RNA–Protein interactions for RNA: ENST00000264012.8

CDH3-201, Transcript of cadherin 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CDH3, Length 4,929 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3-201ENST00000264012 MTURNQ8N3F0 131 aa11.29□□□□□ -0.6
CDH3-201ENST00000264012 SHANK2-AS3Q9BTD1 123 aa11.29□□□□□ -0.6
CDH3-201ENST00000264012 JKAMPQ9P055 326 aa11.29□□□□□ -0.6
CDH3-201ENST00000264012 CYSLTR1Q9Y271 337 aa11.29□□□□□ -0.6
CDH3-201ENST00000264012 SRRM4A7MD48 611 aaKnown RBP11.28□□□□□ -0.6
CDH3-201ENST00000264012 BEX4Q9NWD9 120 aaPredicted RBP11.28□□□□□ -0.6
CDH3-201ENST00000264012 K7EM74 188 aa11.28□□□□□ -0.6
CDH3-201ENST00000264012 ORMDL2Q53FV1 153 aa11.28□□□□□ -0.6
CDH3-201ENST00000264012 LINC00311Q8N616 119 aa11.28□□□□□ -0.6
CDH3-201ENST00000264012 NUP35Q8NFH5 326 aa11.28□□□□□ -0.6
CDH3-201ENST00000264012 SSC4DQ8WTU2 575 aa11.28□□□□□ -0.6
CDH3-201ENST00000264012 LINC00479Q96M42 142 aa11.28□□□□□ -0.6
CDH3-201ENST00000264012 VCX2Q9H322 139 aa11.28□□□□□ -0.6
CDH3-201ENST00000264012 H3BRM9 83 aa11.28□□□□□ -0.6
CDH3-201ENST00000264012 IFI27P40305 119 aaPredicted RBP11.28□□□□□ -0.6
CDH3-201ENST00000264012 Q8NFD4 153 aa11.28□□□□□ -0.6
CDH3-201ENST00000264012 DLEU1O43261 78 aa11.28□□□□□ -0.6
CDH3-201ENST00000264012 ACTL10Q5JWF8 245 aa11.28□□□□□ -0.6
CDH3-201ENST00000264012 SP5Q6BEB4 398 aaPredicted RBP11.28□□□□□ -0.6
CDH3-201ENST00000264012 RASL11AQ6T310 242 aa11.28□□□□□ -0.6
CDH3-201ENST00000264012 IGFL2Q6UWQ7 119 aa11.28□□□□□ -0.6
CDH3-201ENST00000264012 NCR2O95944 276 aa11.27□□□□□ -0.6
CDH3-201ENST00000264012 ATP6V0E1O15342 81 aa11.27□□□□□ -0.61
CDH3-201ENST00000264012 SH2D1AO60880 128 aa11.27□□□□□ -0.61
CDH3-201ENST00000264012 RNF166Q96A37 237 aaPredicted RBP11.27□□□□□ -0.61
CDH3-201ENST00000264012 RHPN1-AS1Q9BWJ2 59 aa11.27□□□□□ -0.61
CDH3-201ENST00000264012 NDUFS6O75380 124 aaKnown RBP11.27□□□□□ -0.61
CDH3-201ENST00000264012 TCF15Q12870 199 aa11.27□□□□□ -0.61
CDH3-201ENST00000264012 D6R8Y8 96 aa11.27□□□□□ -0.61
CDH3-201ENST00000264012 ARFGEF3Q5TH69 2177 aa11.27□□□□□ -0.61
CDH3-201ENST00000264012 IFI27L1Q96BM0 104 aa11.27□□□□□ -0.61
CDH3-201ENST00000264012 KIF26AQ9ULI4 1882 aaPredicted RBP11.27□□□□□ -0.61
CDH3-201ENST00000264012 RNF223E7ERA6 249 aa11.26□□□□□ -0.61
CDH3-201ENST00000264012 FCN3O75636 299 aa11.26□□□□□ -0.61
CDH3-201ENST00000264012 LINC00477Q96M19 166 aa11.26□□□□□ -0.61
CDH3-201ENST00000264012 MED13Q9UHV7 2174 aa11.26□□□□□ -0.61
CDH3-201ENST00000264012 EP400Q96L91 3159 aa11.26□□□□□ -0.61
CDH3-201ENST00000264012 OVOL3O00110 214 aa11.26□□□□□ -0.61
CDH3-201ENST00000264012 TOMM7Q9P0U1 55 aa11.26□□□□□ -0.61
CDH3-201ENST00000264012 IGHV2-70DA0A0C4DH43 119 aa11.26□□□□□ -0.61
CDH3-201ENST00000264012 SAP30O75446 220 aa11.26□□□□□ -0.61
CDH3-201ENST00000264012 MRPL16Q9NX20 251 aaKnown RBP11.26□□□□□ -0.61
CDH3-201ENST00000264012 DPM2O94777 84 aa11.26□□□□□ -0.61
CDH3-201ENST00000264012 NDUFB8O95169 186 aa11.26□□□□□ -0.61
CDH3-201ENST00000264012 FAM110DQ8TAY7 271 aaPredicted RBP11.26□□□□□ -0.61
CDH3-201ENST00000264012 IGHV2-70P01814 119 aa11.25□□□□□ -0.61
CDH3-201ENST00000264012 IGHV2-5P01817 119 aa11.25□□□□□ -0.61
CDH3-201ENST00000264012 TMEM256Q8N2U0 113 aa11.25□□□□□ -0.61
CDH3-201ENST00000264012 OR13C6PQ8NH95 151 aa11.25□□□□□ -0.61
CDH3-201ENST00000264012 IGHV1-69DA0A0B4J2H0 117 aa11.25□□□□□ -0.61
CDH3-201ENST00000264012 IGHV1-69P01742 117 aa11.25□□□□□ -0.61
CDH3-201ENST00000264012 GATA3P23771 443 aa11.25□□□□□ -0.61
CDH3-201ENST00000264012 PDE6HQ13956 83 aa11.25□□□□□ -0.61
CDH3-201ENST00000264012 Q86TA4 180 aa11.25□□□□□ -0.61
CDH3-201ENST00000264012 WT1-ASQ06250 92 aa11.25□□□□□ -0.61
CDH3-201ENST00000264012 ZNF664Q8N3J9 261 aa11.25□□□□□ -0.61
CDH3-201ENST00000264012 DAZ1Q9NQZ3 744 aaKnown RBP11.25□□□□□ -0.61
CDH3-201ENST00000264012 C11orf53Q8IXP5 236 aa11.25□□□□□ -0.61
CDH3-201ENST00000264012 PLCE1Q9P212 2302 aa11.25□□□□□ -0.61
CDH3-201ENST00000264012 MAPK1IP1LQ8NDC0 245 aa11.24□□□□□ -0.61
CDH3-201ENST00000264012 KAAG1Q9UBP8 84 aa11.24□□□□□ -0.61
CDH3-201ENST00000264012 SRCAPQ6ZRS2 3230 aa11.24□□□□□ -0.61
CDH3-201ENST00000264012 YPEL3P61236 119 aaPredicted RBP11.24□□□□□ -0.61
CDH3-201ENST00000264012 TPSG1Q9NRR2 321 aa11.24□□□□□ -0.61
CDH3-201ENST00000264012 ANKHD1Q8IWZ3 2542 aaKnown RBP11.24□□□□□ -0.61
CDH3-201ENST00000264012 TRAV12-3A0A0B4J271 114 aa11.24□□□□□ -0.61
CDH3-201ENST00000264012 TRGV4A0A0C4DH28 118 aa11.24□□□□□ -0.61
CDH3-201ENST00000264012 G3V318 75 aa11.24□□□□□ -0.61
CDH3-201ENST00000264012 DIAPH2-AS1Q14236 149 aa11.24□□□□□ -0.61
CDH3-201ENST00000264012 FGF23Q9GZV9 251 aaPredicted RBP11.24□□□□□ -0.61
CDH3-201ENST00000264012 APOMO95445 188 aa11.23□□□□□ -0.61
CDH3-201ENST00000264012 IGF2-ASQ6U949 168 aa11.23□□□□□ -0.61
CDH3-201ENST00000264012 LCNL1Q6ZST4 164 aa11.23□□□□□ -0.61
CDH3-201ENST00000264012 KLHL30-AS1Q8NEE0 82 aa11.23□□□□□ -0.61
CDH3-201ENST00000264012 MRPS16Q9Y3D3 137 aaKnown RBP11.23□□□□□ -0.61
CDH3-201ENST00000264012 A8MWP6 167 aa11.23□□□□□ -0.61
CDH3-201ENST00000264012 KLF2Q9Y5W3 355 aaPredicted RBP11.23□□□□□ -0.61
CDH3-201ENST00000264012 C2orf16Q68DN1 1984 aa11.23□□□□□ -0.61
CDH3-201ENST00000264012 ZNF726P1Q15940 193 aa11.23□□□□□ -0.61
CDH3-201ENST00000264012 GTSCR1Q86UQ5 136 aa11.23□□□□□ -0.61
CDH3-201ENST00000264012 DKK4Q9UBT3 224 aa11.23□□□□□ -0.61
CDH3-201ENST00000264012 A0A1W2PNU3 283 aaPredicted RBP11.23□□□□□ -0.61
CDH3-201ENST00000264012 RNASE1P07998 156 aaKnown RBP11.22□□□□□ -0.61
CDH3-201ENST00000264012 IL15RAQ13261 267 aa11.22□□□□□ -0.61
CDH3-201ENST00000264012 HAPLN4Q86UW8 402 aa11.22□□□□□ -0.61
CDH3-201ENST00000264012 A0A1B0GV72 72 aa11.22□□□□□ -0.61
CDH3-201ENST00000264012 CMC4P56277 68 aaPredicted RBP11.22□□□□□ -0.61
CDH3-201ENST00000264012 SYNJ2BPP57105 145 aa11.22□□□□□ -0.61
CDH3-201ENST00000264012 LAGE3Q14657 143 aa11.22□□□□□ -0.61
CDH3-201ENST00000264012 Q5PR19 223 aa11.22□□□□□ -0.61
CDH3-201ENST00000264012 C5orf30Q96GV9 206 aa11.22□□□□□ -0.61
CDH3-201ENST00000264012 IGKV3D-20A0A0C4DH25 116 aa11.21□□□□□ -0.61
CDH3-201ENST00000264012 SHISA9B4DS77 424 aa11.21□□□□□ -0.61
CDH3-201ENST00000264012 GRNP28799 593 aaKnown RBP11.21□□□□□ -0.61
CDH3-201ENST00000264012 RCHY1Q96PM5 261 aa11.21□□□□□ -0.61
CDH3-201ENST00000264012 SPRY4Q9C004 299 aa11.21□□□□□ -0.61
CDH3-201ENST00000264012 CD28P10747 220 aa11.21□□□□□ -0.61
CDH3-201ENST00000264012 CHTOPQ9Y3Y2 248 aaKnown RBP11.21□□□□□ -0.61
CDH3-201ENST00000264012 IGKCP01834 107 aa11.21□□□□□ -0.61
CDH3-201ENST00000264012 ERCC8Q13216 396 aa11.21□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 39.5 ms