RNA–Protein interactions for RNA: ENST00000600689.1

UPF1-210, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 2

Gene UPF1, Length 3,084 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-210ENST00000600689 C5orf17Q8NAS9 161 aa14.66□□□□□ -0.06
UPF1-210ENST00000600689 MLST8Q9BVC4 326 aa14.66□□□□□ -0.06
UPF1-210ENST00000600689 MBD3L4A6NDZ8 208 aaPredicted RBP14.65□□□□□ -0.06
UPF1-210ENST00000600689 MBD3L3A6NE82 208 aaPredicted RBP14.65□□□□□ -0.06
UPF1-210ENST00000600689 MBD3L5A6NJ08 208 aaPredicted RBP14.65□□□□□ -0.06
UPF1-210ENST00000600689 RBP4P02753 201 aa14.65□□□□□ -0.06
UPF1-210ENST00000600689 IFI27P40305 119 aaPredicted RBP14.65□□□□□ -0.06
UPF1-210ENST00000600689 IGF2-ASQ6U949 168 aa14.65□□□□□ -0.06
UPF1-210ENST00000600689 MBD3L2Q8NHZ7 208 aaPredicted RBP14.65□□□□□ -0.06
UPF1-210ENST00000600689 CCL17Q92583 94 aa14.65□□□□□ -0.06
UPF1-210ENST00000600689 THYN1Q9P016 225 aa14.65□□□□□ -0.06
UPF1-210ENST00000600689 PEF1Q9UBV8 284 aaKnown RBP14.65□□□□□ -0.06
UPF1-210ENST00000600689 K7ERU9 68 aa14.65□□□□□ -0.06
UPF1-210ENST00000600689 CRXO43186 299 aaPredicted RBP14.65□□□□□ -0.06
UPF1-210ENST00000600689 CD5LO43866 347 aa14.65□□□□□ -0.06
UPF1-210ENST00000600689 NEU4Q8WWR8 484 aaPredicted RBP14.65□□□□□ -0.06
UPF1-210ENST00000600689 DSCAML1Q8TD84 2053 aa14.65□□□□□ -0.06
UPF1-210ENST00000600689 CEP295Q9C0D2 2601 aa14.65□□□□□ -0.06
UPF1-210ENST00000600689 MYCNOSP40205 109 aa14.64□□□□□ -0.07
UPF1-210ENST00000600689 TMEM97Q5BJF2 176 aa14.64□□□□□ -0.07
UPF1-210ENST00000600689 FAM162BQ5T6X4 162 aa14.64□□□□□ -0.07
UPF1-210ENST00000600689 C2orf91Q6ZV80 131 aa14.64□□□□□ -0.07
UPF1-210ENST00000600689 WNK2Q9Y3S1 2297 aa14.64□□□□□ -0.07
UPF1-210ENST00000600689 APC2O95996 2303 aa14.64□□□□□ -0.07
UPF1-210ENST00000600689 PPBPP02775 128 aa14.64□□□□□ -0.07
UPF1-210ENST00000600689 NMUP48645 174 aa14.64□□□□□ -0.07
UPF1-210ENST00000600689 FAM27E3Q08E93 113 aa14.64□□□□□ -0.07
UPF1-210ENST00000600689 PET117Q6UWS5 81 aa14.64□□□□□ -0.07
UPF1-210ENST00000600689 OR4C13Q8NGP0 309 aa14.64□□□□□ -0.07
UPF1-210ENST00000600689 IGFBPL1Q8WX77 278 aa14.64□□□□□ -0.07
UPF1-210ENST00000600689 FBLL1A6NHQ2 334 aaKnown RBP14.64□□□□□ -0.07
UPF1-210ENST00000600689 ZNF788Q6ZQV5 615 aa14.64□□□□□ -0.07
UPF1-210ENST00000600689 PRSS22Q9GZN4 317 aa14.64□□□□□ -0.07
UPF1-210ENST00000600689 C19orf71A6NCJ1 209 aa14.63□□□□□ -0.07
UPF1-210ENST00000600689 GOSR1O95249 250 aa14.63□□□□□ -0.07
UPF1-210ENST00000600689 JMJD8Q96S16 334 aa14.63□□□□□ -0.07
UPF1-210ENST00000600689 RAI1Q7Z5J4 1906 aaPredicted RBP14.63□□□□□ -0.07
UPF1-210ENST00000600689 LTAP01374 205 aa14.63□□□□□ -0.07
UPF1-210ENST00000600689 RABAC1Q9UI14 185 aa14.63□□□□□ -0.07
UPF1-210ENST00000600689 CACNA1BQ00975 2339 aa14.63□□□□□ -0.07
UPF1-210ENST00000600689 M0R3E3 92 aa14.62□□□□□ -0.07
UPF1-210ENST00000600689 TNFRSF1AP19438 455 aa14.62□□□□□ -0.07
UPF1-210ENST00000600689 GLRXP35754 106 aa14.62□□□□□ -0.07
UPF1-210ENST00000600689 CACNG7P62955 275 aa14.62□□□□□ -0.07
UPF1-210ENST00000600689 Q6ZS92 163 aa14.62□□□□□ -0.07
UPF1-210ENST00000600689 Q86TA4 180 aa14.62□□□□□ -0.07
UPF1-210ENST00000600689 SMKR1H3BMG3 65 aa14.62□□□□□ -0.07
UPF1-210ENST00000600689 K7EMI3 77 aa14.62□□□□□ -0.07
UPF1-210ENST00000600689 TMEM200BQ69YZ2 307 aa14.62□□□□□ -0.07
UPF1-210ENST00000600689 ZNF833PQ6ZTB9 187 aa14.62□□□□□ -0.07
UPF1-210ENST00000600689 FAM222BQ8WU58 562 aa14.62□□□□□ -0.07
UPF1-210ENST00000600689 FMC1Q96HJ9 113 aa14.62□□□□□ -0.07
UPF1-210ENST00000600689 CSTL1Q9H114 145 aa14.62□□□□□ -0.07
UPF1-210ENST00000600689 A0A1B0GUT8 65 aa14.62□□□□□ -0.07
UPF1-210ENST00000600689 IGFL3Q6UXB1 125 aa14.62□□□□□ -0.07
UPF1-210ENST00000600689 LYPD2Q6UXB3 125 aa14.62□□□□□ -0.07
UPF1-210ENST00000600689 C18orf15Q96N68 181 aa14.62□□□□□ -0.07
UPF1-210ENST00000600689 ZNF747Q9BV97 191 aa14.62□□□□□ -0.07
UPF1-210ENST00000600689 TMEM213A2RRL7 107 aa14.61□□□□□ -0.07
UPF1-210ENST00000600689 ZGRF1Q86YA3 2104 aa14.61□□□□□ -0.07
UPF1-210ENST00000600689 COX8AP10176 69 aa14.61□□□□□ -0.07
UPF1-210ENST00000600689 GP9P14770 177 aa14.61□□□□□ -0.07
UPF1-210ENST00000600689 TMEM167AQ8TBQ9 72 aa14.61□□□□□ -0.07
UPF1-210ENST00000600689 IGLC1P0CG04 106 aa14.6□□□□□ -0.07
UPF1-210ENST00000600689 OR5AN1Q8NGI8 311 aa14.6□□□□□ -0.07
UPF1-210ENST00000600689 NDFIP1Q9BT67 221 aa14.6□□□□□ -0.07
UPF1-210ENST00000600689 TTTY13Q9BZ97 58 aa14.6□□□□□ -0.07
UPF1-210ENST00000600689 SH3BGRL2Q9UJC5 107 aa14.6□□□□□ -0.07
UPF1-210ENST00000600689 KLF12Q9Y4X4 402 aa14.6□□□□□ -0.07
UPF1-210ENST00000600689 MED13LQ71F56 2210 aa14.6□□□□□ -0.07
UPF1-210ENST00000600689 ZZEF1O43149 2961 aa14.6□□□□□ -0.07
UPF1-210ENST00000600689 STXBP6Q8NFX7 210 aa14.6□□□□□ -0.07
UPF1-210ENST00000600689 SPOCK3Q9BQ16 436 aa14.6□□□□□ -0.07
UPF1-210ENST00000600689 HIGD1AQ9Y241 93 aa14.6□□□□□ -0.07
UPF1-210ENST00000600689 D6R8Y8 96 aa14.6□□□□□ -0.07
UPF1-210ENST00000600689 VMA21Q3ZAQ7 101 aa14.6□□□□□ -0.07
UPF1-210ENST00000600689 LINC01545Q5VT33 79 aa14.6□□□□□ -0.07
UPF1-210ENST00000600689 FER1L6-AS1Q8NA97 138 aa14.6□□□□□ -0.07
UPF1-210ENST00000600689 FCN3O75636 299 aa14.59□□□□□ -0.07
UPF1-210ENST00000600689 CSN1S1P47710 185 aa14.59□□□□□ -0.07
UPF1-210ENST00000600689 AMN1Q8IY45 258 aa14.59□□□□□ -0.07
UPF1-210ENST00000600689 OR10AG1Q8NH19 301 aa14.59□□□□□ -0.07
UPF1-210ENST00000600689 FAM71F2Q6NXP2 309 aa14.59□□□□□ -0.07
UPF1-210ENST00000600689 PCP2Q8IVA1 136 aa14.59□□□□□ -0.07
UPF1-210ENST00000600689 VSTM2AQ8TAG5 236 aa14.59□□□□□ -0.07
UPF1-210ENST00000600689 LINC00312Q9Y6C7 94 aa14.59□□□□□ -0.07
UPF1-210ENST00000600689 IGLV2-23P01705 113 aa14.58□□□□□ -0.07
UPF1-210ENST00000600689 KIR3DS1Q14943 382 aa14.58□□□□□ -0.07
UPF1-210ENST00000600689 C1orf185Q5T7R7 199 aa14.58□□□□□ -0.07
UPF1-210ENST00000600689 THAP8Q8NA92 274 aa14.58□□□□□ -0.07
UPF1-210ENST00000600689 MALRD1Q5VYJ5 2156 aa14.58□□□□□ -0.08
UPF1-210ENST00000600689 RPL27AP46776 148 aaKnown RBP14.58□□□□□ -0.08
UPF1-210ENST00000600689 ATP5IP56385 69 aaPredicted RBP14.58□□□□□ -0.08
UPF1-210ENST00000600689 TIMM23BQ5SRD1 257 aa14.58□□□□□ -0.08
UPF1-210ENST00000600689 C8orf49Q96NF6 230 aa14.58□□□□□ -0.08
UPF1-210ENST00000600689 RPL24P83731 157 aaKnown RBP14.57□□□□□ -0.08
UPF1-210ENST00000600689 MS4A6AQ9H2W1 248 aa14.57□□□□□ -0.08
UPF1-210ENST00000600689 ZNF207O43670 478 aaKnown RBP14.57□□□□□ -0.08
UPF1-210ENST00000600689 PLGLAQ15195 96 aa14.57□□□□□ -0.08
UPF1-210ENST00000600689 RIGQ13278 110 aa14.56□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms