RNA–Protein interactions for RNA: ENST00000598201.5

SHKBP1-216, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 2,069 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-216ENST00000598201 C5orf52A6NGY3 159 aa13.28□□□□□ -0.28
SHKBP1-216ENST00000598201 GGCTO75223 188 aaKnown RBP13.28□□□□□ -0.28
SHKBP1-216ENST00000598201 HIST1H1BP16401 226 aaKnown RBP13.28□□□□□ -0.28
SHKBP1-216ENST00000598201 ADMP35318 185 aa13.28□□□□□ -0.28
SHKBP1-216ENST00000598201 LINC00527Q9UJ94 153 aa13.28□□□□□ -0.28
SHKBP1-216ENST00000598201 CSPG4Q6UVK1 2322 aa13.28□□□□□ -0.28
SHKBP1-216ENST00000598201 SLC17A3O00476 420 aa13.28□□□□□ -0.28
SHKBP1-216ENST00000598201 SLC25A5P05141 298 aaKnown RBP13.28□□□□□ -0.28
SHKBP1-216ENST00000598201 GATA3P23771 443 aa13.28□□□□□ -0.28
SHKBP1-216ENST00000598201 FCGR2BP31994 310 aaPredicted RBP13.28□□□□□ -0.28
SHKBP1-216ENST00000598201 ZNF502Q8TBZ5 544 aa13.28□□□□□ -0.28
SHKBP1-216ENST00000598201 VN1R17PQ8TDU5 208 aa13.28□□□□□ -0.28
SHKBP1-216ENST00000598201 ZNF414Q96IQ9 312 aa13.28□□□□□ -0.28
SHKBP1-216ENST00000598201 Q9H3A6 140 aa13.28□□□□□ -0.28
SHKBP1-216ENST00000598201 CDC42EP3Q9UKI2 254 aa13.28□□□□□ -0.28
SHKBP1-216ENST00000598201 EPDR1Q9UM22 224 aa13.28□□□□□ -0.28
SHKBP1-216ENST00000598201 A6NDX4 124 aa13.27□□□□□ -0.28
SHKBP1-216ENST00000598201 PHOX2AO14813 284 aa13.27□□□□□ -0.28
SHKBP1-216ENST00000598201 SMAD7O15105 426 aaKnown RBP13.27□□□□□ -0.28
SHKBP1-216ENST00000598201 HIST1H1EP10412 219 aaKnown RBP13.27□□□□□ -0.28
SHKBP1-216ENST00000598201 C19orf54Q5BKX5 351 aa13.27□□□□□ -0.28
SHKBP1-216ENST00000598201 NHLRC2Q8NBF2 726 aa13.27□□□□□ -0.28
SHKBP1-216ENST00000598201 MS4A10Q96PG2 267 aa13.27□□□□□ -0.28
SHKBP1-216ENST00000598201 ISLRO14498 428 aa13.27□□□□□ -0.29
SHKBP1-216ENST00000598201 CNN1P51911 297 aaKnown RBP13.27□□□□□ -0.29
SHKBP1-216ENST00000598201 TMEM68Q96MH6 324 aa13.27□□□□□ -0.29
SHKBP1-216ENST00000598201 C17orf77Q96MU5 243 aa13.27□□□□□ -0.29
SHKBP1-216ENST00000598201 TXN2Q99757 166 aa13.27□□□□□ -0.29
SHKBP1-216ENST00000598201 ZANQ9Y493 2812 aa13.26□□□□□ -0.29
SHKBP1-216ENST00000598201 UBE2CO00762 179 aa13.26□□□□□ -0.29
SHKBP1-216ENST00000598201 GPR183P32249 361 aa13.26□□□□□ -0.29
SHKBP1-216ENST00000598201 TAS2R60P59551 318 aa13.26□□□□□ -0.29
