RNA–Protein interactions for RNA: ENST00000311351.8

LSM1-201, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LSM1, Length 1,147 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-201ENST00000311351 RLN2P04090 185 aa11.72□□□□□ -0.53
LSM1-201ENST00000311351 CXCL3P19876 107 aa11.72□□□□□ -0.53
LSM1-201ENST00000311351 BAXQ07812 192 aa11.72□□□□□ -0.53
LSM1-201ENST00000311351 OPCMLQ14982 345 aa11.72□□□□□ -0.53
LSM1-201ENST00000311351 VWC2Q2TAL6 325 aa11.72□□□□□ -0.53
LSM1-201ENST00000311351 S100A7AQ86SG5 101 aa11.72□□□□□ -0.53
LSM1-201ENST00000311351 STX12Q86Y82 276 aa11.72□□□□□ -0.53
LSM1-201ENST00000311351 C1orf158Q8N1D5 194 aa11.72□□□□□ -0.53
LSM1-201ENST00000311351 C2CD4CQ8TF44 421 aa11.72□□□□□ -0.53
LSM1-201ENST00000311351 NEU1Q99519 415 aa11.72□□□□□ -0.53
LSM1-201ENST00000311351 NMES1Q9C002 83 aa11.72□□□□□ -0.53
LSM1-201ENST00000311351 VPS13DQ5THJ4 4388 aa11.72□□□□□ -0.53
LSM1-201ENST00000311351 H3BTX0 84 aa11.71□□□□□ -0.53
LSM1-201ENST00000311351 M0R2Z0 102 aa11.71□□□□□ -0.53
LSM1-201ENST00000311351 EMP1P54849 157 aa11.71□□□□□ -0.53
LSM1-201ENST00000311351 PRR20EP86478 221 aa11.71□□□□□ -0.53
LSM1-201ENST00000311351 PRR20CP86479 221 aa11.71□□□□□ -0.53
LSM1-201ENST00000311351 PRR20DP86480 221 aa11.71□□□□□ -0.53
LSM1-201ENST00000311351 PRR20BP86481 221 aa11.71□□□□□ -0.53
LSM1-201ENST00000311351 PRR20AP86496 221 aa11.71□□□□□ -0.53
LSM1-201ENST00000311351 LRRC37A5PQ49AS3 106 aa11.71□□□□□ -0.53
LSM1-201ENST00000311351 C10orf113Q5VZT2 155 aa11.71□□□□□ -0.53
LSM1-201ENST00000311351 OR11H7Q8NGC8 314 aa11.71□□□□□ -0.53
LSM1-201ENST00000311351 OR5AC2Q9NZP5 309 aa11.71□□□□□ -0.53
LSM1-201ENST00000311351 KMT2AQ03164 3969 aa11.71□□□□□ -0.54
LSM1-201ENST00000311351 IGLL5B9A064 214 aa11.7□□□□□ -0.54
LSM1-201ENST00000311351 C11orf94C9JXX5 98 aa11.7□□□□□ -0.54
LSM1-201ENST00000311351 SLC17A3O00476 420 aa11.7□□□□□ -0.54
LSM1-201ENST00000311351 S100A11P31949 105 aa11.7□□□□□ -0.54
LSM1-201ENST00000311351 HBG1P69891 147 aa11.7□□□□□ -0.54
LSM1-201ENST00000311351 HBG2P69892 147 aa11.7□□□□□ -0.54
LSM1-201ENST00000311351 RAB31Q13636 194 aa11.7□□□□□ -0.54
LSM1-201ENST00000311351 SPINK13Q1W4C9 94 aa11.7□□□□□ -0.54
LSM1-201ENST00000311351 C12orf74Q32Q52 190 aa11.7□□□□□ -0.54
LSM1-201ENST00000311351 LRRC20Q8TCA0 184 aa11.7□□□□□ -0.54
LSM1-201ENST00000311351 GOLT1BQ9Y3E0 138 aa11.7□□□□□ -0.54
LSM1-201ENST00000311351 BIRC6Q9NR09 4857 aa11.7□□□□□ -0.54
LSM1-201ENST00000311351 TRAV10A0A0B4J240 114 aa11.69□□□□□ -0.54
LSM1-201ENST00000311351 H0YIZ8 118 aa11.69□□□□□ -0.54
LSM1-201ENST00000311351 DUSP14O95147 198 aaKnown RBP11.69□□□□□ -0.54
LSM1-201ENST00000311351 PET100P0DJ07 73 aa11.69□□□□□ -0.54
LSM1-201ENST00000311351 FGF7P21781 194 aa11.69□□□□□ -0.54
LSM1-201ENST00000311351 HIST1H1AQ02539 215 aaPredicted RBP11.69□□□□□ -0.54
LSM1-201ENST00000311351 PSG3Q16557 428 aa11.69□□□□□ -0.54
LSM1-201ENST00000311351 LCN15Q6UWW0 184 aa11.69□□□□□ -0.54
LSM1-201ENST00000311351 BPIFA4PQ86YQ2 179 aa11.69□□□□□ -0.54
LSM1-201ENST00000311351 BAP18Q8IXM2 172 aa11.69□□□□□ -0.54
LSM1-201ENST00000311351 IGF2BP2-AS1Q96M15 143 aa11.69□□□□□ -0.54
LSM1-201ENST00000311351 RNF24Q9Y225 148 aa11.69□□□□□ -0.54
LSM1-201ENST00000311351 RFNGQ9Y644 331 aa11.69□□□□□ -0.54
LSM1-201ENST00000311351 TRAV5A0A0B4J249 113 aa11.68□□□□□ -0.54
LSM1-201ENST00000311351 CRXO43186 299 aaPredicted RBP11.68□□□□□ -0.54
LSM1-201ENST00000311351 CXCL2P19875 107 aa11.68□□□□□ -0.54
LSM1-201ENST00000311351 B2MP61769 119 aa11.68□□□□□ -0.54
LSM1-201ENST00000311351 NHLH2Q02577 135 aa11.68□□□□□ -0.54
LSM1-201ENST00000311351 Q6ZRG5 221 aa11.68□□□□□ -0.54
LSM1-201ENST00000311351 RPP25LQ8N5L8 163 aaKnown RBP11.68□□□□□ -0.54
LSM1-201ENST00000311351 OR8A1Q8NGG7 326 aa11.68□□□□□ -0.54
LSM1-201ENST00000311351 ZNF331Q9NQX6 463 aaPredicted RBP11.68□□□□□ -0.54
LSM1-201ENST00000311351 SLC39A9Q9NUM3 307 aa11.68□□□□□ -0.54
LSM1-201ENST00000311351 PXMP4Q9Y6I8 212 aa11.68□□□□□ -0.54
LSM1-201ENST00000311351 LOC102723971A0A1B0GUV8 181 aa11.67□□□□□ -0.54
LSM1-201ENST00000311351 SMIM9A6NGZ8 99 aa11.67□□□□□ -0.54
LSM1-201ENST00000311351 E5RGE8 158 aa11.67□□□□□ -0.54
LSM1-201ENST00000311351 H3BQ15 152 aa11.67□□□□□ -0.54
LSM1-201ENST00000311351 BOLA2-SMG1P6H3BVE0 249 aa11.67□□□□□ -0.54
LSM1-201ENST00000311351 HBE1P02100 147 aa11.67□□□□□ -0.54
LSM1-201ENST00000311351 IGLC2P0DOY2 106 aa11.67□□□□□ -0.54
LSM1-201ENST00000311351 RPL29P47914 159 aaKnown RBP11.67□□□□□ -0.54
LSM1-201ENST00000311351 H2BFSP57053 126 aa11.67□□□□□ -0.54
LSM1-201ENST00000311351 ATP6V1FQ16864 119 aa11.67□□□□□ -0.54
LSM1-201ENST00000311351 LGALS9CQ6DKI2 356 aa11.67□□□□□ -0.54
LSM1-201ENST00000311351 OR5C1Q8NGR4 320 aa11.67□□□□□ -0.54
LSM1-201ENST00000311351 OR1L4Q8NGR5 311 aa11.67□□□□□ -0.54
LSM1-201ENST00000311351 THAP6Q8TBB0 222 aa11.67□□□□□ -0.54
LSM1-201ENST00000311351 RPUSD4Q96CM3 377 aaKnown RBP11.67□□□□□ -0.54
LSM1-201ENST00000311351 SLC50A1Q9BRV3 221 aa11.67□□□□□ -0.54
LSM1-201ENST00000311351 SLC25A31Q9H0C2 315 aa11.67□□□□□ -0.54
LSM1-201ENST00000311351 DNAJC4Q9NNZ3 241 aa11.67□□□□□ -0.54
LSM1-201ENST00000311351 APLNQ9ULZ1 77 aa11.67□□□□□ -0.54
LSM1-201ENST00000311351 DNAH6Q9C0G6 4158 aa11.66□□□□□ -0.54
LSM1-201ENST00000311351 IGHV4-4A0A075B6R2 117 aa11.66□□□□□ -0.54
LSM1-201ENST00000311351 TRAV12-2A0A075B6T6 113 aa11.66□□□□□ -0.54
LSM1-201ENST00000311351 TMEM189A5PLL7 270 aa11.66□□□□□ -0.54
LSM1-201ENST00000311351 INSP01308 110 aa11.66□□□□□ -0.54
LSM1-201ENST00000311351 RHOBP62745 196 aa11.66□□□□□ -0.54
LSM1-201ENST00000311351 CLINT1Q14677 625 aa11.66□□□□□ -0.54
LSM1-201ENST00000311351 RGS21Q2M5E4 152 aa11.66□□□□□ -0.54
LSM1-201ENST00000311351 GCSAMLQ5JQS6 135 aa11.66□□□□□ -0.54
LSM1-201ENST00000311351 PFDN5Q99471 154 aa11.66□□□□□ -0.54
LSM1-201ENST00000311351 TMEM208Q9BTX3 173 aa11.66□□□□□ -0.54
LSM1-201ENST00000311351 NPCDR1Q9BY65 106 aa11.66□□□□□ -0.54
LSM1-201ENST00000311351 YTHDF2Q9Y5A9 579 aaKnown RBP11.66□□□□□ -0.54
LSM1-201ENST00000311351 DEFB131BA0A096LNP1 70 aa11.65□□□□□ -0.54
LSM1-201ENST00000311351 AMBPP02760 352 aa11.65□□□□□ -0.54
LSM1-201ENST00000311351 PRM2P04554 102 aa11.65□□□□□ -0.54
LSM1-201ENST00000311351 SPART-AS1P0CW21 52 aa11.65□□□□□ -0.54
LSM1-201ENST00000311351 RRN3P1Q2M238 152 aa11.65□□□□□ -0.54
LSM1-201ENST00000311351 FAM222AQ5U5X8 452 aa11.65□□□□□ -0.54
LSM1-201ENST00000311351 PPP1R1CQ8WVI7 109 aa11.65□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 93.1 ms