RNA–Protein interactions for RNA: ENST00000601341.5

VRK3-223, Transcript of vaccinia related kinase 3, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene VRK3, Length 1,777 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-223ENST00000601341 ARPC1AQ92747 370 aa9.2□□□□□ -0.94
VRK3-223ENST00000601341 PAXXQ9BUH6 204 aa9.2□□□□□ -0.94
VRK3-223ENST00000601341 ZNF355PQ9NSJ1 428 aa9.2□□□□□ -0.94
VRK3-223ENST00000601341 OTOGQ6ZRI0 2925 aa9.2□□□□□ -0.94
VRK3-223ENST00000601341 IGHV7-81A0A0B4J1V7 117 aa9.19□□□□□ -0.94
VRK3-223ENST00000601341 IGLV2-8P01709 118 aa9.19□□□□□ -0.94
VRK3-223ENST00000601341 IGHV4-59P01825 116 aa9.19□□□□□ -0.94
VRK3-223ENST00000601341 GATA2P23769 480 aaPredicted RBP9.19□□□□□ -0.94
VRK3-223ENST00000601341 ADMP35318 185 aa9.19□□□□□ -0.94
VRK3-223ENST00000601341 MLANAQ16655 118 aa9.19□□□□□ -0.94
VRK3-223ENST00000601341 REC114Q7Z4M0 266 aa9.19□□□□□ -0.94
VRK3-223ENST00000601341 MRPL18Q9H0U6 180 aaKnown RBP9.19□□□□□ -0.94
VRK3-223ENST00000601341 TMEM160Q9NX00 188 aa9.19□□□□□ -0.94
VRK3-223ENST00000601341 HLA-DQA1P01909 254 aa9.19□□□□□ -0.94
VRK3-223ENST00000601341 CRISP2P16562 243 aa9.19□□□□□ -0.94
VRK3-223ENST00000601341 MYCNOSP40205 109 aa9.19□□□□□ -0.94
VRK3-223ENST00000601341 RAB4BP61018 213 aa9.19□□□□□ -0.94
VRK3-223ENST00000601341 IBA57Q5T440 356 aaKnown RBP9.19□□□□□ -0.94
VRK3-223ENST00000601341 IL17RELQ6ZVW7 336 aa9.19□□□□□ -0.94
VRK3-223ENST00000601341 OR1L6Q8NGR2 347 aa9.19□□□□□ -0.94
VRK3-223ENST00000601341 WIPF2Q8TF74 440 aaPredicted RBP9.19□□□□□ -0.94
VRK3-223ENST00000601341 ZNF48Q96MX3 618 aaPredicted RBP9.19□□□□□ -0.94
VRK3-223ENST00000601341 ZMAT5Q9UDW3 170 aaKnown RBP9.19□□□□□ -0.94
VRK3-223ENST00000601341 KLF12Q9Y4X4 402 aa9.19□□□□□ -0.94
VRK3-223ENST00000601341 A8MWP6 167 aa9.18□□□□□ -0.94
VRK3-223ENST00000601341 SLC17A3O00476 420 aa9.18□□□□□ -0.94
VRK3-223ENST00000601341 AMY1AP04745 511 aa9.18□□□□□ -0.94
VRK3-223ENST00000601341 APELAP0DMC3 54 aa9.18□□□□□ -0.94
VRK3-223ENST00000601341 TPPP2P59282 170 aa9.18□□□□□ -0.94
VRK3-223ENST00000601341 SCGB2A2Q13296 93 aa9.18□□□□□ -0.94
VRK3-223ENST00000601341 OR10J3Q5JRS4 329 aa9.18□□□□□ -0.94
VRK3-223ENST00000601341 C9orf152Q5JTZ5 239 aa9.18□□□□□ -0.94
VRK3-223ENST00000601341 PATE2Q6UY27 113 aa9.18□□□□□ -0.94
VRK3-223ENST00000601341 FXYD5Q96DB9 178 aa9.18□□□□□ -0.94
VRK3-223ENST00000601341 FAM103A1Q9BTL3 118 aaKnown RBP9.18□□□□□ -0.94
VRK3-223ENST00000601341 TNFRSF19Q9NS68 423 aa9.18□□□□□ -0.94
VRK3-223ENST00000601341 PLXNB1O43157 2135 aa9.18□□□□□ -0.94
VRK3-223ENST00000601341 PEX7O00628 323 aa9.17□□□□□ -0.94
VRK3-223ENST00000601341 REG1AP05451 166 aa9.17□□□□□ -0.94
VRK3-223ENST00000601341 FOSL1P15407 271 aa9.17□□□□□ -0.94
VRK3-223ENST00000601341 CBLN1P23435 193 aa9.17□□□□□ -0.94
VRK3-223ENST00000601341 NDPQ00604 133 aa9.17□□□□□ -0.94
VRK3-223ENST00000601341 TMEM183BQ1AE95 376 aa9.17□□□□□ -0.94
VRK3-223ENST00000601341 ZNF329Q86UD4 541 aa9.17□□□□□ -0.94
VRK3-223ENST00000601341 OR8I2Q8N0Y5 310 aa9.17□□□□□ -0.94
VRK3-223ENST00000601341 CMTM2Q8TAZ6 248 aa9.17□□□□□ -0.94
VRK3-223ENST00000601341 HSPB9Q9BQS6 159 aa9.17□□□□□ -0.94
VRK3-223ENST00000601341 VPREB3Q9UKI3 123 aa9.17□□□□□ -0.94
VRK3-223ENST00000601341 F11RQ9Y624 299 aaKnown RBP9.17□□□□□ -0.94
VRK3-223ENST00000601341 SONP18583 2426 aaKnown RBP9.17□□□□□ -0.94
VRK3-223ENST00000601341 IZUMO1RA6ND01 250 aa9.17□□□□□ -0.94
VRK3-223ENST00000601341 LY6G6DO95868 133 aa9.17□□□□□ -0.94
VRK3-223ENST00000601341 OR5I1Q13606 314 aa9.17□□□□□ -0.94
VRK3-223ENST00000601341 MORN5Q5VZ52 161 aa9.17□□□□□ -0.94
VRK3-223ENST00000601341 LINC00305Q7Z4B0 112 aa9.17□□□□□ -0.94
VRK3-223ENST00000601341 C14orf144Q96I85 54 aa9.17□□□□□ -0.94
VRK3-223ENST00000601341 TMEM68Q96MH6 324 aa9.17□□□□□ -0.94
VRK3-223ENST00000601341 MS4A10Q96PG2 267 aa9.17□□□□□ -0.94
VRK3-223ENST00000601341 SMR3AQ99954 134 aa9.17□□□□□ -0.94
VRK3-223ENST00000601341 TMUB1Q9BVT8 246 aa9.17□□□□□ -0.94
VRK3-223ENST00000601341 SH2D7A6NKC9 451 aaPredicted RBP9.16□□□□□ -0.94
VRK3-223ENST00000601341 NPIPB5A8MRT5 1133 aa9.16□□□□□ -0.94
VRK3-223ENST00000601341 SNURFLB1AK76 121 aa9.16□□□□□ -0.94
VRK3-223ENST00000601341 HOXA3O43365 443 aaPredicted RBP9.16□□□□□ -0.94
VRK3-223ENST00000601341 HYPMO75409 117 aa9.16□□□□□ -0.94
VRK3-223ENST00000601341 EGR2P11161 476 aaPredicted RBP9.16□□□□□ -0.94
VRK3-223ENST00000601341 ZNF664Q8N3J9 261 aa9.16□□□□□ -0.94
VRK3-223ENST00000601341 TTC9CQ8N5M4 171 aa9.16□□□□□ -0.94
VRK3-223ENST00000601341 SIGLECL1Q8N7X8 197 aa9.16□□□□□ -0.94
VRK3-223ENST00000601341 NDUFAF3Q9BU61 184 aa9.16□□□□□ -0.94
VRK3-223ENST00000601341 WNT10AQ9GZT5 417 aa9.16□□□□□ -0.94
VRK3-223ENST00000601341 RNF24Q9Y225 148 aa9.16□□□□□ -0.94
VRK3-223ENST00000601341 ATP6V0E1O15342 81 aa9.15□□□□□ -0.94
VRK3-223ENST00000601341 HIST1H1EP10412 219 aaKnown RBP9.15□□□□□ -0.94
VRK3-223ENST00000601341 CT83Q5H943 113 aa9.15□□□□□ -0.94
VRK3-223ENST00000601341 ASPHD1Q5U4P2 390 aa9.15□□□□□ -0.94
VRK3-223ENST00000601341 TMEM136Q6ZRR5 245 aa9.15□□□□□ -0.94
VRK3-223ENST00000601341 ATP5L2Q7Z4Y8 100 aa9.15□□□□□ -0.94
VRK3-223ENST00000601341 BAGE2Q86Y30 109 aa9.15□□□□□ -0.94
VRK3-223ENST00000601341 TMEM256Q8N2U0 113 aa9.15□□□□□ -0.94
VRK3-223ENST00000601341 TMEM86BQ8N661 226 aa9.15□□□□□ -0.94
VRK3-223ENST00000601341 C5orf17Q8NAS9 161 aa9.15□□□□□ -0.94
VRK3-223ENST00000601341 TMEM14CQ9P0S9 112 aa9.15□□□□□ -0.94
VRK3-223ENST00000601341 EPDR1Q9UM22 224 aa9.15□□□□□ -0.94
VRK3-223ENST00000601341 MXRA5Q9NR99 2828 aa9.15□□□□□ -0.94
VRK3-223ENST00000601341 TRAV5A0A0B4J249 113 aa9.14□□□□□ -0.95
VRK3-223ENST00000601341 IGHG2P01859 326 aa9.14□□□□□ -0.95
VRK3-223ENST00000601341 MFAP2P55001 183 aa9.14□□□□□ -0.95
VRK3-223ENST00000601341 BLCAPP62952 87 aa9.14□□□□□ -0.95
VRK3-223ENST00000601341 C1orf194Q5T5A4 169 aa9.14□□□□□ -0.95
VRK3-223ENST00000601341 MRPL52Q86TS9 123 aaKnown RBP9.14□□□□□ -0.95
VRK3-223ENST00000601341 GRAMD2BQ96HH9 432 aa9.14□□□□□ -0.95
VRK3-223ENST00000601341 FMC1Q96HJ9 113 aa9.14□□□□□ -0.95
VRK3-223ENST00000601341 RNASE7Q9H1E1 156 aaKnown RBP9.14□□□□□ -0.95
VRK3-223ENST00000601341 NAT8BQ9UHF3 227 aa9.14□□□□□ -0.95
VRK3-223ENST00000601341 NAGKQ9UJ70 344 aa9.14□□□□□ -0.95
VRK3-223ENST00000601341 TP53TG3Q9ULZ0 132 aa9.14□□□□□ -0.95
VRK3-223ENST00000601341 HIVEP2P31629 2446 aa9.14□□□□□ -0.95
VRK3-223ENST00000601341 ZNF705GA8MUZ8 300 aaPredicted RBP9.14□□□□□ -0.95
VRK3-223ENST00000601341 NBEAP1P0C6P0 100 aa9.14□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms