RNA–Protein interactions for RNA: ENST00000254351.8

SDC1-201, Transcript of syndecan 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC1, Length 3,147 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-201ENST00000254351 TNFAIP6P98066 277 aaPredicted RBP11.44□□□□□ -0.58
SDC1-201ENST00000254351 ETDBQ3ZM63 59 aa11.44□□□□□ -0.58
SDC1-201ENST00000254351 LYZL1Q6UWQ5 148 aa11.44□□□□□ -0.58
SDC1-201ENST00000254351 SLC25A48Q6ZT89 311 aaKnown RBP11.44□□□□□ -0.58
SDC1-201ENST00000254351 GTSCR1Q86UQ5 136 aa11.44□□□□□ -0.58
SDC1-201ENST00000254351 ARPC1AQ92747 370 aa11.44□□□□□ -0.58
SDC1-201ENST00000254351 NBASA2RRP1 2371 aa11.43□□□□□ -0.58
SDC1-201ENST00000254351 NEGR1Q7Z3B1 354 aa11.43□□□□□ -0.58
SDC1-201ENST00000254351 KLF12Q9Y4X4 402 aa11.43□□□□□ -0.58
SDC1-201ENST00000254351 H3BMG7 143 aa11.43□□□□□ -0.58
SDC1-201ENST00000254351 PRSS1P07477 247 aa11.43□□□□□ -0.58
SDC1-201ENST00000254351 GP9P14770 177 aa11.43□□□□□ -0.58
SDC1-201ENST00000254351 HSD52Q0P140 79 aa11.43□□□□□ -0.58
SDC1-201ENST00000254351 RIGQ13278 110 aa11.43□□□□□ -0.58
SDC1-201ENST00000254351 GAFA1Q96PS6 74 aa11.43□□□□□ -0.58
SDC1-201ENST00000254351 ZNF785A8K8V0 405 aa11.42□□□□□ -0.58
SDC1-201ENST00000254351 HAX1O00165 279 aa11.42□□□□□ -0.58
SDC1-201ENST00000254351 SMIM13P0DJ93 91 aa11.42□□□□□ -0.58
SDC1-201ENST00000254351 ATP5G2Q06055 141 aa11.42□□□□□ -0.58
SDC1-201ENST00000254351 TMEM164Q5U3C3 297 aa11.42□□□□□ -0.58
SDC1-201ENST00000254351 BOD1L2Q8IYS8 172 aa11.42□□□□□ -0.58
SDC1-201ENST00000254351 MDS2Q8NDY4 140 aa11.42□□□□□ -0.58
SDC1-201ENST00000254351 PIP4P1Q86T03 277 aa11.42□□□□□ -0.58
SDC1-201ENST00000254351 RNF7Q9UBF6 113 aa11.42□□□□□ -0.58
SDC1-201ENST00000254351 CHTOPQ9Y3Y2 248 aaKnown RBP11.42□□□□□ -0.58
SDC1-201ENST00000254351 CRIP1P50238 77 aa11.42□□□□□ -0.58
SDC1-201ENST00000254351 INSL3P51460 131 aa11.42□□□□□ -0.58
SDC1-201ENST00000254351 POU2AF1Q16633 256 aa11.42□□□□□ -0.58
SDC1-201ENST00000254351 RPRMLQ8N4K4 120 aa11.42□□□□□ -0.58
SDC1-201ENST00000254351 TMEM75Q8N9X5 138 aa11.42□□□□□ -0.58
SDC1-201ENST00000254351 IFI27L1Q96BM0 104 aa11.42□□□□□ -0.58
SDC1-201ENST00000254351 HIGD1AQ9Y241 93 aa11.42□□□□□ -0.58
SDC1-201ENST00000254351 AGRNO00468 2067 aa11.41□□□□□ -0.58
SDC1-201ENST00000254351 CKS2P33552 79 aa11.41□□□□□ -0.58
SDC1-201ENST00000254351 TWIST1Q15672 202 aa11.41□□□□□ -0.58
SDC1-201ENST00000254351 ZNF436-AS1Q8NC38 126 aaPredicted RBP11.41□□□□□ -0.58
SDC1-201ENST00000254351 ABHD17AQ96GS6 310 aa11.41□□□□□ -0.58
SDC1-201ENST00000254351 IGLV2-11P01706 119 aa11.41□□□□□ -0.58
SDC1-201ENST00000254351 OR4C13Q8NGP0 309 aa11.41□□□□□ -0.58
SDC1-201ENST00000254351 OSR1Q8TAX0 266 aaPredicted RBP11.41□□□□□ -0.58
SDC1-201ENST00000254351 SIGMAR1Q99720 223 aa11.41□□□□□ -0.58
SDC1-201ENST00000254351 TMEM133Q9H2Q1 129 aa11.41□□□□□ -0.58
SDC1-201ENST00000254351 MSRB1Q9NZV6 116 aa11.41□□□□□ -0.58
SDC1-201ENST00000254351 NPYP01303 97 aa11.4□□□□□ -0.58
SDC1-201ENST00000254351 STXBP6Q8NFX7 210 aa11.4□□□□□ -0.58
SDC1-201ENST00000254351 Q8TAT8 98 aa11.4□□□□□ -0.58
SDC1-201ENST00000254351 CCL17Q92583 94 aa11.4□□□□□ -0.58
SDC1-201ENST00000254351 MALRD1Q5VYJ5 2156 aa11.4□□□□□ -0.58
SDC1-201ENST00000254351 ABCA4P78363 2273 aa11.4□□□□□ -0.58
SDC1-201ENST00000254351 IGHV3-35A0A0C4DH35 117 aa11.4□□□□□ -0.58
SDC1-201ENST00000254351 CR1LQ2VPA4 569 aa11.4□□□□□ -0.58
SDC1-201ENST00000254351 MBNL2Q5VZF2 373 aaKnown RBP11.4□□□□□ -0.58
SDC1-201ENST00000254351 C22orf34Q6ZV56 151 aa11.4□□□□□ -0.58
SDC1-201ENST00000254351 NCOR1P1Q9H4R4 102 aa11.4□□□□□ -0.58
SDC1-201ENST00000254351 SOX21Q9Y651 276 aaPredicted RBP11.4□□□□□ -0.58
SDC1-201ENST00000254351 SPTBN1Q01082 2364 aaKnown RBP11.4□□□□□ -0.59
SDC1-201ENST00000254351 SLC25A39Q9BZJ4 359 aaPredicted RBP11.4□□□□□ -0.59
SDC1-201ENST00000254351 PRSS47A8MTI9 375 aa11.39□□□□□ -0.59
SDC1-201ENST00000254351 GATA1P15976 413 aaPredicted RBP11.39□□□□□ -0.59
SDC1-201ENST00000254351 KLF17Q5JT82 389 aaPredicted RBP11.39□□□□□ -0.59
SDC1-201ENST00000254351 FAM169BQ8N8A8 192 aa11.39□□□□□ -0.59
SDC1-201ENST00000254351 TMEM160Q9NX00 188 aa11.39□□□□□ -0.59
SDC1-201ENST00000254351 PSG8Q9UQ74 426 aa11.39□□□□□ -0.59
SDC1-201ENST00000254351 MZT1Q08AG7 82 aa11.39□□□□□ -0.59
SDC1-201ENST00000254351 MUC6Q6W4X9 2439 aa11.38□□□□□ -0.59
SDC1-201ENST00000254351 NPIPB6E9PJ23 425 aa11.38□□□□□ -0.59
SDC1-201ENST00000254351 NDUFS7O75251 213 aa11.38□□□□□ -0.59
SDC1-201ENST00000254351 APOBEC3AP31941 199 aaPredicted RBP11.38□□□□□ -0.59
SDC1-201ENST00000254351 ZNF492Q9P255 531 aa11.38□□□□□ -0.59
SDC1-201ENST00000254351 GAGE12HA6NDE8 117 aa11.38□□□□□ -0.59
SDC1-201ENST00000254351 HBDP02042 147 aa11.38□□□□□ -0.59
SDC1-201ENST00000254351 CT45A10P0DMU9 189 aa11.38□□□□□ -0.59
SDC1-201ENST00000254351 CEACAM3P40198 252 aa11.38□□□□□ -0.59
SDC1-201ENST00000254351 PLGLAQ15195 96 aa11.38□□□□□ -0.59
SDC1-201ENST00000254351 MRPL51Q4U2R6 128 aaKnown RBP11.38□□□□□ -0.59
SDC1-201ENST00000254351 CT83Q5H943 113 aa11.38□□□□□ -0.59
SDC1-201ENST00000254351 C8orf46Q8TAG6 207 aa11.38□□□□□ -0.59
SDC1-201ENST00000254351 GFRA4Q9GZZ7 299 aa11.38□□□□□ -0.59
SDC1-201ENST00000254351 PROCRQ9UNN8 238 aa11.38□□□□□ -0.59
SDC1-201ENST00000254351 NPIPB5A8MRT5 1133 aa11.38□□□□□ -0.59
SDC1-201ENST00000254351 LHBP01229 141 aa11.38□□□□□ -0.59
SDC1-201ENST00000254351 IGHV1-46P01743 117 aa11.38□□□□□ -0.59
SDC1-201ENST00000254351 ORMDL3Q8N138 153 aa11.38□□□□□ -0.59
SDC1-201ENST00000254351 DEFB124Q8NES8 71 aa11.38□□□□□ -0.59
SDC1-201ENST00000254351 RAI1Q7Z5J4 1906 aaPredicted RBP11.37□□□□□ -0.59
SDC1-201ENST00000254351 IGKV2-40A0A087WW87 121 aaPredicted RBP11.37□□□□□ -0.59
SDC1-201ENST00000254351 IGKV2D-40P01614 121 aaPredicted RBP11.37□□□□□ -0.59
SDC1-201ENST00000254351 RAB9AP51151 201 aa11.37□□□□□ -0.59
SDC1-201ENST00000254351 TMEM200BQ69YZ2 307 aa11.37□□□□□ -0.59
SDC1-201ENST00000254351 TMEM178AQ8NBL3 297 aa11.37□□□□□ -0.59
SDC1-201ENST00000254351 DEFB104AQ8WTQ1 72 aa11.37□□□□□ -0.59
SDC1-201ENST00000254351 TNFRSF14Q92956 283 aa11.37□□□□□ -0.59
SDC1-201ENST00000254351 CHAC1Q9BUX1 264 aa11.37□□□□□ -0.59
SDC1-201ENST00000254351 IGHV3-23P01764 117 aa11.37□□□□□ -0.59
SDC1-201ENST00000254351 LEPP41159 167 aa11.37□□□□□ -0.59
SDC1-201ENST00000254351 C16orf54Q6UWD8 224 aa11.37□□□□□ -0.59
SDC1-201ENST00000254351 LYPD2Q6UXB3 125 aa11.37□□□□□ -0.59
SDC1-201ENST00000254351 OR5A1Q8NGJ0 315 aa11.37□□□□□ -0.59
SDC1-201ENST00000254351 RASL11BQ9BPW5 248 aa11.37□□□□□ -0.59
SDC1-201ENST00000254351 CUL9Q8IWT3 2517 aa11.36□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 127.5 ms