RNA–Protein interactions for RNA: ENST00000601849.1

VRK3-224, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 653 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-224ENST00000601849 DYNC2LI1Q8TCX1 351 aa6.78□□□□□ -1.32
VRK3-224ENST00000601849 LINC01587Q99440 93 aa6.78□□□□□ -1.32
VRK3-224ENST00000601849 IGKV1D-37A0A075B6S9 117 aa6.77□□□□□ -1.33
VRK3-224ENST00000601849 NBDYA0A0U1RRE5 68 aa6.77□□□□□ -1.33
VRK3-224ENST00000601849 CBY3A6NI87 242 aa6.77□□□□□ -1.33
VRK3-224ENST00000601849 CTDSP2O14595 271 aa6.77□□□□□ -1.33
VRK3-224ENST00000601849 ADAP1O75689 374 aa6.77□□□□□ -1.33
VRK3-224ENST00000601849 CDK2AP2O75956 126 aa6.77□□□□□ -1.33
VRK3-224ENST00000601849 TSPOP30536 169 aa6.77□□□□□ -1.33
VRK3-224ENST00000601849 CNN1P51911 297 aaKnown RBP6.77□□□□□ -1.33
VRK3-224ENST00000601849 RAP2BP61225 183 aa6.77□□□□□ -1.33
VRK3-224ENST00000601849 TMEM256Q8N2U0 113 aa6.77□□□□□ -1.33
VRK3-224ENST00000601849 THAP8Q8NA92 274 aa6.77□□□□□ -1.33
VRK3-224ENST00000601849 ZNF705GA8MUZ8 300 aaPredicted RBP6.76□□□□□ -1.33
VRK3-224ENST00000601849 ZNF701M0R085 212 aaPredicted RBP6.76□□□□□ -1.33
VRK3-224ENST00000601849 NOL3O60936 208 aaKnown RBP6.76□□□□□ -1.33
VRK3-224ENST00000601849 IAPPP10997 89 aa6.76□□□□□ -1.33
VRK3-224ENST00000601849 SLC25A6P12236 298 aa6.76□□□□□ -1.33
VRK3-224ENST00000601849 RPL7P18124 248 aaKnown RBP6.76□□□□□ -1.33
VRK3-224ENST00000601849 AP3S2P59780 193 aa6.76□□□□□ -1.33
VRK3-224ENST00000601849 AKR1C1Q04828 323 aa6.76□□□□□ -1.33
VRK3-224ENST00000601849 SPINK13Q1W4C9 94 aa6.76□□□□□ -1.33
VRK3-224ENST00000601849 TMEM128Q5BJH2 165 aa6.76□□□□□ -1.33
VRK3-224ENST00000601849 TMED4Q7Z7H5 227 aa6.76□□□□□ -1.33
VRK3-224ENST00000601849 ZNF738Q8NE65 137 aa6.76□□□□□ -1.33
VRK3-224ENST00000601849 SLC25A32Q9H2D1 315 aa6.76□□□□□ -1.33
VRK3-224ENST00000601849 MIXL1Q9H2W2 232 aa6.76□□□□□ -1.33
VRK3-224ENST00000601849 PRR13Q9NZ81 148 aa6.76□□□□□ -1.33
VRK3-224ENST00000601849 CCDC59Q9P031 241 aaKnown RBP6.76□□□□□ -1.33
VRK3-224ENST00000601849 TIMM8BQ9Y5J9 83 aaPredicted RBP6.76□□□□□ -1.33
VRK3-224ENST00000601849 FABP12A6NFH5 140 aa6.75□□□□□ -1.33
VRK3-224ENST00000601849 A8MTW9 85 aa6.75□□□□□ -1.33
VRK3-224ENST00000601849 M0R2Z0 102 aa6.75□□□□□ -1.33
VRK3-224ENST00000601849 WRBO00258 174 aa6.75□□□□□ -1.33
VRK3-224ENST00000601849 SYNGR2O43760 224 aa6.75□□□□□ -1.33
VRK3-224ENST00000601849 IL5P05113 134 aa6.75□□□□□ -1.33
VRK3-224ENST00000601849 HTN1P15515 57 aa6.75□□□□□ -1.33
VRK3-224ENST00000601849 VAMP1P23763 118 aa6.75□□□□□ -1.33
VRK3-224ENST00000601849 TAS2R60P59551 318 aa6.75□□□□□ -1.33
VRK3-224ENST00000601849 SELENOTP62341 195 aa6.75□□□□□ -1.33
VRK3-224ENST00000601849 TTC32Q5I0X7 151 aa6.75□□□□□ -1.33
VRK3-224ENST00000601849 SPANXN5Q5MJ07 72 aa6.75□□□□□ -1.33
VRK3-224ENST00000601849 ZNF493Q6ZR52 646 aa6.75□□□□□ -1.33
VRK3-224ENST00000601849 TMEM144Q7Z5S9 345 aa6.75□□□□□ -1.33
VRK3-224ENST00000601849 CCDC28AQ8IWP9 274 aa6.75□□□□□ -1.33
VRK3-224ENST00000601849 MAPKAPK5-AS1Q8N8E1 139 aa6.75□□□□□ -1.33
VRK3-224ENST00000601849 OR11H7Q8NGC8 314 aa6.75□□□□□ -1.33
VRK3-224ENST00000601849 OR10J6PQ8NGY7 276 aa6.75□□□□□ -1.33
VRK3-224ENST00000601849 C16orf74Q96GX8 76 aa6.75□□□□□ -1.33
VRK3-224ENST00000601849 STRAPQ9Y3F4 350 aaKnown RBP6.75□□□□□ -1.33
VRK3-224ENST00000601849 DNAH5Q8TE73 4624 aa6.75□□□□□ -1.33
VRK3-224ENST00000601849 CCDC160A6NGH7 325 aa6.74□□□□□ -1.33
VRK3-224ENST00000601849 BOLA2-SMG1P6H3BVE0 249 aa6.74□□□□□ -1.33
VRK3-224ENST00000601849 PITX3O75364 302 aa6.74□□□□□ -1.33
VRK3-224ENST00000601849 HYPMO75409 117 aa6.74□□□□□ -1.33
VRK3-224ENST00000601849 ANXA7P20073 488 aaKnown RBP6.74□□□□□ -1.33
VRK3-224ENST00000601849 TNP2Q05952 138 aa6.74□□□□□ -1.33
VRK3-224ENST00000601849 AMTNQ6UX39 209 aa6.74□□□□□ -1.33
VRK3-224ENST00000601849 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa6.74□□□□□ -1.33
VRK3-224ENST00000601849 LRTM2Q8N967 370 aa6.74□□□□□ -1.33
VRK3-224ENST00000601849 ZNRF2Q8NHG8 242 aa6.74□□□□□ -1.33
VRK3-224ENST00000601849 C20orf173Q96LM9 149 aa6.74□□□□□ -1.33
VRK3-224ENST00000601849 SLC25A21Q9BQT8 299 aaPredicted RBP6.74□□□□□ -1.33
VRK3-224ENST00000601849 SLIRPQ9GZT3 109 aaKnown RBP6.74□□□□□ -1.33
VRK3-224ENST00000601849 Q9H8V8 135 aa6.74□□□□□ -1.33
VRK3-224ENST00000601849 BATF3Q9NR55 127 aa6.74□□□□□ -1.33
VRK3-224ENST00000601849 HIGD1AQ9Y241 93 aa6.74□□□□□ -1.33
VRK3-224ENST00000601849 LRP1BQ9NZR2 4599 aa6.74□□□□□ -1.33
VRK3-224ENST00000601849 MUC4Q99102 2169 aa6.74□□□□□ -1.33
VRK3-224ENST00000601849 HSPG2P98160 4391 aa6.73□□□□□ -1.33
VRK3-224ENST00000601849 TRAV12-2A0A075B6T6 113 aa6.73□□□□□ -1.33
VRK3-224ENST00000601849 IGKV1OR2-108A0A075B7D4 117 aa6.73□□□□□ -1.33
VRK3-224ENST00000601849 SMCO3A2RU48 225 aa6.73□□□□□ -1.33
VRK3-224ENST00000601849 CRXO43186 299 aaPredicted RBP6.73□□□□□ -1.33
VRK3-224ENST00000601849 OR5G3P0C626 314 aa6.73□□□□□ -1.33
VRK3-224ENST00000601849 CDKN1BP46527 198 aa6.73□□□□□ -1.33
VRK3-224ENST00000601849 HIST1H1AQ02539 215 aaPredicted RBP6.73□□□□□ -1.33
VRK3-224ENST00000601849 OR5I1Q13606 314 aa6.73□□□□□ -1.33
VRK3-224ENST00000601849 SSX7Q7RTT5 188 aa6.73□□□□□ -1.33
VRK3-224ENST00000601849 TOMM5Q8N4H5 51 aa6.73□□□□□ -1.33
VRK3-224ENST00000601849 OR8A1Q8NGG7 326 aa6.73□□□□□ -1.33
VRK3-224ENST00000601849 GNPNAT1Q96EK6 184 aaPredicted RBP6.73□□□□□ -1.33
VRK3-224ENST00000601849 C20orf144Q9BQM9 153 aa6.73□□□□□ -1.33
VRK3-224ENST00000601849 SLC25A39Q9BZJ4 359 aaPredicted RBP6.73□□□□□ -1.33
VRK3-224ENST00000601849 NDUFA13Q9P0J0 144 aa6.73□□□□□ -1.33
VRK3-224ENST00000601849 H7BYZ3 331 aa6.72□□□□□ -1.33
VRK3-224ENST00000601849 HOXB5P09067 269 aa6.72□□□□□ -1.33
VRK3-224ENST00000601849 AZU1P20160 251 aa6.72□□□□□ -1.33
VRK3-224ENST00000601849 BTF3P20290 206 aaKnown RBP6.72□□□□□ -1.33
VRK3-224ENST00000601849 GATA2P23769 480 aaPredicted RBP6.72□□□□□ -1.33
VRK3-224ENST00000601849 FCN2Q15485 313 aa6.72□□□□□ -1.33
VRK3-224ENST00000601849 PSG3Q16557 428 aa6.72□□□□□ -1.33
VRK3-224ENST00000601849 IGFL4Q6B9Z1 124 aa6.72□□□□□ -1.33
VRK3-224ENST00000601849 CYP2G1PQ6ZSU1 146 aa6.72□□□□□ -1.33
VRK3-224ENST00000601849 BAP18Q8IXM2 172 aa6.72□□□□□ -1.33
VRK3-224ENST00000601849 RNF182Q8N6D2 247 aa6.72□□□□□ -1.33
VRK3-224ENST00000601849 DEDD2Q8WXF8 326 aa6.72□□□□□ -1.33
VRK3-224ENST00000601849 ZNF503Q96F45 646 aa6.72□□□□□ -1.33
VRK3-224ENST00000601849 SHANK2-AS3Q9BTD1 123 aa6.72□□□□□ -1.33
VRK3-224ENST00000601849 NPVFQ9HCQ7 196 aa6.72□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 124.7 ms