SHKBP1-216ENST00000598201 C9orf152Q5JTZ5 239 aa13.26□□□□□ -0.29
SHKBP1-216ENST00000598201 KCNIP4Q6PIL6 250 aa13.26□□□□□ -0.29
SHKBP1-216ENST00000598201 FRZBQ92765 325 aa13.26□□□□□ -0.29
SHKBP1-216ENST00000598201 SRD5A3Q9H8P0 318 aa13.26□□□□□ -0.29
SHKBP1-216ENST00000598201 RPH3ALQ9UNE2 315 aa13.26□□□□□ -0.29
SHKBP1-216ENST00000598201 FLNAP21333 2647 aaKnown RBP13.26□□□□□ -0.29
SHKBP1-216ENST00000598201 IGHV3-35A0A0C4DH35 117 aa13.25□□□□□ -0.29
SHKBP1-216ENST00000598201 MRPS12O15235 138 aaKnown RBP13.25□□□□□ -0.29
SHKBP1-216ENST00000598201 HIST1H2BKO60814 126 aa13.25□□□□□ -0.29
SHKBP1-216ENST00000598201 TGFAP01135 160 aa13.25□□□□□ -0.29
SHKBP1-216ENST00000598201 GCGP01275 180 aa13.25□□□□□ -0.29
SHKBP1-216ENST00000598201 HIST1H2BJP06899 126 aa13.25□□□□□ -0.29
SHKBP1-216ENST00000598201 HIST1H2BOP23527 126 aa13.25□□□□□ -0.29
SHKBP1-216ENST00000598201 HIST1H2BBP33778 126 aa13.25□□□□□ -0.29
SHKBP1-216ENST00000598201 HIST1H2BDP58876 126 aa13.25□□□□□ -0.29
SHKBP1-216ENST00000598201 ERVFC1-1P60608 527 aa13.25□□□□□ -0.29
SHKBP1-216ENST00000598201 HIST1H2BCP62807 126 aa13.25□□□□□ -0.29
SHKBP1-216ENST00000598201 HIST2H2BEQ16778 126 aa13.25□□□□□ -0.29
SHKBP1-216ENST00000598201 HIST2H2BFQ5QNW6 126 aaPredicted RBP13.25□□□□□ -0.29
SHKBP1-216ENST00000598201 BPIFA4PQ86YQ2 179 aa13.25□□□□□ -0.29
SHKBP1-216ENST00000598201 HIST1H2BHQ93079 126 aa13.25□□□□□ -0.29
SHKBP1-216ENST00000598201 SGK494Q96LW2 274 aa13.25□□□□□ -0.29
SHKBP1-216ENST00000598201 CCDC140Q96MF4 163 aa13.25□□□□□ -0.29
SHKBP1-216ENST00000598201 IMMP2LQ96T52 175 aa13.25□□□□□ -0.29
SHKBP1-216ENST00000598201 HIST1H2BNQ99877 126 aa13.25□□□□□ -0.29
SHKBP1-216ENST00000598201 HIST1H2BMQ99879 126 aa13.25□□□□□ -0.29
SHKBP1-216ENST00000598201 RNASE7Q9H1E1 156 aaKnown RBP13.25□□□□□ -0.29
SHKBP1-216ENST00000598201 CR1P17927 2039 aa13.25□□□□□ -0.29
SHKBP1-216ENST00000598201 TRAV41A0A0B4J266 112 aa13.25□□□□□ -0.29
SHKBP1-216ENST00000598201 IGLC2P0DOY2 106 aa13.25□□□□□ -0.29
SHKBP1-216ENST00000598201 FOXL1Q12952 345 aa13.25□□□□□ -0.29
SHKBP1-216ENST00000598201 EXOC3-AS1Q8N2X6 119 aa13.25□□□□□ -0.29
SHKBP1-216ENST00000598201 V9GYV3 84 aa13.25□□□□□ -0.29
SHKBP1-216ENST00000598201 IGHV3OR16-8A0A075B7F1 116 aa13.24□□□□□ -0.29
SHKBP1-216ENST00000598201 PPP5D1E7EU14 171 aa13.24□□□□□ -0.29
SHKBP1-216ENST00000598201 CLEC3BP05452 202 aa13.24□□□□□ -0.29
SHKBP1-216ENST00000598201 MGST1P10620 155 aaKnown RBP13.24□□□□□ -0.29
SHKBP1-216ENST00000598201 CRIP2P52943 208 aaPredicted RBP13.24□□□□□ -0.29
SHKBP1-216ENST00000598201 C5orf17Q8NAS9 161 aa13.24□□□□□ -0.29
SHKBP1-216ENST00000598201 TRBV19A0A075B6N1 114 aa13.24□□□□□ -0.29
SHKBP1-216ENST00000598201 AP4M1O00189 453 aa13.24□□□□□ -0.29
SHKBP1-216ENST00000598201 TGOLN2O43493 480 aa13.24□□□□□ -0.29
SHKBP1-216ENST00000598201 TRGC1P0CF51 173 aa13.24□□□□□ -0.29
SHKBP1-216ENST00000598201 FABP9Q0Z7S8 132 aa13.24□□□□□ -0.29
SHKBP1-216ENST00000598201 TMEM183BQ1AE95 376 aa13.24□□□□□ -0.29
SHKBP1-216ENST00000598201 Q6ZS46 218 aa13.24□□□□□ -0.29
SHKBP1-216ENST00000598201 BAGE2Q86Y30 109 aa13.24□□□□□ -0.29
SHKBP1-216ENST00000598201 MAST4O15021 2626 aa13.23□□□□□ -0.29
SHKBP1-216ENST00000598201 TYMSP04818 313 aa13.23□□□□□ -0.29
SHKBP1-216ENST00000598201 BLCAPP62952 87 aa13.23□□□□□ -0.29
SHKBP1-216ENST00000598201 ANKRD39Q53RE8 183 aa13.23□□□□□ -0.29
SHKBP1-216ENST00000598201 CLEC19AQ6UXS0 136 aa13.23□□□□□ -0.29
SHKBP1-216ENST00000598201 ATG101Q9BSB4 218 aa13.23□□□□□ -0.29
SHKBP1-216ENST00000598201 OTORQ9NRC9 128 aa13.23□□□□□ -0.29
SHKBP1-216ENST00000598201 IL36BQ9NZH7 164 aa13.23□□□□□ -0.29
SHKBP1-216ENST00000598201 KLF12Q9Y4X4 402 aa13.23□□□□□ -0.29
SHKBP1-216ENST00000598201 TCRAP04437 139 aa13.22□□□□□ -0.29
SHKBP1-216ENST00000598201 IGHV4-31P0DP07 118 aa13.22□□□□□ -0.29
SHKBP1-216ENST00000598201 OR4F17Q8NGA8 305 aa13.22□□□□□ -0.29
SHKBP1-216ENST00000598201 ZNF320A2RRD8 509 aa13.22□□□□□ -0.29
SHKBP1-216ENST00000598201 DEFB112Q30KQ8 113 aa13.22□□□□□ -0.29
SHKBP1-216ENST00000598201 NOL4LQ96MY1 436 aaPredicted RBP13.22□□□□□ -0.29
SHKBP1-216ENST00000598201 OSTCQ9NRP0 149 aa13.22□□□□□ -0.29
SHKBP1-216ENST00000598201 ACANP16112 2415 aa13.21□□□□□ -0.29
SHKBP1-216ENST00000598201 J3QLI3 93 aa13.21□□□□□ -0.29
SHKBP1-216ENST00000598201 SCGB2A1O75556 95 aa13.21□□□□□ -0.29
SHKBP1-216ENST00000598201 IGHG2P01859 326 aa13.21□□□□□ -0.29
SHKBP1-216ENST00000598201 IGF1P05019 195 aa13.21□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms