RNA–Protein interactions for RNA: ENST00000636853.1

CLN3-251, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 2,289 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-251ENST00000636853 IGHV1-69DA0A0B4J2H0 117 aa12.27□□□□□ -0.45
CLN3-251ENST00000636853 IGHV1-69P01742 117 aa12.27□□□□□ -0.45
CLN3-251ENST00000636853 ESDP10768 282 aa12.27□□□□□ -0.45
CLN3-251ENST00000636853 TMEM219Q86XT9 240 aa12.27□□□□□ -0.45
CLN3-251ENST00000636853 ZNF586Q9NXT0 402 aa12.27□□□□□ -0.45
CLN3-251ENST00000636853 TRAV9-1A0A075B6T8 112 aa12.26□□□□□ -0.45
CLN3-251ENST00000636853 LINC01548A6NM66 108 aa12.26□□□□□ -0.45
CLN3-251ENST00000636853 ATP6V0E1O15342 81 aa12.26□□□□□ -0.45
CLN3-251ENST00000636853 LINC00614P0C842 121 aa12.26□□□□□ -0.45
CLN3-251ENST00000636853 PAFAH1B2P68402 229 aa12.26□□□□□ -0.45
CLN3-251ENST00000636853 UNQ5815/PRO19632Q6UWF5 114 aa12.26□□□□□ -0.45
CLN3-251ENST00000636853 Q9H3A6 140 aa12.26□□□□□ -0.45
CLN3-251ENST00000636853 THYN1Q9P016 225 aa12.26□□□□□ -0.45
CLN3-251ENST00000636853 TRAV30A0A087WSZ9 112 aa12.26□□□□□ -0.45
CLN3-251ENST00000636853 SCGB1D1O95968 90 aa12.26□□□□□ -0.45
CLN3-251ENST00000636853 YPEL3P61236 119 aaPredicted RBP12.26□□□□□ -0.45
CLN3-251ENST00000636853 SRSF1Q07955 248 aaKnown RBP eCLIP12.26□□□□□ -0.45
CLN3-251ENST00000636853 BAGE2Q86Y30 109 aa12.26□□□□□ -0.45
CLN3-251ENST00000636853 SHANK2-AS3Q9BTD1 123 aa12.26□□□□□ -0.45
CLN3-251ENST00000636853 FBXL7Q9UJT9 491 aa12.26□□□□□ -0.45
CLN3-251ENST00000636853 SOX21Q9Y651 276 aaPredicted RBP12.26□□□□□ -0.45
CLN3-251ENST00000636853 CELSR2Q9HCU4 2923 aa12.25□□□□□ -0.45
CLN3-251ENST00000636853 WI2-2373I1.2A0A1W2PRP0 233 aa12.25□□□□□ -0.45
CLN3-251ENST00000636853 A1L4Q6 167 aa12.25□□□□□ -0.45
CLN3-251ENST00000636853 OR2T8A6NH00 312 aa12.25□□□□□ -0.45
CLN3-251ENST00000636853 DLEU1O43261 78 aa12.25□□□□□ -0.45
CLN3-251ENST00000636853 RPLP1P05386 114 aaKnown RBP12.25□□□□□ -0.45
CLN3-251ENST00000636853 IGHV4-38-2P0DP08 117 aa12.25□□□□□ -0.45
CLN3-251ENST00000636853 FCGR2BP31994 310 aaPredicted RBP12.25□□□□□ -0.45
CLN3-251ENST00000636853 RPEL1Q2QD12 228 aa12.25□□□□□ -0.45
CLN3-251ENST00000636853 OSTCQ9NRP0 149 aa12.25□□□□□ -0.45
CLN3-251ENST00000636853 TMEM14CQ9P0S9 112 aa12.25□□□□□ -0.45
CLN3-251ENST00000636853 TRAPPC1Q9Y5R8 145 aa12.25□□□□□ -0.45
CLN3-251ENST00000636853 H3BRN7 92 aa12.25□□□□□ -0.45
CLN3-251ENST00000636853 HIST1H1EP10412 219 aaKnown RBP12.25□□□□□ -0.45
CLN3-251ENST00000636853 IBA57Q5T440 356 aaKnown RBP12.25□□□□□ -0.45
CLN3-251ENST00000636853 MS4A10Q96PG2 267 aa12.25□□□□□ -0.45
CLN3-251ENST00000636853 ATG101Q9BSB4 218 aa12.25□□□□□ -0.45
CLN3-251ENST00000636853 MAP1AP78559 2803 aaPredicted RBP12.24□□□□□ -0.45
CLN3-251ENST00000636853 G3V318 75 aa12.24□□□□□ -0.45
CLN3-251ENST00000636853 OR8I2Q8N0Y5 310 aa12.24□□□□□ -0.45
CLN3-251ENST00000636853 EXOC3-AS1Q8N2X6 119 aa12.24□□□□□ -0.45
CLN3-251ENST00000636853 C5orf56Q8N8D9 126 aa12.24□□□□□ -0.45
CLN3-251ENST00000636853 C17orf77Q96MU5 243 aa12.24□□□□□ -0.45
CLN3-251ENST00000636853 ZNF48Q96MX3 618 aaPredicted RBP12.24□□□□□ -0.45
CLN3-251ENST00000636853 SERTAD4Q9NUC0 356 aa12.24□□□□□ -0.45
CLN3-251ENST00000636853 ZNF25P17030 456 aaPredicted RBP12.23□□□□□ -0.45
CLN3-251ENST00000636853 UBE2G1P62253 170 aa12.23□□□□□ -0.45
CLN3-251ENST00000636853 TMEM183BQ1AE95 376 aa12.23□□□□□ -0.45
CLN3-251ENST00000636853 TEX43Q6ZNM6 134 aa12.23□□□□□ -0.45
CLN3-251ENST00000636853 C5orf17Q8NAS9 161 aa12.23□□□□□ -0.45
CLN3-251ENST00000636853 FAM110DQ8TAY7 271 aaPredicted RBP12.23□□□□□ -0.45
CLN3-251ENST00000636853 MIEN1Q9BRT3 115 aa12.23□□□□□ -0.45
CLN3-251ENST00000636853 CBY1Q9Y3M2 126 aa12.23□□□□□ -0.45
CLN3-251ENST00000636853 MSMBP08118 114 aa12.23□□□□□ -0.45
CLN3-251ENST00000636853 FRMD6-AS1P0C7T7 363 aa12.23□□□□□ -0.45
CLN3-251ENST00000636853 TCL1AP56279 114 aa12.23□□□□□ -0.45
CLN3-251ENST00000636853 PIFOQ8TCI5 191 aa12.23□□□□□ -0.45
CLN3-251ENST00000636853 C7orf69Q9H7B7 122 aa12.23□□□□□ -0.45
CLN3-251ENST00000636853 GOLT1BQ9Y3E0 138 aa12.23□□□□□ -0.45
CLN3-251ENST00000636853 SPINK4O60575 86 aa12.22□□□□□ -0.45
CLN3-251ENST00000636853 CA1P00915 261 aaPredicted RBP12.22□□□□□ -0.45
CLN3-251ENST00000636853 PRR27Q6MZM9 219 aa12.22□□□□□ -0.45
CLN3-251ENST00000636853 BPIFA4PQ86YQ2 179 aa12.22□□□□□ -0.45
CLN3-251ENST00000636853 TMEM208Q9BTX3 173 aa12.22□□□□□ -0.45
CLN3-251ENST00000636853 CHRDL1Q9BU40 450 aa12.22□□□□□ -0.45
CLN3-251ENST00000636853 FAM208BQ5VWN6 2430 aa12.22□□□□□ -0.45
CLN3-251ENST00000636853 TCRAP04437 139 aa12.22□□□□□ -0.45
CLN3-251ENST00000636853 CTSGP08311 255 aa12.22□□□□□ -0.45
CLN3-251ENST00000636853 PRB4P10163 310 aaPredicted RBP12.22□□□□□ -0.45
CLN3-251ENST00000636853 C15orf32Q32M92 178 aa12.22□□□□□ -0.45
CLN3-251ENST00000636853 OTORQ9NRC9 128 aa12.22□□□□□ -0.45
CLN3-251ENST00000636853 KLF12Q9Y4X4 402 aa12.22□□□□□ -0.45
CLN3-251ENST00000636853 IGHV3-35A0A0C4DH35 117 aa12.21□□□□□ -0.45
CLN3-251ENST00000636853 COX6B1P14854 86 aa12.21□□□□□ -0.45
CLN3-251ENST00000636853 CBLN1P23435 193 aa12.21□□□□□ -0.45
CLN3-251ENST00000636853 G0S2P27469 103 aa12.21□□□□□ -0.45
CLN3-251ENST00000636853 TPPP2P59282 170 aa12.21□□□□□ -0.45
CLN3-251ENST00000636853 SLC35B1P78383 322 aa12.21□□□□□ -0.45
CLN3-251ENST00000636853 RHOGP84095 191 aa12.21□□□□□ -0.45
CLN3-251ENST00000636853 OR4F17Q8NGA8 305 aa12.21□□□□□ -0.45
CLN3-251ENST00000636853 IGLC2P0DOY2 106 aa12.21□□□□□ -0.46
CLN3-251ENST00000636853 ADMP35318 185 aa12.21□□□□□ -0.46
CLN3-251ENST00000636853 CMTM2Q8TAZ6 248 aa12.21□□□□□ -0.46
CLN3-251ENST00000636853 TRBV19A0A075B6N1 114 aa12.2□□□□□ -0.46
CLN3-251ENST00000636853 IGHV3OR16-8A0A075B7F1 116 aa12.2□□□□□ -0.46
CLN3-251ENST00000636853 MRPS12O15235 138 aaKnown RBP12.2□□□□□ -0.46
CLN3-251ENST00000636853 AMY1AP04745 511 aa12.2□□□□□ -0.46
CLN3-251ENST00000636853 GPR183P32249 361 aa12.2□□□□□ -0.46
CLN3-251ENST00000636853 HIF1ANQ9NWT6 349 aa12.2□□□□□ -0.46
CLN3-251ENST00000636853 MOB4Q9Y3A3 225 aa12.2□□□□□ -0.46
CLN3-251ENST00000636853 TRAV8-1A0A0A6YYK1 113 aa12.2□□□□□ -0.46
CLN3-251ENST00000636853 LY6EQ16553 131 aa12.2□□□□□ -0.46
CLN3-251ENST00000636853 TMEM256Q8N2U0 113 aa12.2□□□□□ -0.46
CLN3-251ENST00000636853 NUDT10Q8NFP7 164 aa12.2□□□□□ -0.46
CLN3-251ENST00000636853 VN1R17PQ8TDU5 208 aa12.2□□□□□ -0.46
CLN3-251ENST00000636853 NUDT11Q96G61 164 aa12.2□□□□□ -0.46
CLN3-251ENST00000636853 MEGF9Q9H1U4 602 aa12.2□□□□□ -0.46
CLN3-251ENST00000636853 LINC00527Q9UJ94 153 aa12.2□□□□□ -0.46
CLN3-251ENST00000636853 FBN2P35556 2912 aa12.19□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 48.6 ms