RNA–Protein interactions for RNA: ENST00000602239.1

SHKBP1-228, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 450 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-228ENST00000602239 TEX48A0A1B0GUV7 120 aa11.13□□□□□ -0.63
SHKBP1-228ENST00000602239 M0R2Z0 102 aa11.13□□□□□ -0.63
SHKBP1-228ENST00000602239 CRXO43186 299 aaPredicted RBP11.13□□□□□ -0.63
SHKBP1-228ENST00000602239 CFDP00746 253 aaPredicted RBP11.13□□□□□ -0.63
SHKBP1-228ENST00000602239 CNN1P51911 297 aaKnown RBP11.13□□□□□ -0.63
SHKBP1-228ENST00000602239 AP3S2P59780 193 aa11.13□□□□□ -0.63
SHKBP1-228ENST00000602239 DAD1P61803 113 aa11.13□□□□□ -0.63
SHKBP1-228ENST00000602239 RPP30P78346 268 aaKnown RBP11.13□□□□□ -0.63
SHKBP1-228ENST00000602239 SPINK13Q1W4C9 94 aa11.13□□□□□ -0.63
SHKBP1-228ENST00000602239 RNF182Q8N6D2 247 aa11.13□□□□□ -0.63
SHKBP1-228ENST00000602239 BPIFCQ8NFQ6 507 aa11.13□□□□□ -0.63
SHKBP1-228ENST00000602239 OR4D5Q8NGN0 318 aa11.13□□□□□ -0.63
SHKBP1-228ENST00000602239 ADAP1O75689 374 aa11.12□□□□□ -0.63
SHKBP1-228ENST00000602239 MED14OSP0DP75 135 aa11.12□□□□□ -0.63
SHKBP1-228ENST00000602239 PRB4P10163 310 aaPredicted RBP11.12□□□□□ -0.63
SHKBP1-228ENST00000602239 SAMD13Q5VXD3 122 aa11.12□□□□□ -0.63
SHKBP1-228ENST00000602239 ACOT7LQ6ZUV0 252 aa11.12□□□□□ -0.63
SHKBP1-228ENST00000602239 OR11H7Q8NGC8 314 aa11.12□□□□□ -0.63
SHKBP1-228ENST00000602239 TMEM208Q9BTX3 173 aa11.12□□□□□ -0.63
SHKBP1-228ENST00000602239 TMEM147Q9BVK8 224 aa11.12□□□□□ -0.63
SHKBP1-228ENST00000602239 NOL3O60936 208 aaKnown RBP11.11□□□□□ -0.63
SHKBP1-228ENST00000602239 POLR2GP62487 172 aaKnown RBP eCLIP11.11□□□□□ -0.63
SHKBP1-228ENST00000602239 ID3Q02535 119 aa11.11□□□□□ -0.63
SHKBP1-228ENST00000602239 AKR1C1Q04828 323 aa11.11□□□□□ -0.63
SHKBP1-228ENST00000602239 FGL1Q08830 312 aa11.11□□□□□ -0.63
SHKBP1-228ENST00000602239 FCN2Q15485 313 aa11.11□□□□□ -0.63
SHKBP1-228ENST00000602239 RNF212Q495C1 297 aa11.11□□□□□ -0.63
SHKBP1-228ENST00000602239 TMEM144Q7Z5S9 345 aa11.11□□□□□ -0.63
SHKBP1-228ENST00000602239 SLC25A39Q9BZJ4 359 aaPredicted RBP11.11□□□□□ -0.63
SHKBP1-228ENST00000602239 STRAPQ9Y3F4 350 aaKnown RBP11.11□□□□□ -0.63
SHKBP1-228ENST00000602239 NACAE9PAV3 2078 aa11.11□□□□□ -0.63
SHKBP1-228ENST00000602239 PMS2P5A8MQ11 134 aa11.1□□□□□ -0.63
SHKBP1-228ENST00000602239 H3BRN7 92 aa11.1□□□□□ -0.63
SHKBP1-228ENST00000602239 CCNKO75909 580 aa11.1□□□□□ -0.63
SHKBP1-228ENST00000602239 AZU1P20160 251 aa11.1□□□□□ -0.63
SHKBP1-228ENST00000602239 CYP2G1PQ6ZSU1 146 aa11.1□□□□□ -0.63
SHKBP1-228ENST00000602239 BAP18Q8IXM2 172 aa11.1□□□□□ -0.63
SHKBP1-228ENST00000602239 MUC4Q99102 2169 aa11.1□□□□□ -0.63
SHKBP1-228ENST00000602239 TRAV12-2A0A075B6T6 113 aa11.09□□□□□ -0.63
SHKBP1-228ENST00000602239 C9orf170A2RU37 121 aa11.09□□□□□ -0.63
SHKBP1-228ENST00000602239 SMCO3A2RU48 225 aa11.09□□□□□ -0.63
SHKBP1-228ENST00000602239 DUSP14O95147 198 aaKnown RBP11.09□□□□□ -0.63
SHKBP1-228ENST00000602239 IL5P05113 134 aa11.09□□□□□ -0.63
SHKBP1-228ENST00000602239 GPR82Q96P67 336 aa11.09□□□□□ -0.63
SHKBP1-228ENST00000602239 UHRF2Q96PU4 802 aa11.09□□□□□ -0.63
SHKBP1-228ENST00000602239 SHANK2-AS3Q9BTD1 123 aa11.09□□□□□ -0.63
SHKBP1-228ENST00000602239 PSENENQ9NZ42 101 aa11.09□□□□□ -0.63
SHKBP1-228ENST00000602239 FLVCR2Q9UPI3 526 aa11.09□□□□□ -0.63
SHKBP1-228ENST00000602239 PLAC8L1A1L4L8 177 aa11.08□□□□□ -0.64
SHKBP1-228ENST00000602239 DEFB130BP0DP73 79 aa11.08□□□□□ -0.64
SHKBP1-228ENST00000602239 DEFB130AP0DP74 79 aa11.08□□□□□ -0.64
SHKBP1-228ENST00000602239 CCDC190Q86UF4 302 aa11.08□□□□□ -0.64
SHKBP1-228ENST00000602239 ZNF738Q8NE65 137 aa11.08□□□□□ -0.64
SHKBP1-228ENST00000602239 HIGD1AQ9Y241 93 aa11.08□□□□□ -0.64
SHKBP1-228ENST00000602239 DYNC1H1Q14204 4646 aaKnown RBP11.08□□□□□ -0.64
SHKBP1-228ENST00000602239 DNAH11Q96DT5 4516 aa11.07□□□□□ -0.64
SHKBP1-228ENST00000602239 HYPMO75409 117 aa11.07□□□□□ -0.64
SHKBP1-228ENST00000602239 INSP01308 110 aa11.07□□□□□ -0.64
SHKBP1-228ENST00000602239 OR5G3P0C626 314 aa11.07□□□□□ -0.64
SHKBP1-228ENST00000602239 RRAS2P62070 204 aaPredicted RBP11.07□□□□□ -0.64
SHKBP1-228ENST00000602239 C1orf134Q5TEV5 83 aa11.07□□□□□ -0.64
SHKBP1-228ENST00000602239 PATE2Q6UY27 113 aa11.07□□□□□ -0.64
SHKBP1-228ENST00000602239 ZNF575Q86XF7 245 aa11.07□□□□□ -0.64
SHKBP1-228ENST00000602239 DEDD2Q8WXF8 326 aa11.07□□□□□ -0.64
SHKBP1-228ENST00000602239 LYRM9A8MSI8 78 aa11.06□□□□□ -0.64
SHKBP1-228ENST00000602239 SSSCA1O60232 199 aa11.06□□□□□ -0.64
