RNA–Protein interactions for RNA: ENST00000616974.1

LINC00540-202, long intergenic non-protein coding RNA 540, humanhuman

TSL 1 (best)

Gene LINC00540, Length 2,143 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-202ENST00000616974 TM2D3Q9BRN9 247 aa9.94□□□□□ -0.82
LINC00540-202ENST00000616974 TMEM231Q9H6L2 316 aa9.94□□□□□ -0.82
LINC00540-202ENST00000616974 PXMP4Q9Y6I8 212 aa9.94□□□□□ -0.82
LINC00540-202ENST00000616974 RNF222A6NCQ9 220 aa9.93□□□□□ -0.82
LINC00540-202ENST00000616974 FABP1P07148 127 aa9.93□□□□□ -0.82
LINC00540-202ENST00000616974 B2MP61769 119 aa9.93□□□□□ -0.82
LINC00540-202ENST00000616974 FGL1Q08830 312 aa9.93□□□□□ -0.82
LINC00540-202ENST00000616974 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa9.93□□□□□ -0.82
LINC00540-202ENST00000616974 ZNF546Q86UE3 836 aa9.93□□□□□ -0.82
LINC00540-202ENST00000616974 GRAMD2BQ96HH9 432 aa9.93□□□□□ -0.82
LINC00540-202ENST00000616974 NARS2Q96I59 477 aaKnown RBP9.93□□□□□ -0.82
LINC00540-202ENST00000616974 WDR61Q9GZS3 305 aaKnown RBP9.93□□□□□ -0.82
LINC00540-202ENST00000616974 SLC25A31Q9H0C2 315 aa9.93□□□□□ -0.82
LINC00540-202ENST00000616974 SLC39A9Q9NUM3 307 aa9.93□□□□□ -0.82
LINC00540-202ENST00000616974 FBXL17Q9UF56 701 aa9.93□□□□□ -0.82
LINC00540-202ENST00000616974 FXYD6-FXYD2A0A087WZ82 144 aa9.92□□□□□ -0.82
LINC00540-202ENST00000616974 TRAV8-2A0A0B4J237 113 aa9.92□□□□□ -0.82
LINC00540-202ENST00000616974 SELENOTP62341 195 aa9.92□□□□□ -0.82
LINC00540-202ENST00000616974 OR11H4Q8NGC9 324 aa9.92□□□□□ -0.82
LINC00540-202ENST00000616974 hCG_2014768A0A024R1R8 64 aa9.92□□□□□ -0.82
LINC00540-202ENST00000616974 A0A1B0GVG6 124 aa9.92□□□□□ -0.82
LINC00540-202ENST00000616974 HELTA6NFD8 242 aa9.92□□□□□ -0.82
LINC00540-202ENST00000616974 SLC17A3O00476 420 aa9.92□□□□□ -0.82
LINC00540-202ENST00000616974 ZNF705DP0CH99 300 aaPredicted RBP9.92□□□□□ -0.82
LINC00540-202ENST00000616974 ZNF705BP0CI00 300 aaPredicted RBP9.92□□□□□ -0.82
LINC00540-202ENST00000616974 AP2S1P53680 142 aaPredicted RBP9.92□□□□□ -0.82
LINC00540-202ENST00000616974 PAFAH1B2P68402 229 aa9.92□□□□□ -0.82
LINC00540-202ENST00000616974 ACTL10Q5JWF8 245 aa9.92□□□□□ -0.82
LINC00540-202ENST00000616974 RCHY1Q96PM5 261 aa9.92□□□□□ -0.82
LINC00540-202ENST00000616974 ATP5SQ99766 215 aa9.92□□□□□ -0.82
LINC00540-202ENST00000616974 SEPSECSQ9HD40 501 aaKnown RBP9.92□□□□□ -0.82
LINC00540-202ENST00000616974 COX7A2P2O60397 106 aa9.91□□□□□ -0.82
LINC00540-202ENST00000616974 GIG44P09565 113 aaPredicted RBP9.91□□□□□ -0.82
LINC00540-202ENST00000616974 PET100P0DJ07 73 aa9.91□□□□□ -0.82
LINC00540-202ENST00000616974 BMI1P35226 326 aa9.91□□□□□ -0.82
LINC00540-202ENST00000616974 RPL29P47914 159 aaKnown RBP9.91□□□□□ -0.82
LINC00540-202ENST00000616974 RAP2BP61225 183 aa9.91□□□□□ -0.82
LINC00540-202ENST00000616974 CD300CQ08708 224 aa9.91□□□□□ -0.82
LINC00540-202ENST00000616974 DEFB135Q30KP9 77 aa9.91□□□□□ -0.82
LINC00540-202ENST00000616974 LINC00052Q96N35 136 aa9.91□□□□□ -0.82
LINC00540-202ENST00000616974 H3BQ15 152 aa9.91□□□□□ -0.82
LINC00540-202ENST00000616974 ATP6V1FQ16864 119 aa9.91□□□□□ -0.82
LINC00540-202ENST00000616974 LOC102724200A0A096LPH7 203 aaPredicted RBP9.9□□□□□ -0.82
LINC00540-202ENST00000616974 IGKV3-20P01619 116 aa9.9□□□□□ -0.82
LINC00540-202ENST00000616974 C1orf194Q5T5A4 169 aa9.9□□□□□ -0.82
LINC00540-202ENST00000616974 C10orf113Q5VZT2 155 aa9.9□□□□□ -0.82
LINC00540-202ENST00000616974 CFDP00746 253 aaPredicted RBP9.89□□□□□ -0.83
LINC00540-202ENST00000616974 PYYP10082 97 aa9.89□□□□□ -0.83
LINC00540-202ENST00000616974 C4BPBP20851 252 aa9.89□□□□□ -0.83
LINC00540-202ENST00000616974 MIR17HGQ75NE6 70 aa9.89□□□□□ -0.83
LINC00540-202ENST00000616974 SH3BGRL3Q9H299 93 aa9.89□□□□□ -0.83
LINC00540-202ENST00000616974 DNAJC4Q9NNZ3 241 aa9.89□□□□□ -0.83
LINC00540-202ENST00000616974 TNFSF18Q9UNG2 199 aa9.89□□□□□ -0.83
LINC00540-202ENST00000616974 U3KQK5 164 aa9.89□□□□□ -0.83
LINC00540-202ENST00000616974 Q6ZNX1 250 aa9.89□□□□□ -0.83
LINC00540-202ENST00000616974 HSD17B11Q8NBQ5 300 aa9.89□□□□□ -0.83
LINC00540-202ENST00000616974 AQP10Q96PS8 301 aa9.89□□□□□ -0.83
LINC00540-202ENST00000616974 CLEC5AQ9NY25 188 aa9.89□□□□□ -0.83
LINC00540-202ENST00000616974 RYR3Q15413 4870 aa9.88□□□□□ -0.83
LINC00540-202ENST00000616974 TRAV2A0A0B4J234 112 aa9.88□□□□□ -0.83
LINC00540-202ENST00000616974 ARPC5O15511 151 aa9.88□□□□□ -0.83
LINC00540-202ENST00000616974 CD5P06127 495 aa9.88□□□□□ -0.83
LINC00540-202ENST00000616974 FXYD7P58549 80 aa9.88□□□□□ -0.83
LINC00540-202ENST00000616974 ZNF705FA8MVS1 300 aaPredicted RBP9.88□□□□□ -0.83
LINC00540-202ENST00000616974 RPL7L1Q6DKI1 246 aaKnown RBP9.88□□□□□ -0.83
LINC00540-202ENST00000616974 Q6ZRG5 221 aa9.88□□□□□ -0.83
