RNA–Protein interactions for RNA: ENST00000595974.5

TRIM28-206, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 665 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-206ENST00000595974 EWSR1Q01844 656 aaKnown RBP eCLIP11.82□□□□□ -0.52
TRIM28-206ENST00000595974 SPATA31B1PQ5VZV4 182 aa11.82□□□□□ -0.52
TRIM28-206ENST00000595974 TMEM252Q8N6L7 170 aa11.82□□□□□ -0.52
TRIM28-206ENST00000595974 C16orf92Q96LL3 132 aa11.82□□□□□ -0.52
TRIM28-206ENST00000595974 LINC00052Q96N35 136 aa11.82□□□□□ -0.52
TRIM28-206ENST00000595974 RSG1Q9BU20 258 aa11.82□□□□□ -0.52
TRIM28-206ENST00000595974 C1QTNF4Q9BXJ3 329 aa11.82□□□□□ -0.52
TRIM28-206ENST00000595974 NMES1Q9C002 83 aa11.82□□□□□ -0.52
TRIM28-206ENST00000595974 ARL6Q9H0F7 186 aa11.82□□□□□ -0.52
TRIM28-206ENST00000595974 UQCC1Q9NVA1 299 aa11.82□□□□□ -0.52
TRIM28-206ENST00000595974 SACSQ9NZJ4 4579 aa11.81□□□□□ -0.52
TRIM28-206ENST00000595974 IGSF23A1L1A6 192 aa11.81□□□□□ -0.52
TRIM28-206ENST00000595974 S100A11P31949 105 aa11.81□□□□□ -0.52
TRIM28-206ENST00000595974 CYCSP99999 105 aaKnown RBP11.81□□□□□ -0.52
TRIM28-206ENST00000595974 RAB31Q13636 194 aa11.81□□□□□ -0.52
TRIM28-206ENST00000595974 VWC2Q2TAL6 325 aa11.81□□□□□ -0.52
TRIM28-206ENST00000595974 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa11.81□□□□□ -0.52
TRIM28-206ENST00000595974 CLUHP3Q96NS8 147 aa11.81□□□□□ -0.52
TRIM28-206ENST00000595974 UHRF2Q96PU4 802 aa11.81□□□□□ -0.52
TRIM28-206ENST00000595974 MGST2Q99735 147 aa11.81□□□□□ -0.52
TRIM28-206ENST00000595974 ARV1Q9H2C2 271 aa11.81□□□□□ -0.52
TRIM28-206ENST00000595974 SAV1Q9H4B6 383 aaPredicted RBP11.81□□□□□ -0.52
TRIM28-206ENST00000595974 WDR83OSQ9Y284 106 aa11.81□□□□□ -0.52
TRIM28-206ENST00000595974 LCE6AA0A183 80 aa11.8□□□□□ -0.52
TRIM28-206ENST00000595974 CXorf65A6NEN9 183 aa11.8□□□□□ -0.52
TRIM28-206ENST00000595974 SIX6O95475 246 aa11.8□□□□□ -0.52
TRIM28-206ENST00000595974 RLN2P04090 185 aa11.8□□□□□ -0.52
TRIM28-206ENST00000595974 C17orf77Q96MU5 243 aa11.8□□□□□ -0.52
TRIM28-206ENST00000595974 RPRMQ9NS64 109 aa11.8□□□□□ -0.52
TRIM28-206ENST00000595974 RYR2Q92736 4967 aa11.79□□□□□ -0.52
TRIM28-206ENST00000595974 UBE2L5PA0A1B0GUS4 154 aa11.79□□□□□ -0.52
TRIM28-206ENST00000595974 NUPR2A6NF83 97 aa11.79□□□□□ -0.52
TRIM28-206ENST00000595974 ZNF705EA8MWA4 302 aaPredicted RBP11.79□□□□□ -0.52
TRIM28-206ENST00000595974 CAMLGP49069 296 aa11.79□□□□□ -0.52
TRIM28-206ENST00000595974 PMS2P11Q13670 270 aa11.79□□□□□ -0.52
TRIM28-206ENST00000595974 ATP6V1FQ16864 119 aa11.79□□□□□ -0.52
TRIM28-206ENST00000595974 GDF5OSQ5U4N7 250 aa11.79□□□□□ -0.52
TRIM28-206ENST00000595974 EBLN2Q6P2I7 272 aa11.79□□□□□ -0.52
TRIM28-206ENST00000595974 PATE2Q6UY27 113 aa11.79□□□□□ -0.52
TRIM28-206ENST00000595974 Q8NAQ8 132 aa11.79□□□□□ -0.52
TRIM28-206ENST00000595974 CSNK1G2-AS1Q8NCQ2 148 aa11.79□□□□□ -0.52
TRIM28-206ENST00000595974 ELOA3CA0A087WX78 387 aaPredicted RBP11.78□□□□□ -0.52
TRIM28-206ENST00000595974 A0A087X0K7 114 aa11.78□□□□□ -0.52
TRIM28-206ENST00000595974 E5RGE8 158 aa11.78□□□□□ -0.52
TRIM28-206ENST00000595974 SSNA1O43805 119 aa11.78□□□□□ -0.52
TRIM28-206ENST00000595974 COX7A2P2O60397 106 aa11.78□□□□□ -0.52
TRIM28-206ENST00000595974 MIFP14174 115 aa11.78□□□□□ -0.52
TRIM28-206ENST00000595974 DEFB1P60022 68 aa11.78□□□□□ -0.52
