RNA–Protein interactions for RNA: ENST00000618327.4

CIITA-213, Transcript of class II major histocompatibility complex transactivator, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene CIITA, Length 4,657 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-213ENST00000618327 A0A1B0GUT8 65 aa11.24□□□□□ -0.61
CIITA-213ENST00000618327 J3QKU1 62 aa11.24□□□□□ -0.61
CIITA-213ENST00000618327 IGHV2-70P01814 119 aa11.24□□□□□ -0.61
CIITA-213ENST00000618327 SNRPD3P62318 126 aaKnown RBP11.24□□□□□ -0.61
CIITA-213ENST00000618327 FBXL19-AS1Q494R0 122 aa11.24□□□□□ -0.61
CIITA-213ENST00000618327 TMEM170AQ8WVE7 144 aa11.24□□□□□ -0.61
CIITA-213ENST00000618327 A0A1B0GWJ7 208 aa11.23□□□□□ -0.61
CIITA-213ENST00000618327 TMEM50AO95807 157 aa11.23□□□□□ -0.61
CIITA-213ENST00000618327 MSMPQ1L6U9 139 aa11.23□□□□□ -0.61
CIITA-213ENST00000618327 PRELID3AQ96N28 172 aa11.23□□□□□ -0.61
CIITA-213ENST00000618327 RNASE1P07998 156 aaKnown RBP11.23□□□□□ -0.61
CIITA-213ENST00000618327 COPS9Q8WXC6 57 aa11.23□□□□□ -0.61
CIITA-213ENST00000618327 GPR82Q96P67 336 aa11.23□□□□□ -0.61
CIITA-213ENST00000618327 TRAV1-1A0A0B4J248 108 aa11.23□□□□□ -0.61
CIITA-213ENST00000618327 A0A1W2PRE2 83 aa11.23□□□□□ -0.61
CIITA-213ENST00000618327 MEIG1Q5JSS6 88 aa11.23□□□□□ -0.61
CIITA-213ENST00000618327 TMEM170BQ5T4T1 132 aa11.23□□□□□ -0.61
CIITA-213ENST00000618327 ITLN2Q8WWU7 325 aaPredicted RBP11.23□□□□□ -0.61
CIITA-213ENST00000618327 NUDT11Q96G61 164 aa11.23□□□□□ -0.61
CIITA-213ENST00000618327 C5orf30Q96GV9 206 aa11.23□□□□□ -0.61
CIITA-213ENST00000618327 A0A1W2PPI3 338 aa11.23□□□□□ -0.61
CIITA-213ENST00000618327 CA1P00915 261 aaPredicted RBP11.23□□□□□ -0.61
CIITA-213ENST00000618327 GATA3P23771 443 aa11.23□□□□□ -0.61
CIITA-213ENST00000618327 SAMD13Q5VXD3 122 aa11.23□□□□□ -0.61
CIITA-213ENST00000618327 C8orf46Q8TAG6 207 aa11.23□□□□□ -0.61
CIITA-213ENST00000618327 GEMIN7Q9H840 131 aaKnown RBP11.23□□□□□ -0.61
CIITA-213ENST00000618327 H3BUT2 72 aa11.22□□□□□ -0.61
CIITA-213ENST00000618327 PSG1P11464 419 aa11.22□□□□□ -0.61
CIITA-213ENST00000618327 TYMSP04818 313 aa11.22□□□□□ -0.61
CIITA-213ENST00000618327 ATP5LO75964 103 aa11.22□□□□□ -0.61
CIITA-213ENST00000618327 GPX1P07203 203 aa11.22□□□□□ -0.61
CIITA-213ENST00000618327 PAX9P55771 341 aa11.22□□□□□ -0.61
CIITA-213ENST00000618327 TRGV9Q99603 122 aa11.22□□□□□ -0.61
CIITA-213ENST00000618327 PRORYQ9H606 182 aa11.22□□□□□ -0.61
CIITA-213ENST00000618327 SEPSECSQ9HD40 501 aaKnown RBP11.22□□□□□ -0.61
CIITA-213ENST00000618327 C22orf46C9J442 243 aa11.21□□□□□ -0.61
CIITA-213ENST00000618327 RUSC1-AS1Q66K80 236 aa11.21□□□□□ -0.61
CIITA-213ENST00000618327 DDB2Q92466 427 aa11.21□□□□□ -0.61
CIITA-213ENST00000618327 DUX5Q96PT3 197 aa11.21□□□□□ -0.61
CIITA-213ENST00000618327 JKAMPQ9P055 326 aa11.21□□□□□ -0.61
CIITA-213ENST00000618327 TRAV5A0A0B4J249 113 aa11.21□□□□□ -0.61
CIITA-213ENST00000618327 CD5P06127 495 aa11.21□□□□□ -0.61
CIITA-213ENST00000618327 CNTFRP26992 372 aa11.21□□□□□ -0.61
CIITA-213ENST00000618327 MLANAQ16655 118 aa11.21□□□□□ -0.61
CIITA-213ENST00000618327 LDLRAD2Q5SZI1 272 aa11.21□□□□□ -0.61
CIITA-213ENST00000618327 AGMATQ9BSE5 352 aa11.21□□□□□ -0.61
CIITA-213ENST00000618327 OTORQ9NRC9 128 aa11.21□□□□□ -0.61
CIITA-213ENST00000618327 SPATA31B1PQ5VZV4 182 aa11.21□□□□□ -0.62
CIITA-213ENST00000618327 MAPK1IP1LQ8NDC0 245 aa11.21□□□□□ -0.62
CIITA-213ENST00000618327 HIST1H2BLQ99880 126 aa11.21□□□□□ -0.62
CIITA-213ENST00000618327 APOMO95445 188 aa11.21□□□□□ -0.62
CIITA-213ENST00000618327 ZNF562Q6V9R5 426 aa11.21□□□□□ -0.62
CIITA-213ENST00000618327 DIAPH2-AS1Q14236 149 aa11.2□□□□□ -0.62
CIITA-213ENST00000618327 FBLN7Q53RD9 439 aa11.2□□□□□ -0.62
CIITA-213ENST00000618327 FAM74A4Q5TZK3 123 aa11.2□□□□□ -0.62
CIITA-213ENST00000618327 FMC1Q96HJ9 113 aa11.2□□□□□ -0.62
CIITA-213ENST00000618327 SRSF8Q9BRL6 282 aaKnown RBP11.2□□□□□ -0.62
CIITA-213ENST00000618327 IGHV1-69DA0A0B4J2H0 117 aa11.2□□□□□ -0.62
CIITA-213ENST00000618327 IGHV1-69P01742 117 aa11.2□□□□□ -0.62
CIITA-213ENST00000618327 PAX8Q06710 450 aa11.2□□□□□ -0.62
CIITA-213ENST00000618327 TCF23Q7RTU1 214 aa11.2□□□□□ -0.62
CIITA-213ENST00000618327 NDUFA4L2Q9NRX3 87 aa11.2□□□□□ -0.62
CIITA-213ENST00000618327 COL4A2P08572 1712 aa11.2□□□□□ -0.62
CIITA-213ENST00000618327 FNDC10F2Z333 226 aa11.2□□□□□ -0.62
CIITA-213ENST00000618327 PF4P02776 101 aa11.2□□□□□ -0.62
CIITA-213ENST00000618327 PPP1R17O96001 155 aa11.19□□□□□ -0.62
CIITA-213ENST00000618327 JMJD8Q96S16 334 aa11.19□□□□□ -0.62
CIITA-213ENST00000618327 GNG5P63218 68 aa11.19□□□□□ -0.62
CIITA-213ENST00000618327 EPDR1Q9UM22 224 aa11.19□□□□□ -0.62
CIITA-213ENST00000618327 MRPS16Q9Y3D3 137 aaKnown RBP11.19□□□□□ -0.62
CIITA-213ENST00000618327 TRAV9-2A0A087WT02 112 aa11.19□□□□□ -0.62
CIITA-213ENST00000618327 TSPOP30536 169 aa11.19□□□□□ -0.62
CIITA-213ENST00000618327 FOXC2Q99958 501 aa11.19□□□□□ -0.62
CIITA-213ENST00000618327 COLCA2A8K830 154 aa11.18□□□□□ -0.62
CIITA-213ENST00000618327 IGHV2-5P01817 119 aa11.18□□□□□ -0.62
CIITA-213ENST00000618327 MRAP2Q96G30 205 aa11.18□□□□□ -0.62
CIITA-213ENST00000618327 HIGD1CA8MV81 97 aa11.18□□□□□ -0.62
CIITA-213ENST00000618327 UBE2L6O14933 153 aa11.18□□□□□ -0.62
CIITA-213ENST00000618327 LINC00614P0C842 121 aa11.18□□□□□ -0.62
CIITA-213ENST00000618327 CHD7Q9P2D1 2997 aa11.18□□□□□ -0.62
CIITA-213ENST00000618327 IZUMO1RA6ND01 250 aa11.18□□□□□ -0.62
CIITA-213ENST00000618327 IGKV3-20P01619 116 aa11.18□□□□□ -0.62
CIITA-213ENST00000618327 PLA2G5P39877 138 aa11.18□□□□□ -0.62
CIITA-213ENST00000618327 IL15RAQ13261 267 aa11.18□□□□□ -0.62
CIITA-213ENST00000618327 KIR3DL3Q8N743 410 aa11.18□□□□□ -0.62
CIITA-213ENST00000618327 RPP21Q9H633 154 aaKnown RBP11.18□□□□□ -0.62
CIITA-213ENST00000618327 A0A1W2PRX2 142 aa11.18□□□□□ -0.62
CIITA-213ENST00000618327 ZNF56Q15929 161 aa11.18□□□□□ -0.62
CIITA-213ENST00000618327 SLC50A1Q9BRV3 221 aa11.18□□□□□ -0.62
CIITA-213ENST00000618327 COL5A1P20908 1838 aaPredicted RBP11.17□□□□□ -0.62
CIITA-213ENST00000618327 ANKRD11Q6UB99 2663 aaPredicted RBP11.17□□□□□ -0.62
CIITA-213ENST00000618327 ORMDL3Q8N138 153 aa11.17□□□□□ -0.62
CIITA-213ENST00000618327 C8orf31Q8N9H6 132 aa11.17□□□□□ -0.62
CIITA-213ENST00000618327 RAX2Q96IS3 184 aa11.17□□□□□ -0.62
CIITA-213ENST00000618327 SLC25A39Q9BZJ4 359 aaPredicted RBP11.17□□□□□ -0.62
CIITA-213ENST00000618327 VCX2Q9H322 139 aa11.17□□□□□ -0.62
CIITA-213ENST00000618327 ATG2AQ2TAZ0 1938 aa11.17□□□□□ -0.62
CIITA-213ENST00000618327 TRBV24-1A0A075B6N3 115 aa11.17□□□□□ -0.62
CIITA-213ENST00000618327 SUMO2P61956 95 aaKnown RBP11.17□□□□□ -0.62
CIITA-213ENST00000618327 HIST3H2BBQ8N257 126 aa11.17□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms