RNA–Protein interactions for RNA: ENST00000265745.13

VPS41-201, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 2

Gene VPS41, Length 769 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-201ENST00000265745 CNPY1Q3B7I2 92 aa6.92□□□□□ -1.3
VPS41-201ENST00000265745 RNF182Q8N6D2 247 aa6.92□□□□□ -1.3
VPS41-201ENST00000265745 OR10P1Q8NGE3 313 aa6.92□□□□□ -1.3
VPS41-201ENST00000265745 FAM210BQ96KR6 192 aa6.92□□□□□ -1.3
VPS41-201ENST00000265745 IGF2BP2-AS1Q96M15 143 aa6.92□□□□□ -1.3
VPS41-201ENST00000265745 NIPSNAP3BQ9BS92 247 aa6.92□□□□□ -1.3
VPS41-201ENST00000265745 NPVFQ9HCQ7 196 aa6.92□□□□□ -1.3
VPS41-201ENST00000265745 GSKIPQ9P0R6 139 aa6.92□□□□□ -1.3
VPS41-201ENST00000265745 YTHDF2Q9Y5A9 579 aaKnown RBP6.92□□□□□ -1.3
VPS41-201ENST00000265745 LOC102723971A0A1B0GUV8 181 aa6.91□□□□□ -1.3
VPS41-201ENST00000265745 C7orf66A4D0T2 115 aa6.91□□□□□ -1.3
VPS41-201ENST00000265745 CRXO43186 299 aaPredicted RBP6.91□□□□□ -1.3
VPS41-201ENST00000265745 TSC22D2O75157 780 aa6.91□□□□□ -1.3
VPS41-201ENST00000265745 DUSP14O95147 198 aaKnown RBP6.91□□□□□ -1.3
VPS41-201ENST00000265745 MBPP02686 304 aaPredicted RBP6.91□□□□□ -1.3
VPS41-201ENST00000265745 OR5G3P0C626 314 aa6.91□□□□□ -1.3
VPS41-201ENST00000265745 FGL1Q08830 312 aa6.91□□□□□ -1.3
VPS41-201ENST00000265745 ARL16Q0P5N6 197 aa6.91□□□□□ -1.3
VPS41-201ENST00000265745 PATE2Q6UY27 113 aa6.91□□□□□ -1.3
VPS41-201ENST00000265745 ZBTB8BQ8NAP8 495 aaPredicted RBP6.91□□□□□ -1.3
VPS41-201ENST00000265745 OR11H7Q8NGC8 314 aa6.91□□□□□ -1.3
VPS41-201ENST00000265745 UHRF2Q96PU4 802 aa6.91□□□□□ -1.3
VPS41-201ENST00000265745 RCL1Q9Y2P8 373 aaKnown RBP6.91□□□□□ -1.3
VPS41-201ENST00000265745 A0A087X0K7 114 aa6.9□□□□□ -1.3
VPS41-201ENST00000265745 M0R2Z0 102 aa6.9□□□□□ -1.3
VPS41-201ENST00000265745 PRM2P04554 102 aa6.9□□□□□ -1.3
VPS41-201ENST00000265745 CXCL3P19876 107 aa6.9□□□□□ -1.3
VPS41-201ENST00000265745 SLC38A11Q08AI6 406 aa6.9□□□□□ -1.3
VPS41-201ENST00000265745 SPINK13Q1W4C9 94 aa6.9□□□□□ -1.3
VPS41-201ENST00000265745 PXDC1Q5TGL8 231 aa6.9□□□□□ -1.3
VPS41-201ENST00000265745 S100A7AQ86SG5 101 aa6.9□□□□□ -1.3
VPS41-201ENST00000265745 ZNF738Q8NE65 137 aa6.9□□□□□ -1.3
VPS41-201ENST00000265745 TMEM208Q9BTX3 173 aa6.9□□□□□ -1.3
VPS41-201ENST00000265745 GGACTQ9BVM4 153 aa6.9□□□□□ -1.3
VPS41-201ENST00000265745 ARL6Q9H0F7 186 aa6.9□□□□□ -1.3
VPS41-201ENST00000265745 ARV1Q9H2C2 271 aa6.9□□□□□ -1.3
VPS41-201ENST00000265745 ZNF705GA8MUZ8 300 aaPredicted RBP6.89□□□□□ -1.31
VPS41-201ENST00000265745 GOSR2O14653 212 aa6.89□□□□□ -1.31
VPS41-201ENST00000265745 AGPAT2O15120 278 aa6.89□□□□□ -1.31
VPS41-201ENST00000265745 MRPS12O15235 138 aaKnown RBP6.89□□□□□ -1.31
VPS41-201ENST00000265745 LYRM1O43325 122 aa6.89□□□□□ -1.31
VPS41-201ENST00000265745 PLA2G1BP04054 148 aaKnown RBP6.89□□□□□ -1.31
VPS41-201ENST00000265745 TCRBP04435 133 aa6.89□□□□□ -1.31
VPS41-201ENST00000265745 B2MP61769 119 aa6.89□□□□□ -1.31
VPS41-201ENST00000265745 PSG3Q16557 428 aa6.89□□□□□ -1.31
VPS41-201ENST00000265745 LINC00336Q6ZUF6 198 aa6.89□□□□□ -1.31
VPS41-201ENST00000265745 OR8A1Q8NGG7 326 aa6.89□□□□□ -1.31
VPS41-201ENST00000265745 C20orf85Q9H1P6 137 aa6.89□□□□□ -1.31
VPS41-201ENST00000265745 MGAT4CQ9UBM8 478 aa6.89□□□□□ -1.31
VPS41-201ENST00000265745 RNF24Q9Y225 148 aa6.89□□□□□ -1.31
VPS41-201ENST00000265745 TRAV12-2A0A075B6T6 113 aa6.88□□□□□ -1.31
VPS41-201ENST00000265745 PRSS29PA6NIE9 313 aa6.88□□□□□ -1.31
VPS41-201ENST00000265745 BOLA2-SMG1P6H3BVE0 249 aa6.88□□□□□ -1.31
VPS41-201ENST00000265745 CCSO14618 274 aa6.88□□□□□ -1.31
VPS41-201ENST00000265745 INSP01308 110 aa6.88□□□□□ -1.31
VPS41-201ENST00000265745 HTN3P15516 51 aa6.88□□□□□ -1.31
VPS41-201ENST00000265745 TSPOP30536 169 aa6.88□□□□□ -1.31
VPS41-201ENST00000265745 DAD1P61803 113 aa6.88□□□□□ -1.31
VPS41-201ENST00000265745 LINC00305Q7Z4B0 112 aa6.88□□□□□ -1.31
VPS41-201ENST00000265745 ZNF546Q86UE3 836 aa6.88□□□□□ -1.31
VPS41-201ENST00000265745 BAP18Q8IXM2 172 aa6.88□□□□□ -1.31
VPS41-201ENST00000265745 LRRC20Q8TCA0 184 aa6.88□□□□□ -1.31
VPS41-201ENST00000265745 TMEM37Q8WXS4 190 aa6.88□□□□□ -1.31
VPS41-201ENST00000265745 RPUSD4Q96CM3 377 aaKnown RBP6.88□□□□□ -1.31
VPS41-201ENST00000265745 NDUFA13Q9P0J0 144 aa6.88□□□□□ -1.31
VPS41-201ENST00000265745 TRAV6A0A075B6T7 132 aa6.87□□□□□ -1.31
VPS41-201ENST00000265745 PLAC8L1A1L4L8 177 aa6.87□□□□□ -1.31
VPS41-201ENST00000265745 LYRM9A8MSI8 78 aa6.87□□□□□ -1.31
VPS41-201ENST00000265745 M0R2N4 97 aa6.87□□□□□ -1.31
VPS41-201ENST00000265745 RTL8CO15255 209 aa6.87□□□□□ -1.31
VPS41-201ENST00000265745 CXCL2P19875 107 aa6.87□□□□□ -1.31
VPS41-201ENST00000265745 AZU1P20160 251 aa6.87□□□□□ -1.31
VPS41-201ENST00000265745 RHOBP62745 196 aa6.87□□□□□ -1.31
VPS41-201ENST00000265745 HIST1H1AQ02539 215 aaPredicted RBP6.87□□□□□ -1.31
VPS41-201ENST00000265745 ZNF846Q147U1 533 aa6.87□□□□□ -1.31
VPS41-201ENST00000265745 LGALS9BQ3B8N2 356 aa6.87□□□□□ -1.31
VPS41-201ENST00000265745 MORN5Q5VZ52 161 aa6.87□□□□□ -1.31
VPS41-201ENST00000265745 TMEM88Q6PEY1 159 aa6.87□□□□□ -1.31
VPS41-201ENST00000265745 ZNF431Q8TF32 576 aaPredicted RBP6.87□□□□□ -1.31
VPS41-201ENST00000265745 LINC01587Q99440 93 aa6.87□□□□□ -1.31
VPS41-201ENST00000265745 MGST2Q99735 147 aa6.87□□□□□ -1.31
VPS41-201ENST00000265745 C11orf1Q9H5F2 150 aa6.87□□□□□ -1.31
VPS41-201ENST00000265745 ZNF331Q9NQX6 463 aaPredicted RBP6.87□□□□□ -1.31
VPS41-201ENST00000265745 NUDT15Q9NV35 164 aa6.87□□□□□ -1.31
VPS41-201ENST00000265745 HERC2O95714 4834 aa6.86□□□□□ -1.31
VPS41-201ENST00000265745 DNAH6Q9C0G6 4158 aa6.86□□□□□ -1.31
VPS41-201ENST00000265745 A0A1B0GVY2 172 aa6.86□□□□□ -1.31
VPS41-201ENST00000265745 C5orf51A6NDU8 294 aa6.86□□□□□ -1.31
VPS41-201ENST00000265745 FAM25EA8MYX2 175 aa6.86□□□□□ -1.31
VPS41-201ENST00000265745 L7N2F9 121 aa6.86□□□□□ -1.31
VPS41-201ENST00000265745 CST7O76096 145 aa6.86□□□□□ -1.31
VPS41-201ENST00000265745 SNRPCP09234 159 aaKnown RBP6.86□□□□□ -1.31
VPS41-201ENST00000265745 PRB4P10163 310 aaPredicted RBP6.86□□□□□ -1.31
VPS41-201ENST00000265745 CAV2P51636 162 aa6.86□□□□□ -1.31
VPS41-201ENST00000265745 TAS2R60P59551 318 aa6.86□□□□□ -1.31
VPS41-201ENST00000265745 VAMP2P63027 116 aa6.86□□□□□ -1.31
VPS41-201ENST00000265745 IL15RAQ13261 267 aa6.86□□□□□ -1.31
VPS41-201ENST00000265745 RAB31Q13636 194 aa6.86□□□□□ -1.31
VPS41-201ENST00000265745 RNF212Q495C1 297 aa6.86□□□□□ -1.31
VPS41-201ENST00000265745 LCN15Q6UWW0 184 aa6.86□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms