RNA–Protein interactions for RNA: ENST00000637871.1

CLN3-263, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,606 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-263ENST00000637871 IGHV7-81A0A0B4J1V7 117 aa14.43□□□□□ -0.1
CLN3-263ENST00000637871 CD5LO43866 347 aa14.43□□□□□ -0.1
CLN3-263ENST00000637871 SLC25A5P05141 298 aaKnown RBP14.43□□□□□ -0.1
CLN3-263ENST00000637871 C19orf35Q6ZS72 473 aa14.43□□□□□ -0.1
CLN3-263ENST00000637871 BAGE2Q86Y30 109 aa14.43□□□□□ -0.1
CLN3-263ENST00000637871 FAM110DQ8TAY7 271 aaPredicted RBP14.43□□□□□ -0.1
CLN3-263ENST00000637871 ATG101Q9BSB4 218 aa14.43□□□□□ -0.1
CLN3-263ENST00000637871 C21orf62Q9NYP8 219 aa14.43□□□□□ -0.1
CLN3-263ENST00000637871 TRAV20A0A0B4J274 112 aa14.42□□□□□ -0.1
CLN3-263ENST00000637871 PGPA6NDG6 321 aa14.42□□□□□ -0.1
CLN3-263ENST00000637871 IGLV2-8P01709 118 aa14.42□□□□□ -0.1
CLN3-263ENST00000637871 UBE2G1P62253 170 aa14.42□□□□□ -0.1
CLN3-263ENST00000637871 RANP62826 216 aaKnown RBP14.42□□□□□ -0.1
CLN3-263ENST00000637871 S100A12P80511 92 aa14.42□□□□□ -0.1
CLN3-263ENST00000637871 ZNF600Q6ZNG1 722 aa14.42□□□□□ -0.1
CLN3-263ENST00000637871 OR4F17Q8NGA8 305 aa14.42□□□□□ -0.1
CLN3-263ENST00000637871 RNF125Q96EQ8 232 aa14.42□□□□□ -0.1
CLN3-263ENST00000637871 FMC1Q96HJ9 113 aa14.42□□□□□ -0.1
CLN3-263ENST00000637871 YAE1D1Q9NRH1 226 aa14.42□□□□□ -0.1
CLN3-263ENST00000637871 TRAPPC1Q9Y5R8 145 aa14.42□□□□□ -0.1
CLN3-263ENST00000637871 NAV3Q8IVL0 2385 aa14.41□□□□□ -0.1
CLN3-263ENST00000637871 CENPVL3A0A0U1RRI6 287 aa14.41□□□□□ -0.1
CLN3-263ENST00000637871 H3BRN7 92 aa14.41□□□□□ -0.1
CLN3-263ENST00000637871 FOSL1P15407 271 aa14.41□□□□□ -0.1
CLN3-263ENST00000637871 RPL15P61313 204 aaKnown RBP14.41□□□□□ -0.1
CLN3-263ENST00000637871 IBA57Q5T440 356 aaKnown RBP14.41□□□□□ -0.1
CLN3-263ENST00000637871 IL17RELQ6ZVW7 336 aa14.41□□□□□ -0.1
CLN3-263ENST00000637871 ZNF491Q8N8L2 437 aa14.41□□□□□ -0.1
CLN3-263ENST00000637871 ATP6V0BQ99437 205 aa14.41□□□□□ -0.1
CLN3-263ENST00000637871 FAM103A1Q9BTL3 118 aaKnown RBP14.41□□□□□ -0.1
CLN3-263ENST00000637871 IGHV1-69DA0A0B4J2H0 117 aa14.41□□□□□ -0.1
CLN3-263ENST00000637871 TRBV6-1A0A0K0K1D8 114 aa14.41□□□□□ -0.1
CLN3-263ENST00000637871 PLXNB1O43157 2135 aa14.41□□□□□ -0.1
CLN3-263ENST00000637871 AVPP01185 164 aa14.41□□□□□ -0.1
CLN3-263ENST00000637871 IGHV1-69P01742 117 aa14.41□□□□□ -0.1
CLN3-263ENST00000637871 MT-ND6P03923 174 aa14.41□□□□□ -0.1
CLN3-263ENST00000637871 TMEM183AQ8IXX5 376 aa14.41□□□□□ -0.1
CLN3-263ENST00000637871 HIST3H2BBQ8N257 126 aa14.41□□□□□ -0.1
CLN3-263ENST00000637871 ARL6IP6Q8N6S5 226 aa14.41□□□□□ -0.1
CLN3-263ENST00000637871 GPR82Q96P67 336 aa14.41□□□□□ -0.1
CLN3-263ENST00000637871 MEGF9Q9H1U4 602 aa14.41□□□□□ -0.1
CLN3-263ENST00000637871 EGR2P11161 476 aaPredicted RBP14.4□□□□□ -0.1
CLN3-263ENST00000637871 HNF1AP20823 631 aa14.4□□□□□ -0.1
CLN3-263ENST00000637871 WDR73Q6P4I2 378 aa14.4□□□□□ -0.1
CLN3-263ENST00000637871 BLNKQ8WV28 456 aa14.4□□□□□ -0.1
CLN3-263ENST00000637871 Q9H3A6 140 aa14.4□□□□□ -0.1
CLN3-263ENST00000637871 MGST1P10620 155 aaKnown RBP14.39□□□□□ -0.11
CLN3-263ENST00000637871 GATA3P23771 443 aa14.39□□□□□ -0.11
CLN3-263ENST00000637871 NDPQ00604 133 aa14.39□□□□□ -0.11
CLN3-263ENST00000637871 PDE6HQ13956 83 aa14.39□□□□□ -0.11
CLN3-263ENST00000637871 Q56UQ5 140 aa14.39□□□□□ -0.11
CLN3-263ENST00000637871 DNLZQ5SXM8 178 aa14.39□□□□□ -0.11
CLN3-263ENST00000637871 RASL11AQ6T310 242 aa14.39□□□□□ -0.11
CLN3-263ENST00000637871 C7orf69Q9H7B7 122 aa14.39□□□□□ -0.11
CLN3-263ENST00000637871 MTORP42345 2549 aa14.39□□□□□ -0.11
CLN3-263ENST00000637871 NSD1Q96L73 2696 aaPredicted RBP14.38□□□□□ -0.11
CLN3-263ENST00000637871 OR5I1Q13606 314 aa14.38□□□□□ -0.11
CLN3-263ENST00000637871 CMTM2Q8TAZ6 248 aa14.38□□□□□ -0.11
CLN3-263ENST00000637871 GNB1LQ9BYB4 327 aa14.38□□□□□ -0.11
CLN3-263ENST00000637871 SMIM27A0A1W2PRY6 76 aa14.37□□□□□ -0.11
CLN3-263ENST00000637871 TCRAP04437 139 aa14.37□□□□□ -0.11
CLN3-263ENST00000637871 IL4P05112 153 aa14.37□□□□□ -0.11
CLN3-263ENST00000637871 RAB9AP51151 201 aa14.37□□□□□ -0.11
CLN3-263ENST00000637871 FBXL7Q9UJT9 491 aa14.37□□□□□ -0.11
CLN3-263ENST00000637871 ZFHX3Q15911 3703 aa14.37□□□□□ -0.11
CLN3-263ENST00000637871 IGHV3OR16-10A0A075B7F0 116 aa14.37□□□□□ -0.11
CLN3-263ENST00000637871 SERTM2A0A1B0GWG4 89 aa14.37□□□□□ -0.11
CLN3-263ENST00000637871 XKRY2A2RUG3 117 aa14.37□□□□□ -0.11
CLN3-263ENST00000637871 K7EQM0 130 aa14.37□□□□□ -0.11
CLN3-263ENST00000637871 SLC17A3O00476 420 aa14.37□□□□□ -0.11
CLN3-263ENST00000637871 GATCO43716 136 aaKnown RBP14.37□□□□□ -0.11
CLN3-263ENST00000637871 NDUFB8O95169 186 aa14.37□□□□□ -0.11
CLN3-263ENST00000637871 CRIP2P52943 208 aaPredicted RBP14.37□□□□□ -0.11
CLN3-263ENST00000637871 FAM120AOSQ5T036 256 aa14.37□□□□□ -0.11
CLN3-263ENST00000637871 UNQ5815/PRO19632Q6UWF5 114 aa14.37□□□□□ -0.11
CLN3-263ENST00000637871 PIP4P2Q8N4L2 257 aa14.37□□□□□ -0.11
CLN3-263ENST00000637871 GRAMD2BQ96HH9 432 aa14.37□□□□□ -0.11
CLN3-263ENST00000637871 ZNF492Q9P255 531 aa14.37□□□□□ -0.11
CLN3-263ENST00000637871 MOB4Q9Y3A3 225 aa14.37□□□□□ -0.11
CLN3-263ENST00000637871 TRBV19A0A075B6N1 114 aa14.36□□□□□ -0.11
CLN3-263ENST00000637871 ZNF705GA8MUZ8 300 aaPredicted RBP14.36□□□□□ -0.11
CLN3-263ENST00000637871 ZNF586Q9NXT0 402 aa14.36□□□□□ -0.11
CLN3-263ENST00000637871 HIVEP2P31629 2446 aa14.35□□□□□ -0.11
CLN3-263ENST00000637871 FBLL1A6NHQ2 334 aaKnown RBP14.35□□□□□ -0.11
CLN3-263ENST00000637871 INAFM1C9JVW0 142 aa14.35□□□□□ -0.11
CLN3-263ENST00000637871 IGLC2P0DOY2 106 aa14.35□□□□□ -0.11
CLN3-263ENST00000637871 FBLN7Q53RD9 439 aa14.35□□□□□ -0.11
CLN3-263ENST00000637871 CT83Q5H943 113 aa14.35□□□□□ -0.11
CLN3-263ENST00000637871 KLF17Q5JT82 389 aaPredicted RBP14.35□□□□□ -0.11
CLN3-263ENST00000637871 C5orf56Q8N8D9 126 aa14.35□□□□□ -0.11
CLN3-263ENST00000637871 MLST8Q9BVC4 326 aa14.35□□□□□ -0.11
CLN3-263ENST00000637871 IZUMO1RA6ND01 250 aa14.34□□□□□ -0.11
CLN3-263ENST00000637871 F8W735 103 aaPredicted RBP14.34□□□□□ -0.11
CLN3-263ENST00000637871 M0QZK8 103 aa14.34□□□□□ -0.11
CLN3-263ENST00000637871 OR2J3O76001 311 aa14.34□□□□□ -0.11
CLN3-263ENST00000637871 LTAP01374 205 aa14.34□□□□□ -0.11
CLN3-263ENST00000637871 RPL7P18124 248 aaKnown RBP14.34□□□□□ -0.11
CLN3-263ENST00000637871 RNASE7Q9H1E1 156 aaKnown RBP14.34□□□□□ -0.11
CLN3-263ENST00000637871 TRAV40A0A0B4J280 105 aa14.33□□□□□ -0.11
CLN3-263ENST00000637871 IFITM10A6NMD0 228 aa14.33□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 41.2 ms