RNA–Protein interactions for RNA: ENST00000332797.10

CCDC28A-201, Transcript of coiled-coil domain containing 28A, humanhuman

TSL 1 (best) BASIC

Gene CCDC28A, Length 1,496 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-201ENST00000332797 SLC25A2Q9BXI2 301 aa11.69□□□□□ -0.54
CCDC28A-201ENST00000332797 HRH4Q9H3N8 390 aa11.69□□□□□ -0.54
CCDC28A-201ENST00000332797 FUT9Q9Y231 359 aa11.69□□□□□ -0.54
CCDC28A-201ENST00000332797 TENM3Q9P273 2699 aa11.68□□□□□ -0.54
CCDC28A-201ENST00000332797 F6UB75 175 aa11.68□□□□□ -0.54
CCDC28A-201ENST00000332797 SLC17A3O00476 420 aa11.68□□□□□ -0.54
CCDC28A-201ENST00000332797 CA1P00915 261 aaPredicted RBP11.68□□□□□ -0.54
CCDC28A-201ENST00000332797 PYYP10082 97 aa11.68□□□□□ -0.54
CCDC28A-201ENST00000332797 HLA-DRB4P13762 266 aa11.68□□□□□ -0.54
CCDC28A-201ENST00000332797 ATP6V0CP27449 155 aa11.68□□□□□ -0.54
CCDC28A-201ENST00000332797 HLA-DMBP28068 263 aa11.68□□□□□ -0.54
CCDC28A-201ENST00000332797 ACOT6Q3I5F7 207 aaPredicted RBP11.68□□□□□ -0.54
CCDC28A-201ENST00000332797 FOXI2Q6ZQN5 318 aa11.68□□□□□ -0.54
CCDC28A-201ENST00000332797 SAV1Q9H4B6 383 aaPredicted RBP11.68□□□□□ -0.54
CCDC28A-201ENST00000332797 TMEM14CQ9P0S9 112 aa11.68□□□□□ -0.54
CCDC28A-201ENST00000332797 HLA-DRB4X5D2U9 266 aa11.68□□□□□ -0.54
CCDC28A-201ENST00000332797 HMSDA8MTL9 139 aa11.67□□□□□ -0.54
CCDC28A-201ENST00000332797 H3BMM0 161 aa11.67□□□□□ -0.54
CCDC28A-201ENST00000332797 RAB2AP61019 212 aa11.67□□□□□ -0.54
CCDC28A-201ENST00000332797 RHOBP62745 196 aa11.67□□□□□ -0.54
CCDC28A-201ENST00000332797 EBLN2Q6P2I7 272 aa11.67□□□□□ -0.54
CCDC28A-201ENST00000332797 Q6ZWC4 215 aa11.67□□□□□ -0.54
CCDC28A-201ENST00000332797 ZNF738Q8NE65 137 aa11.67□□□□□ -0.54
CCDC28A-201ENST00000332797 FAM167A-AS1Q96KT0 104 aa11.67□□□□□ -0.54
CCDC28A-201ENST00000332797 SLC50A1Q9BRV3 221 aa11.67□□□□□ -0.54
CCDC28A-201ENST00000332797 PSMG3Q9BT73 122 aaPredicted RBP11.67□□□□□ -0.54
CCDC28A-201ENST00000332797 SH3BGRL3Q9H299 93 aa11.67□□□□□ -0.54
CCDC28A-201ENST00000332797 TAAR5O14804 337 aa11.66□□□□□ -0.54
CCDC28A-201ENST00000332797 IGKV3-20P01619 116 aa11.66□□□□□ -0.54
CCDC28A-201ENST00000332797 SPP1P10451 314 aa11.66□□□□□ -0.54
CCDC28A-201ENST00000332797 M6PRP20645 277 aa11.66□□□□□ -0.54
CCDC28A-201ENST00000332797 ZNF345Q14585 488 aa11.66□□□□□ -0.54
CCDC28A-201ENST00000332797 GUK1Q16774 197 aa11.66□□□□□ -0.54
CCDC28A-201ENST00000332797 MORN3Q6PF18 240 aaPredicted RBP11.66□□□□□ -0.54
CCDC28A-201ENST00000332797 OR2G3Q8NGZ4 309 aa11.66□□□□□ -0.54
CCDC28A-201ENST00000332797 ZNF331Q9NQX6 463 aaPredicted RBP11.66□□□□□ -0.54
CCDC28A-201ENST00000332797 ZNF586Q9NXT0 402 aa11.66□□□□□ -0.54
CCDC28A-201ENST00000332797 AGRNO00468 2067 aa11.65□□□□□ -0.54
CCDC28A-201ENST00000332797 A0A0J9YX75 114 aa11.65□□□□□ -0.54
CCDC28A-201ENST00000332797 OR7C2O60412 319 aa11.65□□□□□ -0.54
CCDC28A-201ENST00000332797 C1QBP02746 253 aa11.65□□□□□ -0.54
CCDC28A-201ENST00000332797 HIST1H1EP10412 219 aaKnown RBP11.65□□□□□ -0.54
CCDC28A-201ENST00000332797 PSG3Q16557 428 aa11.65□□□□□ -0.54
CCDC28A-201ENST00000332797 FAM122CQ6P4D5 195 aa11.65□□□□□ -0.54
CCDC28A-201ENST00000332797 KCNRGQ8N5I3 272 aa11.65□□□□□ -0.54
CCDC28A-201ENST00000332797 OR4B1Q8NGF8 309 aa11.65□□□□□ -0.54
CCDC28A-201ENST00000332797 OR10G4Q8NGN3 311 aa11.65□□□□□ -0.54
CCDC28A-201ENST00000332797 OR10G9Q8NGN4 311 aa11.65□□□□□ -0.54
CCDC28A-201ENST00000332797 OR10G7Q8NGN6 311 aa11.65□□□□□ -0.54
CCDC28A-201ENST00000332797 BLNKQ8WV28 456 aa11.65□□□□□ -0.54
CCDC28A-201ENST00000332797 GNPNAT1Q96EK6 184 aaPredicted RBP11.65□□□□□ -0.54
CCDC28A-201ENST00000332797 ARPC5LQ9BPX5 153 aa11.65□□□□□ -0.54
CCDC28A-201ENST00000332797 OVOL2Q9BRP0 275 aa11.65□□□□□ -0.54
CCDC28A-201ENST00000332797 OR51M1Q9H341 326 aa11.65□□□□□ -0.54
CCDC28A-201ENST00000332797 TRBV19A0A075B6N1 114 aa11.64□□□□□ -0.55
CCDC28A-201ENST00000332797 SPRY2O43597 315 aa11.64□□□□□ -0.55
CCDC28A-201ENST00000332797 EIF3GO75821 320 aaKnown RBP eCLIP11.64□□□□□ -0.55
CCDC28A-201ENST00000332797 JTBO76095 146 aa11.64□□□□□ -0.55
CCDC28A-201ENST00000332797 PRB4P10163 310 aaPredicted RBP11.64□□□□□ -0.55
CCDC28A-201ENST00000332797 C4BPBP20851 252 aa11.64□□□□□ -0.55
CCDC28A-201ENST00000332797 KHDC3LQ587J8 217 aa11.64□□□□□ -0.55
CCDC28A-201ENST00000332797 SAT2Q96F10 170 aaPredicted RBP11.64□□□□□ -0.55
CCDC28A-201ENST00000332797 PAXXQ9BUH6 204 aa11.64□□□□□ -0.55
CCDC28A-201ENST00000332797 CYTL1Q9NRR1 136 aa11.64□□□□□ -0.55
CCDC28A-201ENST00000332797 TP53TG1Q9Y2A0 90 aa11.64□□□□□ -0.55
CCDC28A-201ENST00000332797 A0A1W2PPV4 95 aa11.63□□□□□ -0.55
CCDC28A-201ENST00000332797 OR10J4P0C629 311 aa11.63□□□□□ -0.55
CCDC28A-201ENST00000332797 ZNF705DP0CH99 300 aaPredicted RBP11.63□□□□□ -0.55
CCDC28A-201ENST00000332797 ZNF705BP0CI00 300 aaPredicted RBP11.63□□□□□ -0.55
CCDC28A-201ENST00000332797 TAS2R45P59539 299 aa11.63□□□□□ -0.55
CCDC28A-201ENST00000332797 SERF2P84101 59 aa11.63□□□□□ -0.55
CCDC28A-201ENST00000332797 CD300CQ08708 224 aa11.63□□□□□ -0.55
CCDC28A-201ENST00000332797 ZFP69Q49AA0 526 aa11.63□□□□□ -0.55
CCDC28A-201ENST00000332797 RPUSD4Q96CM3 377 aaKnown RBP11.63□□□□□ -0.55
CCDC28A-201ENST00000332797 RNF183Q96D59 192 aa11.63□□□□□ -0.55
CCDC28A-201ENST00000332797 HYLS1Q96M11 299 aa11.63□□□□□ -0.55
CCDC28A-201ENST00000332797 STAB2Q8WWQ8 2551 aa11.63□□□□□ -0.55
CCDC28A-201ENST00000332797 A0A0D9SG52 128 aa11.63□□□□□ -0.55
CCDC28A-201ENST00000332797 ZNF705FA8MVS1 300 aaPredicted RBP11.63□□□□□ -0.55
CCDC28A-201ENST00000332797 ZNF253O75346 499 aa11.63□□□□□ -0.55
CCDC28A-201ENST00000332797 MBP02144 154 aa11.63□□□□□ -0.55
CCDC28A-201ENST00000332797 GIG44P09565 113 aaPredicted RBP11.63□□□□□ -0.55
CCDC28A-201ENST00000332797 NUTF2P61970 127 aaKnown RBP11.63□□□□□ -0.55
CCDC28A-201ENST00000332797 UBE2L3P68036 154 aaKnown RBP11.63□□□□□ -0.55
CCDC28A-201ENST00000332797 RNF141Q8WVD5 230 aa11.63□□□□□ -0.55
CCDC28A-201ENST00000332797 FXYD5Q96DB9 178 aa11.63□□□□□ -0.55
CCDC28A-201ENST00000332797 KANTRA0A1W2PQU2 76 aa11.62□□□□□ -0.55
CCDC28A-201ENST00000332797 BCL2L11O43521 198 aa11.62□□□□□ -0.55
CCDC28A-201ENST00000332797 NDUFB4O95168 129 aa11.62□□□□□ -0.55
CCDC28A-201ENST00000332797 NBEAP1P0C6P0 100 aa11.62□□□□□ -0.55
CCDC28A-201ENST00000332797 CDC34P49427 236 aaPredicted RBP11.62□□□□□ -0.55
CCDC28A-201ENST00000332797 FXYD7P58549 80 aa11.62□□□□□ -0.55
CCDC28A-201ENST00000332797 PSG9Q00887 426 aa11.62□□□□□ -0.55
CCDC28A-201ENST00000332797 HIST1H1AQ02539 215 aaPredicted RBP11.62□□□□□ -0.55
CCDC28A-201ENST00000332797 PDE6HQ13956 83 aa11.62□□□□□ -0.55
CCDC28A-201ENST00000332797 TMEM41BQ5BJD5 291 aa11.62□□□□□ -0.55
CCDC28A-201ENST00000332797 ZNF503Q96F45 646 aa11.62□□□□□ -0.55
CCDC28A-201ENST00000332797 CLEC5AQ9NY25 188 aa11.62□□□□□ -0.55
CCDC28A-201ENST00000332797 HMGB3O15347 200 aaKnown RBP11.61□□□□□ -0.55
CCDC28A-201ENST00000332797 DUSP14O95147 198 aaKnown RBP11.61□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 43.6 ms