TRIM28-206ENST00000595974 CLEC5AQ9NY25 188 aa11.78□□□□□ -0.52
TRIM28-206ENST00000595974 A0A0J9YX75 114 aa11.77□□□□□ -0.53
TRIM28-206ENST00000595974 JTBO76095 146 aa11.77□□□□□ -0.53
TRIM28-206ENST00000595974 H2BFSP57053 126 aa11.77□□□□□ -0.53
TRIM28-206ENST00000595974 PRR20EP86478 221 aa11.77□□□□□ -0.53
TRIM28-206ENST00000595974 PRR20CP86479 221 aa11.77□□□□□ -0.53
TRIM28-206ENST00000595974 PRR20DP86480 221 aa11.77□□□□□ -0.53
TRIM28-206ENST00000595974 PRR20BP86481 221 aa11.77□□□□□ -0.53
TRIM28-206ENST00000595974 PRR20AP86496 221 aa11.77□□□□□ -0.53
TRIM28-206ENST00000595974 BAXQ07812 192 aa11.77□□□□□ -0.53
TRIM28-206ENST00000595974 LRRC37A5PQ49AS3 106 aa11.77□□□□□ -0.53
TRIM28-206ENST00000595974 Q6ZRG5 221 aa11.77□□□□□ -0.53
TRIM28-206ENST00000595974 LINC00305Q7Z4B0 112 aa11.77□□□□□ -0.53
TRIM28-206ENST00000595974 C20orf173Q96LM9 149 aa11.77□□□□□ -0.53
TRIM28-206ENST00000595974 MFFQ9GZY8 342 aa11.77□□□□□ -0.53
TRIM28-206ENST00000595974 SLC25A31Q9H0C2 315 aa11.77□□□□□ -0.53
TRIM28-206ENST00000595974 XCL2Q9UBD3 114 aa11.77□□□□□ -0.53
TRIM28-206ENST00000595974 MPDU1O75352 247 aa11.76□□□□□ -0.53
TRIM28-206ENST00000595974 IGKV3-20P01619 116 aa11.76□□□□□ -0.53
TRIM28-206ENST00000595974 CXCL2P19875 107 aa11.76□□□□□ -0.53
TRIM28-206ENST00000595974 RPL29P47914 159 aaKnown RBP11.76□□□□□ -0.53
TRIM28-206ENST00000595974 FGL1Q08830 312 aa11.76□□□□□ -0.53
TRIM28-206ENST00000595974 OPCMLQ14982 345 aa11.76□□□□□ -0.53
TRIM28-206ENST00000595974 C10orf113Q5VZT2 155 aa11.76□□□□□ -0.53
TRIM28-206ENST00000595974 OR4B1Q8NGF8 309 aa11.76□□□□□ -0.53
TRIM28-206ENST00000595974 CHAC2Q8WUX2 184 aa11.76□□□□□ -0.53
TRIM28-206ENST00000595974 OR5AC2Q9NZP5 309 aa11.76□□□□□ -0.53
TRIM28-206ENST00000595974 X6R8D5 127 aa11.76□□□□□ -0.53
TRIM28-206ENST00000595974 PLECQ15149 4684 aaKnown RBP11.75□□□□□ -0.53
TRIM28-206ENST00000595974 TRAV8-2A0A0B4J237 113 aa11.75□□□□□ -0.53
TRIM28-206ENST00000595974 IGHV4-28A0A0C4DH34 117 aa11.75□□□□□ -0.53
TRIM28-206ENST00000595974 A8MTW9 85 aa11.75□□□□□ -0.53
TRIM28-206ENST00000595974 F6UB75 175 aa11.75□□□□□ -0.53
TRIM28-206ENST00000595974 MRPS12O15235 138 aaKnown RBP11.75□□□□□ -0.53
TRIM28-206ENST00000595974 PTTG1O95997 202 aa11.75□□□□□ -0.53
TRIM28-206ENST00000595974 PET100P0DJ07 73 aa11.75□□□□□ -0.53
TRIM28-206ENST00000595974 FGF7P21781 194 aa11.75□□□□□ -0.53
TRIM28-206ENST00000595974 B2MP61769 119 aa11.75□□□□□ -0.53
TRIM28-206ENST00000595974 FAM78BQ5VT40 261 aa11.75□□□□□ -0.53
TRIM28-206ENST00000595974 MIC13Q5XKP0 118 aa11.75□□□□□ -0.53
TRIM28-206ENST00000595974 CEMP1Q6PRD7 247 aaPredicted RBP11.75□□□□□ -0.53
TRIM28-206ENST00000595974 BPIFA4PQ86YQ2 179 aa11.75□□□□□ -0.53
TRIM28-206ENST00000595974 ZNF709Q8N972 641 aa11.75□□□□□ -0.53
TRIM28-206ENST00000595974 OR1L4Q8NGR5 311 aa11.75□□□□□ -0.53
TRIM28-206ENST00000595974 C11orf45Q8TAV5 145 aa11.75□□□□□ -0.53
TRIM28-206ENST00000595974 PPP1R1CQ8WVI7 109 aa11.75□□□□□ -0.53
TRIM28-206ENST00000595974 TMEM37Q8WXS4 190 aa11.75□□□□□ -0.53
TRIM28-206ENST00000595974 PFDN5Q99471 154 aa11.75□□□□□ -0.53
TRIM28-206ENST00000595974 H0YIZ8 118 aa11.74□□□□□ -0.53
TRIM28-206ENST00000595974 DEFB4AO15263 64 aa11.74□□□□□ -0.53
TRIM28-206ENST00000595974 PSG9Q00887 426 aa11.74□□□□□ -0.53
TRIM28-206ENST00000595974 NHLH2Q02577 135 aa11.74□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 229.6 ms