RNA–Protein interactions for RNA: ENST00000254950.12

VPS4A-201, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS4A, Length 4,100 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-201ENST00000254950 PLA2G2EQ9NZK7 142 aa9.1□□□□□ -0.95
VPS4A-201ENST00000254950 C20orf202A1L168 122 aa9.1□□□□□ -0.95
VPS4A-201ENST00000254950 VWC2LB2RUY7 222 aa9.1□□□□□ -0.95
VPS4A-201ENST00000254950 H3BRN7 92 aa9.1□□□□□ -0.95
VPS4A-201ENST00000254950 HLA-DQA1P01909 254 aa9.1□□□□□ -0.95
VPS4A-201ENST00000254950 NSUN5P1Q3KNT7 163 aa9.1□□□□□ -0.95
VPS4A-201ENST00000254950 F5H697 171 aa9.1□□□□□ -0.95
VPS4A-201ENST00000254950 ZNF253O75346 499 aa9.1□□□□□ -0.95
VPS4A-201ENST00000254950 FCN3O75636 299 aa9.1□□□□□ -0.95
VPS4A-201ENST00000254950 LINC01551Q86U37 167 aa9.1□□□□□ -0.95
VPS4A-201ENST00000254950 ZNF502Q8TBZ5 544 aa9.1□□□□□ -0.95
VPS4A-201ENST00000254950 OVOL1O14753 267 aa9.09□□□□□ -0.95
VPS4A-201ENST00000254950 APCSP02743 223 aa9.09□□□□□ -0.95
VPS4A-201ENST00000254950 SNRPEP62304 92 aaKnown RBP9.09□□□□□ -0.95
VPS4A-201ENST00000254950 RPP21Q9H633 154 aaKnown RBP9.09□□□□□ -0.95
VPS4A-201ENST00000254950 ZNF586Q9NXT0 402 aa9.09□□□□□ -0.95
VPS4A-201ENST00000254950 TMEM14CQ9P0S9 112 aa9.09□□□□□ -0.95
VPS4A-201ENST00000254950 M0R3E3 92 aa9.09□□□□□ -0.95
VPS4A-201ENST00000254950 TRGC2P03986 189 aa9.09□□□□□ -0.95
VPS4A-201ENST00000254950 RNASE7Q9H1E1 156 aaKnown RBP9.09□□□□□ -0.95
VPS4A-201ENST00000254950 RAI1Q7Z5J4 1906 aaPredicted RBP9.09□□□□□ -0.95
VPS4A-201ENST00000254950 IGKV1OR2-108A0A075B7D4 117 aa9.09□□□□□ -0.95
VPS4A-201ENST00000254950 SCGB1D1O95968 90 aa9.09□□□□□ -0.95
VPS4A-201ENST00000254950 ADCYAP1P18509 176 aa9.09□□□□□ -0.95
VPS4A-201ENST00000254950 PMS2P11Q13670 270 aa9.09□□□□□ -0.95
VPS4A-201ENST00000254950 FANCD2OSQ96PS1 177 aa9.09□□□□□ -0.95
VPS4A-201ENST00000254950 MRPL36Q9P0J6 103 aaKnown RBP9.09□□□□□ -0.95
VPS4A-201ENST00000254950 ABCA2Q9BZC7 2435 aa9.09□□□□□ -0.95
VPS4A-201ENST00000254950 OR4C46A6NHA9 309 aa9.08□□□□□ -0.96
VPS4A-201ENST00000254950 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa9.08□□□□□ -0.96
VPS4A-201ENST00000254950 PRSS3P2Q8NHM4 247 aa9.08□□□□□ -0.96
VPS4A-201ENST00000254950 ASCL2Q99929 193 aa9.08□□□□□ -0.96
VPS4A-201ENST00000254950 FOXC2Q99958 501 aa9.08□□□□□ -0.96
VPS4A-201ENST00000254950 LY96Q9Y6Y9 160 aa9.08□□□□□ -0.96
VPS4A-201ENST00000254950 TRBV19A0A075B6N1 114 aa9.08□□□□□ -0.96
VPS4A-201ENST00000254950 FABP5P3A8MUU1 101 aa9.08□□□□□ -0.96
VPS4A-201ENST00000254950 MBD6Q96DN6 1003 aa9.08□□□□□ -0.96
VPS4A-201ENST00000254950 IGKV2-40A0A087WW87 121 aaPredicted RBP9.08□□□□□ -0.96
VPS4A-201ENST00000254950 HSBP1L1C9JCN9 74 aa9.08□□□□□ -0.96
VPS4A-201ENST00000254950 DUSP14O95147 198 aaKnown RBP9.08□□□□□ -0.96
VPS4A-201ENST00000254950 IGKV2D-40P01614 121 aaPredicted RBP9.08□□□□□ -0.96
VPS4A-201ENST00000254950 FAM159AQ6UWV7 190 aa9.08□□□□□ -0.96
VPS4A-201ENST00000254950 ZFHX4Q86UP3 3567 aa9.08□□□□□ -0.96
VPS4A-201ENST00000254950 RAB4AP20338 218 aa9.07□□□□□ -0.96
VPS4A-201ENST00000254950 LCN12Q6JVE5 192 aa9.07□□□□□ -0.96
VPS4A-201ENST00000254950 TCF21O43680 179 aa9.07□□□□□ -0.96
VPS4A-201ENST00000254950 CTSGP08311 255 aa9.07□□□□□ -0.96
VPS4A-201ENST00000254950 TWIST1Q15672 202 aa9.07□□□□□ -0.96
VPS4A-201ENST00000254950 TMEM183BQ1AE95 376 aa9.07□□□□□ -0.96
VPS4A-201ENST00000254950 RNASEKQ6P5S7 137 aaKnown RBP9.07□□□□□ -0.96
VPS4A-201ENST00000254950 SELENOKQ9Y6D0 94 aa9.07□□□□□ -0.96
VPS4A-201ENST00000254950 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP9.07□□□□□ -0.96
VPS4A-201ENST00000254950 GGTLC3B5MD39 225 aa9.07□□□□□ -0.96
VPS4A-201ENST00000254950 PLP1P60201 277 aa9.07□□□□□ -0.96
VPS4A-201ENST00000254950 FOXE3Q13461 319 aa9.07□□□□□ -0.96
VPS4A-201ENST00000254950 OR1N2Q8NGR9 330 aa9.07□□□□□ -0.96
VPS4A-201ENST00000254950 NRN1Q9NPD7 142 aa9.07□□□□□ -0.96
VPS4A-201ENST00000254950 TRAV9-1A0A075B6T8 112 aa9.07□□□□□ -0.96
VPS4A-201ENST00000254950 ZNF688P0C7X2 276 aa9.07□□□□□ -0.96
VPS4A-201ENST00000254950 PSMG4Q5JS54 123 aa9.07□□□□□ -0.96
VPS4A-201ENST00000254950 Q8N6K4 173 aa9.07□□□□□ -0.96
VPS4A-201ENST00000254950 FXYD5Q96DB9 178 aa9.07□□□□□ -0.96
VPS4A-201ENST00000254950 TMEM242Q9NWH2 141 aa9.07□□□□□ -0.96
VPS4A-201ENST00000254950 RNF114Q9Y508 228 aa9.07□□□□□ -0.96
VPS4A-201ENST00000254950 PHLDA3Q9Y5J5 127 aa9.07□□□□□ -0.96
VPS4A-201ENST00000254950 TRAV8-1A0A0A6YYK1 113 aa9.06□□□□□ -0.96
VPS4A-201ENST00000254950 LINC01619G3V211 115 aa9.06□□□□□ -0.96
VPS4A-201ENST00000254950 PMCHP20382 165 aa9.06□□□□□ -0.96
VPS4A-201ENST00000254950 NUTF2P61970 127 aaKnown RBP9.06□□□□□ -0.96
VPS4A-201ENST00000254950 TMEM86BQ8N661 226 aa9.06□□□□□ -0.96
VPS4A-201ENST00000254950 GLMPQ8WWB7 406 aa9.06□□□□□ -0.96
VPS4A-201ENST00000254950 TRBV9A0A0B4J1U6 114 aa9.06□□□□□ -0.96
VPS4A-201ENST00000254950 Q6AWC8 147 aa9.06□□□□□ -0.96
VPS4A-201ENST00000254950 IGFL4Q6B9Z1 124 aa9.06□□□□□ -0.96
VPS4A-201ENST00000254950 DMXL2Q8TDJ6 3036 aa9.06□□□□□ -0.96
VPS4A-201ENST00000254950 TANC2Q9HCD6 1990 aa9.06□□□□□ -0.96
VPS4A-201ENST00000254950 PRSS46E5RG02 174 aa9.06□□□□□ -0.96
VPS4A-201ENST00000254950 RPLP1P05386 114 aaKnown RBP9.06□□□□□ -0.96
VPS4A-201ENST00000254950 CSN3P07498 182 aa9.06□□□□□ -0.96
VPS4A-201ENST00000254950 PRB4P10163 310 aaPredicted RBP9.06□□□□□ -0.96
VPS4A-201ENST00000254950 PATE2Q6UY27 113 aa9.06□□□□□ -0.96
VPS4A-201ENST00000254950 ATP6V0BQ99437 205 aa9.06□□□□□ -0.96
VPS4A-201ENST00000254950 MRPL18Q9H0U6 180 aaKnown RBP9.06□□□□□ -0.96
VPS4A-201ENST00000254950 LOC105371267A0A1B0GV96 52 aa9.05□□□□□ -0.96
VPS4A-201ENST00000254950 PSG3Q16557 428 aa9.05□□□□□ -0.96
VPS4A-201ENST00000254950 LINC00479Q96M42 142 aa9.05□□□□□ -0.96
VPS4A-201ENST00000254950 SOX21Q9Y651 276 aaPredicted RBP9.05□□□□□ -0.96
VPS4A-201ENST00000254950 CD5LO43866 347 aa9.05□□□□□ -0.96
VPS4A-201ENST00000254950 ZNF138P52744 262 aa9.05□□□□□ -0.96
VPS4A-201ENST00000254950 ZNF48Q96MX3 618 aaPredicted RBP9.05□□□□□ -0.96
VPS4A-201ENST00000254950 A0A1B0GUT8 65 aa9.05□□□□□ -0.96
VPS4A-201ENST00000254950 LGALS1P09382 135 aaKnown RBP9.05□□□□□ -0.96
VPS4A-201ENST00000254950 HBBP68871 147 aa9.05□□□□□ -0.96
VPS4A-201ENST00000254950 Q6YL49 198 aa9.05□□□□□ -0.96
VPS4A-201ENST00000254950 OR11H1Q8NG94 326 aa9.05□□□□□ -0.96
VPS4A-201ENST00000254950 LINC01548A6NM66 108 aa9.04□□□□□ -0.96
VPS4A-201ENST00000254950 SAP30O75446 220 aa9.04□□□□□ -0.96
VPS4A-201ENST00000254950 FABP4P15090 132 aa9.04□□□□□ -0.96
VPS4A-201ENST00000254950 CD33P20138 364 aa9.04□□□□□ -0.96
VPS4A-201ENST00000254950 CBLN1P23435 193 aa9.04□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 34.9 ms