LINC00540-202ENST00000616974 OVOL2Q9BRP0 275 aa9.88□□□□□ -0.83
LINC00540-202ENST00000616974 GALR1P47211 349 aa9.87□□□□□ -0.83
LINC00540-202ENST00000616974 RAB31Q13636 194 aa9.87□□□□□ -0.83
LINC00540-202ENST00000616974 FAM78BQ5VT40 261 aa9.87□□□□□ -0.83
LINC00540-202ENST00000616974 TRPT1Q86TN4 253 aaKnown RBP9.87□□□□□ -0.83
LINC00540-202ENST00000616974 ZNF503Q96F45 646 aa9.87□□□□□ -0.83
LINC00540-202ENST00000616974 ST6GAL2Q96JF0 529 aa9.87□□□□□ -0.83
LINC00540-202ENST00000616974 FAM167A-AS1Q96KT0 104 aa9.87□□□□□ -0.83
LINC00540-202ENST00000616974 C16orf92Q96LL3 132 aa9.87□□□□□ -0.83
LINC00540-202ENST00000616974 SLC25A2Q9BXI2 301 aa9.87□□□□□ -0.83
LINC00540-202ENST00000616974 ZNF586Q9NXT0 402 aa9.87□□□□□ -0.83
LINC00540-202ENST00000616974 DYNC2H1Q8NCM8 4307 aaKnown RBP9.87□□□□□ -0.83
LINC00540-202ENST00000616974 IGLC2P0DOY2 106 aa9.86□□□□□ -0.83
LINC00540-202ENST00000616974 RAB2AP61019 212 aa9.86□□□□□ -0.83
LINC00540-202ENST00000616974 FFAR4Q5NUL3 377 aa9.86□□□□□ -0.83
LINC00540-202ENST00000616974 PRAC2D3DTV9 90 aa9.86□□□□□ -0.83
LINC00540-202ENST00000616974 H3BMM0 161 aa9.86□□□□□ -0.83
LINC00540-202ENST00000616974 HMGB3O15347 200 aaKnown RBP9.86□□□□□ -0.83
LINC00540-202ENST00000616974 MPDU1O75352 247 aa9.86□□□□□ -0.83
LINC00540-202ENST00000616974 SACSQ9NZJ4 4579 aa9.85□□□□□ -0.83
LINC00540-202ENST00000616974 ELOA3CA0A087WX78 387 aaPredicted RBP9.85□□□□□ -0.83
LINC00540-202ENST00000616974 OR10J4P0C629 311 aa9.85□□□□□ -0.83
LINC00540-202ENST00000616974 NHLRC4P0CG21 123 aaPredicted RBP9.85□□□□□ -0.83
LINC00540-202ENST00000616974 ATF4P18848 351 aaPredicted RBP9.85□□□□□ -0.83
LINC00540-202ENST00000616974 NUP62P37198 522 aaPredicted RBP9.85□□□□□ -0.83
LINC00540-202ENST00000616974 SNRPD3P62318 126 aaKnown RBP9.85□□□□□ -0.83
LINC00540-202ENST00000616974 STHQ8IWL8 128 aa9.85□□□□□ -0.83
LINC00540-202ENST00000616974 SPATA25Q9BR10 227 aa9.85□□□□□ -0.83
LINC00540-202ENST00000616974 SLC35B3Q9H1N7 401 aa9.85□□□□□ -0.83
LINC00540-202ENST00000616974 ISLRO14498 428 aa9.85□□□□□ -0.83
LINC00540-202ENST00000616974 CA1P00915 261 aaPredicted RBP9.85□□□□□ -0.83
LINC00540-202ENST00000616974 RPL7P18124 248 aaKnown RBP9.85□□□□□ -0.83
LINC00540-202ENST00000616974 CXCL2P19875 107 aa9.85□□□□□ -0.83
LINC00540-202ENST00000616974 ATP6V0CP27449 155 aa9.85□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms