RNA–Protein interactions for RNA: ENST00000622776.1

CPSF1-214, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 5

Gene CPSF1, Length 1,029 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-214ENST00000622776 GATA2P23769 480 aaPredicted RBP16.74■□□□□ 0.27
CPSF1-214ENST00000622776 TMEM128Q5BJH2 165 aa16.74■□□□□ 0.27
CPSF1-214ENST00000622776 IGFL4Q6B9Z1 124 aa16.74■□□□□ 0.27
CPSF1-214ENST00000622776 TMEM182Q6ZP80 229 aaPredicted RBP16.74■□□□□ 0.27
CPSF1-214ENST00000622776 TMED4Q7Z7H5 227 aa16.74■□□□□ 0.27
CPSF1-214ENST00000622776 GPR82Q96P67 336 aa16.74■□□□□ 0.27
CPSF1-214ENST00000622776 CIB3Q96Q77 187 aaPredicted RBP16.74■□□□□ 0.27
CPSF1-214ENST00000622776 SOSTQ9BQB4 213 aa16.74■□□□□ 0.27
CPSF1-214ENST00000622776 RPP30P78346 268 aaKnown RBP16.73■□□□□ 0.27
CPSF1-214ENST00000622776 LRTM2Q8N967 370 aa16.73■□□□□ 0.27
CPSF1-214ENST00000622776 TMEM147Q9BVK8 224 aa16.73■□□□□ 0.27
CPSF1-214ENST00000622776 TRAV8-2A0A0B4J237 113 aa16.72■□□□□ 0.27
CPSF1-214ENST00000622776 WRBO00258 174 aa16.72■□□□□ 0.27
CPSF1-214ENST00000622776 SYNGR2O43760 224 aa16.72■□□□□ 0.27
CPSF1-214ENST00000622776 DEFB130BP0DP73 79 aa16.72■□□□□ 0.27
CPSF1-214ENST00000622776 DEFB130AP0DP74 79 aa16.72■□□□□ 0.27
CPSF1-214ENST00000622776 TSPOP30536 169 aa16.72■□□□□ 0.27
CPSF1-214ENST00000622776 S100A7P31151 101 aa16.72■□□□□ 0.27
CPSF1-214ENST00000622776 B2MP61769 119 aa16.72■□□□□ 0.27
CPSF1-214ENST00000622776 FABP12A6NFH5 140 aa16.71■□□□□ 0.27
CPSF1-214ENST00000622776 VAMP1P23763 118 aa16.71■□□□□ 0.27
CPSF1-214ENST00000622776 TNFSF8P32971 234 aa16.71■□□□□ 0.27
CPSF1-214ENST00000622776 FAUP35544 74 aaKnown RBP16.71■□□□□ 0.27
CPSF1-214ENST00000622776 TNP2Q05952 138 aa16.71■□□□□ 0.27
CPSF1-214ENST00000622776 BAP18Q8IXM2 172 aa16.71■□□□□ 0.27
CPSF1-214ENST00000622776 RNF182Q8N6D2 247 aa16.71■□□□□ 0.27
CPSF1-214ENST00000622776 RAB2BQ8WUD1 216 aa16.71■□□□□ 0.27
CPSF1-214ENST00000622776 AKR1C1Q04828 323 aa16.7■□□□□ 0.26
CPSF1-214ENST00000622776 FGL1Q08830 312 aa16.7■□□□□ 0.26
CPSF1-214ENST00000622776 LRP1BQ9NZR2 4599 aa16.7■□□□□ 0.26
CPSF1-214ENST00000622776 NBDYA0A0U1RRE5 68 aa16.69■□□□□ 0.26
CPSF1-214ENST00000622776 F5H768 121 aa16.69■□□□□ 0.26
CPSF1-214ENST00000622776 AZU1P20160 251 aa16.69■□□□□ 0.26
CPSF1-214ENST00000622776 SPANXN5Q5MJ07 72 aa16.69■□□□□ 0.26
CPSF1-214ENST00000622776 ZNRF2Q8NHG8 242 aa16.69■□□□□ 0.26
CPSF1-214ENST00000622776 TRAV12-2A0A075B6T6 113 aa16.68■□□□□ 0.26
CPSF1-214ENST00000622776 PLAC8L1A1L4L8 177 aa16.68■□□□□ 0.26
CPSF1-214ENST00000622776 C16orf90A8MZG2 172 aa16.68■□□□□ 0.26
CPSF1-214ENST00000622776 H3BRN7 92 aa16.68■□□□□ 0.26
CPSF1-214ENST00000622776 NUDT3O95989 172 aa16.68■□□□□ 0.26
CPSF1-214ENST00000622776 FCN2Q15485 313 aa16.68■□□□□ 0.26
CPSF1-214ENST00000622776 ACOT7LQ6ZUV0 252 aa16.68■□□□□ 0.26
CPSF1-214ENST00000622776 ZNF738Q8NE65 137 aa16.68■□□□□ 0.26
CPSF1-214ENST00000622776 BCL7BQ9BQE9 202 aa16.68■□□□□ 0.26
CPSF1-214ENST00000622776 SLC25A39Q9BZJ4 359 aaPredicted RBP16.68■□□□□ 0.26
CPSF1-214ENST00000622776 SLIRPQ9GZT3 109 aaKnown RBP16.68■□□□□ 0.26
CPSF1-214ENST00000622776 H3BP45 60 aa16.67■□□□□ 0.26
CPSF1-214ENST00000622776 BOLA2-SMG1P6H3BVE0 249 aa16.67■□□□□ 0.26
CPSF1-214ENST00000622776 HOXB5P09067 269 aa16.67■□□□□ 0.26
