST00000354674 KIR2DL4Q99706 377 aa8.02□□□□□ -1.13
SYNE1-203ENST00000354674 AGRNO00468 2067 aa8.02□□□□□ -1.13
SYNE1-203ENST00000354674 SPTAN1Q13813 2472 aaKnown RBP8.02□□□□□ -1.13
SYNE1-203ENST00000354674 IGHV4-30-2A0A087WSY4 118 aa8.02□□□□□ -1.13
SYNE1-203ENST00000354674 CSN1S1P47710 185 aa8.02□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 49.7 ms