SHKBP1-228ENST00000602239 LINC00869P0C866 280 aa11.06□□□□□ -0.64
SHKBP1-228ENST00000602239 RPL7P18124 248 aaKnown RBP11.06□□□□□ -0.64
SHKBP1-228ENST00000602239 CXCL3P19876 107 aa11.06□□□□□ -0.64
SHKBP1-228ENST00000602239 S100A5P33763 92 aa11.06□□□□□ -0.64
SHKBP1-228ENST00000602239 PLP1P60201 277 aa11.06□□□□□ -0.64
SHKBP1-228ENST00000602239 RAP2BP61225 183 aa11.06□□□□□ -0.64
SHKBP1-228ENST00000602239 SMIM8Q96KF7 97 aa11.06□□□□□ -0.64
SHKBP1-228ENST00000602239 BOLA2-SMG1P6H3BVE0 249 aa11.05□□□□□ -0.64
SHKBP1-228ENST00000602239 SNRPCP09234 159 aaKnown RBP11.05□□□□□ -0.64
SHKBP1-228ENST00000602239 METTL15P1P0C7V9 234 aa11.05□□□□□ -0.64
SHKBP1-228ENST00000602239 HTN1P15515 57 aa11.05□□□□□ -0.64
SHKBP1-228ENST00000602239 TSPOP30536 169 aa11.05□□□□□ -0.64
SHKBP1-228ENST00000602239 S100A7P31151 101 aa11.05□□□□□ -0.64
SHKBP1-228ENST00000602239 UBE2MP61081 183 aaKnown RBP11.05□□□□□ -0.64
SHKBP1-228ENST00000602239 RHOBP62745 196 aa11.05□□□□□ -0.64
SHKBP1-228ENST00000602239 HIST1H1AQ02539 215 aaPredicted RBP11.05□□□□□ -0.64
SHKBP1-228ENST00000602239 PSG3Q16557 428 aa11.05□□□□□ -0.64
SHKBP1-228ENST00000602239 BAK1Q16611 211 aa11.05□□□□□ -0.64
SHKBP1-228ENST00000602239 C15orf53Q8NAA6 179 aa11.05□□□□□ -0.64
SHKBP1-228ENST00000602239 OR8A1Q8NGG7 326 aa11.05□□□□□ -0.64
SHKBP1-228ENST00000602239 LINC01587Q99440 93 aa11.05□□□□□ -0.64
SHKBP1-228ENST00000602239 SRRQ9GZT4 340 aa11.05□□□□□ -0.64
SHKBP1-228ENST00000602239 CCDC160A6NGH7 325 aa11.04□□□□□ -0.64
SHKBP1-228ENST00000602239 F5H768 121 aa11.04□□□□□ -0.64
SHKBP1-228ENST00000602239 MRPS12O15235 138 aaKnown RBP11.04□□□□□ -0.64
SHKBP1-228ENST00000602239 NDUFB6O95139 128 aa11.04□□□□□ -0.64
SHKBP1-228ENST00000602239 OR4E1P0C645 316 aa11.04□□□□□ -0.64
SHKBP1-228ENST00000602239 B2MP61769 119 aa11.04□□□□□ -0.64
SHKBP1-228ENST00000602239 ARL16Q0P5N6 197 aa11.04□□□□□ -0.64
SHKBP1-228ENST00000602239 TMEM14EPQ6UXP3 125 aa11.04□□□□□ -0.64
SHKBP1-228ENST00000602239 KRTAP4-5Q9BYR2 181 aa11.04□□□□□ -0.64
SHKBP1-228ENST00000602239 ARL6Q9H0F7 186 aa11.04□□□□□ -0.64
SHKBP1-228ENST00000602239 A0A087X0K7 114 aa11.03□□□□□ -0.64
SHKBP1-228ENST00000602239 LINC00854A0A1B0GVQ3 168 aa11.03□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 66.5 ms