CPSF1-214ENST00000622776 TMBIM6P55061 237 aa16.67■□□□□ 0.26
CPSF1-214ENST00000622776 TMEM144Q7Z5S9 345 aa16.67■□□□□ 0.26
CPSF1-214ENST00000622776 C6orf223Q8N319 242 aa16.67■□□□□ 0.26
CPSF1-214ENST00000622776 SHANK2-AS3Q9BTD1 123 aa16.67■□□□□ 0.26
CPSF1-214ENST00000622776 STRAPQ9Y3F4 350 aaKnown RBP16.67■□□□□ 0.26
CPSF1-214ENST00000622776 SFT2D2O95562 160 aa16.66■□□□□ 0.26
CPSF1-214ENST00000622776 ATP5G1P05496 136 aa16.66■□□□□ 0.26
CPSF1-214ENST00000622776 ATP5G3P48201 142 aa16.66■□□□□ 0.26
CPSF1-214ENST00000622776 AP3S2P59780 193 aa16.66■□□□□ 0.26
CPSF1-214ENST00000622776 TRIM63Q969Q1 353 aa16.66■□□□□ 0.26
CPSF1-214ENST00000622776 LINC01587Q99440 93 aa16.66■□□□□ 0.26
CPSF1-214ENST00000622776 CBY3A6NI87 242 aa16.65■□□□□ 0.26
CPSF1-214ENST00000622776 IL5P05113 134 aa16.65■□□□□ 0.26
CPSF1-214ENST00000622776 RPL7P18124 248 aaKnown RBP16.65■□□□□ 0.26
CPSF1-214ENST00000622776 CCL18P55774 89 aa16.65■□□□□ 0.26
CPSF1-214ENST00000622776 RAP2BP61225 183 aa16.65■□□□□ 0.26
CPSF1-214ENST00000622776 RHOBP62745 196 aa16.65■□□□□ 0.26
CPSF1-214ENST00000622776 HIST1H1AQ02539 215 aaPredicted RBP16.65■□□□□ 0.26
CPSF1-214ENST00000622776 PPP1R1AQ13522 171 aa16.65■□□□□ 0.26
CPSF1-214ENST00000622776 CYP2G1PQ6ZSU1 146 aa16.65■□□□□ 0.26
CPSF1-214ENST00000622776 TOMM5Q8N4H5 51 aa16.65■□□□□ 0.26
CPSF1-214ENST00000622776 SLC25A21Q9BQT8 299 aaPredicted RBP16.65■□□□□ 0.26
CPSF1-214ENST00000622776 HIGD1AQ9Y241 93 aa16.65■□□□□ 0.26
CPSF1-214ENST00000622776 SMCO3A2RU48 225 aa16.64■□□□□ 0.25
CPSF1-214ENST00000622776 CDK2AP2O75956 126 aa16.64■□□□□ 0.25
CPSF1-214ENST00000622776 TMEM256Q8N2U0 113 aa16.64■□□□□ 0.25
CPSF1-214ENST00000622776 OR8A1Q8NGG7 326 aa16.64■□□□□ 0.25
CPSF1-214ENST00000622776 HYPMO75409 117 aa16.63■□□□□ 0.25
CPSF1-214ENST00000622776 CXCL3P19876 107 aa16.63■□□□□ 0.25
CPSF1-214ENST00000622776 TAS2R60P59551 318 aa16.63■□□□□ 0.25
CPSF1-214ENST00000622776 MCFD2Q8NI22 146 aa16.63■□□□□ 0.25
CPSF1-214ENST00000622776 PPP1R14DQ9NXH3 145 aa16.63■□□□□ 0.25
CPSF1-214ENST00000622776 LINC00588Q9Y4M8 146 aa16.63■□□□□ 0.25
CPSF1-214ENST00000622776 PLP1P60201 277 aa16.62■□□□□ 0.25
CPSF1-214ENST00000622776 PSG3Q16557 428 aa16.62■□□□□ 0.25
CPSF1-214ENST00000622776 PYDC2Q56P42 97 aa16.62■□□□□ 0.25
CPSF1-214ENST00000622776 RNF141Q8WVD5 230 aa16.62■□□□□ 0.25
CPSF1-214ENST00000622776 A0A087X0K7 114 aa16.61■□□□□ 0.25
CPSF1-214ENST00000622776 OR5G3P0C626 314 aa16.61■□□□□ 0.25
CPSF1-214ENST00000622776 LINC00869P0C866 280 aa16.61■□□□□ 0.25
CPSF1-214ENST00000622776 HTN1P15515 57 aa16.61■□□□□ 0.25
CPSF1-214ENST00000622776 ID3Q02535 119 aa16.61■□□□□ 0.25
CPSF1-214ENST00000622776 C16orf74Q96GX8 76 aa16.61■□□□□ 0.25
CPSF1-214ENST00000622776 UHRF2Q96PU4 802 aa16.61■□□□□ 0.25
CPSF1-214ENST00000622776 TIMM8BQ9Y5J9 83 aaPredicted RBP16.61■□□□□ 0.25
CPSF1-214ENST00000622776 H3BMQ9 156 aa16.6■□□□□ 0.25
CPSF1-214ENST00000622776 SELENOTP62341 195 aa16.6■□□□□ 0.25
CPSF1-214ENST00000622776 POLR2GP62487 172 aaKnown RBP eCLIP16.6■□□□□ 0.25
CPSF1-214ENST00000622776 LRRC20Q8TCA0 184 aa16.6■□□□□ 0.25
CPSF1-214ENST00000622776 PSENENQ9NZ42 101 aa16.6■□□□□ 0.25
CPSF1-214ENST00000622776 PRB4P10163 310 aaPredicted RBP16.59■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms