RNA–Protein interactions for RNA: ENST00000265560.8

USP4-201, Transcript of ubiquitin specific peptidase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP4, Length 3,126 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-201ENST00000265560 CD5LO43866 347 aa12.67□□□□□ -0.38
USP4-201ENST00000265560 RAB5AP20339 215 aa12.67□□□□□ -0.38
USP4-201ENST00000265560 TM4SF20Q53R12 229 aa12.67□□□□□ -0.38
USP4-201ENST00000265560 TEX38Q6PEX7 206 aa12.67□□□□□ -0.38
USP4-201ENST00000265560 BAGE2Q86Y30 109 aa12.67□□□□□ -0.38
USP4-201ENST00000265560 RNF182Q8N6D2 247 aa12.67□□□□□ -0.38
USP4-201ENST00000265560 YPEL4Q96NS1 127 aa12.67□□□□□ -0.38
USP4-201ENST00000265560 ZNF785A8K8V0 405 aa12.66□□□□□ -0.38
USP4-201ENST00000265560 IGHG4P01861 327 aa12.66□□□□□ -0.38
USP4-201ENST00000265560 TCRAP04437 139 aa12.66□□□□□ -0.38
USP4-201ENST00000265560 GALR1P47211 349 aa12.66□□□□□ -0.38
USP4-201ENST00000265560 DEFB136Q30KP8 78 aa12.66□□□□□ -0.38
USP4-201ENST00000265560 ARL2-SNX15V9GYD0 113 aa12.66□□□□□ -0.38
USP4-201ENST00000265560 NOTCH3Q9UM47 2321 aa12.66□□□□□ -0.38
USP4-201ENST00000265560 UBE2G1P62253 170 aa12.66□□□□□ -0.38
USP4-201ENST00000265560 SPINK4O60575 86 aa12.66□□□□□ -0.38
USP4-201ENST00000265560 SRD5A1P18405 259 aa12.66□□□□□ -0.38
USP4-201ENST00000265560 RELQ04864 619 aaPredicted RBP12.66□□□□□ -0.38
USP4-201ENST00000265560 KHDC1LQ5JSQ8 128 aa12.66□□□□□ -0.38
USP4-201ENST00000265560 C5orf17Q8NAS9 161 aa12.66□□□□□ -0.38
USP4-201ENST00000265560 USMG5Q96IX5 58 aa12.66□□□□□ -0.38
USP4-201ENST00000265560 IGF2BP2-AS1Q96M15 143 aa12.66□□□□□ -0.38
USP4-201ENST00000265560 DUX3Q96PT4 197 aa12.66□□□□□ -0.38
USP4-201ENST00000265560 METTL26Q96S19 204 aa12.66□□□□□ -0.38
USP4-201ENST00000265560 SERTAD4Q9NUC0 356 aa12.66□□□□□ -0.38
USP4-201ENST00000265560 MLXQ9UH92 298 aa12.66□□□□□ -0.38
USP4-201ENST00000265560 PRNTQ86SH4 94 aa12.65□□□□□ -0.38
USP4-201ENST00000265560 TUBA4BQ9H853 241 aa12.65□□□□□ -0.38
USP4-201ENST00000265560 GAR1Q9NY12 217 aaKnown RBP12.65□□□□□ -0.38
USP4-201ENST00000265560 RPL7P18124 248 aaKnown RBP12.65□□□□□ -0.38
USP4-201ENST00000265560 TCL1AP56279 114 aa12.64□□□□□ -0.39
USP4-201ENST00000265560 RPL11P62913 178 aaKnown RBP12.64□□□□□ -0.39
USP4-201ENST00000265560 SLC35B1P78383 322 aa12.64□□□□□ -0.39
USP4-201ENST00000265560 PRDM13Q9H4Q3 707 aa12.64□□□□□ -0.39
USP4-201ENST00000265560 OTORQ9NRC9 128 aa12.64□□□□□ -0.39
USP4-201ENST00000265560 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP12.64□□□□□ -0.39
USP4-201ENST00000265560 ATG101Q9BSB4 218 aa12.64□□□□□ -0.39
USP4-201ENST00000265560 IGKV2-40A0A087WW87 121 aaPredicted RBP12.64□□□□□ -0.39
USP4-201ENST00000265560 A0A0G2JLM5 398 aa12.64□□□□□ -0.39
USP4-201ENST00000265560 C9JCJ5 164 aa12.64□□□□□ -0.39
USP4-201ENST00000265560 GGCTO75223 188 aaKnown RBP12.64□□□□□ -0.39
USP4-201ENST00000265560 LY6G6DO95868 133 aa12.64□□□□□ -0.39
USP4-201ENST00000265560 IGKV2D-40P01614 121 aaPredicted RBP12.64□□□□□ -0.39
USP4-201ENST00000265560 OR10G8Q8NGN5 311 aa12.64□□□□□ -0.39
USP4-201ENST00000265560 CDC42EP3Q9UKI2 254 aa12.64□□□□□ -0.39
USP4-201ENST00000265560 PEF1Q9UBV8 284 aaKnown RBP12.63□□□□□ -0.39
USP4-201ENST00000265560 PFN1P07737 140 aaKnown RBP12.63□□□□□ -0.39
USP4-201ENST00000265560 FRMD6-AS1P0C7T7 363 aa12.62□□□□□ -0.39
USP4-201ENST00000265560 DEFB1P60022 68 aa12.62□□□□□ -0.39
USP4-201ENST00000265560 LINC00322Q6ZN03 302 aaPredicted RBP12.62□□□□□ -0.39
USP4-201ENST00000265560 KLHDC1Q8N7A1 406 aa12.62□□□□□ -0.39
USP4-201ENST00000265560 FAM210BQ96KR6 192 aa12.62□□□□□ -0.39
USP4-201ENST00000265560 TENM1Q9UKZ4 2725 aa12.62□□□□□ -0.39
USP4-201ENST00000265560 ATRQ13535 2644 aa12.62□□□□□ -0.39
USP4-201ENST00000265560 PRR31Q5SQ13 230 aa12.62□□□□□ -0.39
USP4-201ENST00000265560 Q6ZSV7 163 aa12.62□□□□□ -0.39
USP4-201ENST00000265560 H3BUA1 57 aa12.62□□□□□ -0.39
USP4-201ENST00000265560 CTDSP1Q9GZU7 261 aa12.62□□□□□ -0.39
USP4-201ENST00000265560 AAMDCQ9H7C9 122 aa12.62□□□□□ -0.39
USP4-201ENST00000265560 PRAC2D3DTV9 90 aa12.61□□□□□ -0.39
USP4-201ENST00000265560 Q8TAT8 98 aa12.61□□□□□ -0.39
USP4-201ENST00000265560 TMEM242Q9NWH2 141 aa12.61□□□□□ -0.39
USP4-201ENST00000265560 HAX1O00165 279 aa12.61□□□□□ -0.39
USP4-201ENST00000265560 TMEM183BQ1AE95 376 aa12.61□□□□□ -0.39
USP4-201ENST00000265560 ANAPC16Q96DE5 110 aa12.61□□□□□ -0.39
USP4-201ENST00000265560 IGLV2-11P01706 119 aa12.6□□□□□ -0.39
USP4-201ENST00000265560 TRGC2P03986 189 aa12.6□□□□□ -0.39
USP4-201ENST00000265560 ZNF705DP0CH99 300 aaPredicted RBP12.6□□□□□ -0.39
USP4-201ENST00000265560 ZNF705BP0CI00 300 aaPredicted RBP12.6□□□□□ -0.39
USP4-201ENST00000265560 IBA57Q5T440 356 aaKnown RBP12.6□□□□□ -0.39
USP4-201ENST00000265560 S100A7AQ86SG5 101 aa12.6□□□□□ -0.39
USP4-201ENST00000265560 CXorf65A6NEN9 183 aa12.6□□□□□ -0.39
USP4-201ENST00000265560 NDUFS6O75380 124 aaKnown RBP12.6□□□□□ -0.39
USP4-201ENST00000265560 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa12.6□□□□□ -0.39
USP4-201ENST00000265560 GBGT1Q8N5D6 347 aa12.6□□□□□ -0.39
USP4-201ENST00000265560 SYNJ2BPP57105 145 aa12.6□□□□□ -0.39
USP4-201ENST00000265560 RPEL1Q2QD12 228 aa12.6□□□□□ -0.39
USP4-201ENST00000265560 TCTEX1D4Q5JR98 221 aa12.6□□□□□ -0.39
USP4-201ENST00000265560 AGRNO00468 2067 aa12.59□□□□□ -0.39
USP4-201ENST00000265560 IGHV4OR15-8A0A075B7B6 117 aa12.59□□□□□ -0.39
USP4-201ENST00000265560 A0A087WW49 117 aa12.59□□□□□ -0.39
USP4-201ENST00000265560 DIRC3C9JPN6 131 aa12.59□□□□□ -0.39
USP4-201ENST00000265560 NDUFA4O00483 81 aa12.59□□□□□ -0.39
USP4-201ENST00000265560 TAS2R60P59551 318 aa12.59□□□□□ -0.39
USP4-201ENST00000265560 VGLL1Q99990 258 aa12.59□□□□□ -0.39
USP4-201ENST00000265560 V9GYV3 84 aa12.59□□□□□ -0.39
USP4-201ENST00000265560 A0A1W2PRX2 142 aa12.59□□□□□ -0.39
USP4-201ENST00000265560 GCGP01275 180 aa12.59□□□□□ -0.39
USP4-201ENST00000265560 S100PP25815 95 aa12.59□□□□□ -0.39
USP4-201ENST00000265560 ERCC8Q13216 396 aa12.59□□□□□ -0.39
USP4-201ENST00000265560 GPR82Q96P67 336 aa12.59□□□□□ -0.39
USP4-201ENST00000265560 LOC105371267A0A1B0GV96 52 aa12.58□□□□□ -0.4
USP4-201ENST00000265560 ZNF705GA8MUZ8 300 aaPredicted RBP12.58□□□□□ -0.4
USP4-201ENST00000265560 C8orf49Q96NF6 230 aa12.58□□□□□ -0.4
USP4-201ENST00000265560 KLF12Q9Y4X4 402 aa12.58□□□□□ -0.4
USP4-201ENST00000265560 WFDC3Q8IUB2 231 aa12.58□□□□□ -0.4
USP4-201ENST00000265560 RHPN1-AS1Q9BWJ2 59 aa12.58□□□□□ -0.4
USP4-201ENST00000265560 ZNF331Q9NQX6 463 aaPredicted RBP12.58□□□□□ -0.4
USP4-201ENST00000265560 PRELID1Q9Y255 219 aa12.58□□□□□ -0.4
USP4-201ENST00000265560 INAFM1C9JVW0 142 aa12.57□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 59.9 ms