RNA–Protein interactions for RNA: ENST00000590181.5

LIG3-212, Transcript of DNA ligase 3, humanhuman

TSL 1 (best)

Gene LIG3, Length 1,156 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-212ENST00000590181 HIGD1AQ9Y241 93 aa7.65□□□□□ -1.18
LIG3-212ENST00000590181 SMCO3A2RU48 225 aa7.64□□□□□ -1.19
LIG3-212ENST00000590181 C5orf51A6NDU8 294 aa7.64□□□□□ -1.19
LIG3-212ENST00000590181 GOSR2O14653 212 aa7.64□□□□□ -1.19
LIG3-212ENST00000590181 MPDU1O75352 247 aa7.64□□□□□ -1.19
LIG3-212ENST00000590181 RLN2P04090 185 aa7.64□□□□□ -1.19
LIG3-212ENST00000590181 GIG44P09565 113 aaPredicted RBP7.64□□□□□ -1.19
LIG3-212ENST00000590181 ORM2P19652 201 aa7.64□□□□□ -1.19
LIG3-212ENST00000590181 CXCL2P19875 107 aa7.64□□□□□ -1.19
LIG3-212ENST00000590181 DEFA1P59665 94 aa7.64□□□□□ -1.19
LIG3-212ENST00000590181 DEFA3P59666 94 aa7.64□□□□□ -1.19
LIG3-212ENST00000590181 OR2F1Q13607 317 aa7.64□□□□□ -1.19
LIG3-212ENST00000590181 ZNF124Q15973 351 aa7.64□□□□□ -1.19
LIG3-212ENST00000590181 ATP6V1FQ16864 119 aa7.64□□□□□ -1.19
LIG3-212ENST00000590181 RPP25LQ8N5L8 163 aaKnown RBP7.64□□□□□ -1.19
LIG3-212ENST00000590181 C16orf92Q96LL3 132 aa7.64□□□□□ -1.19
LIG3-212ENST00000590181 VPS13DQ5THJ4 4388 aa7.64□□□□□ -1.19
LIG3-212ENST00000590181 TRAV6A0A075B6T7 132 aa7.63□□□□□ -1.19
LIG3-212ENST00000590181 A0A087X0K7 114 aa7.63□□□□□ -1.19
LIG3-212ENST00000590181 KNCNA6PVL3 124 aa7.63□□□□□ -1.19
LIG3-212ENST00000590181 H3BP45 60 aa7.63□□□□□ -1.19
LIG3-212ENST00000590181 SOCS3O14543 225 aa7.63□□□□□ -1.19
LIG3-212ENST00000590181 UPK1BO75841 260 aa7.63□□□□□ -1.19
LIG3-212ENST00000590181 SCGB1D2O95969 90 aa7.63□□□□□ -1.19
LIG3-212ENST00000590181 METTL15P1P0C7V9 234 aa7.63□□□□□ -1.19
LIG3-212ENST00000590181 PSG9Q00887 426 aa7.63□□□□□ -1.19
LIG3-212ENST00000590181 Q6ZRG5 221 aa7.63□□□□□ -1.19
LIG3-212ENST00000590181 STX12Q86Y82 276 aa7.63□□□□□ -1.19
LIG3-212ENST00000590181 Q8NAQ8 132 aa7.63□□□□□ -1.19
LIG3-212ENST00000590181 ENKURQ8TC29 256 aa7.63□□□□□ -1.19
LIG3-212ENST00000590181 PHLDA1Q8WV24 401 aaPredicted RBP7.63□□□□□ -1.19
LIG3-212ENST00000590181 LINC00052Q96N35 136 aa7.63□□□□□ -1.19
LIG3-212ENST00000590181 RSG1Q9BU20 258 aa7.63□□□□□ -1.19
LIG3-212ENST00000590181 SLC25A39Q9BZJ4 359 aaPredicted RBP7.63□□□□□ -1.19
LIG3-212ENST00000590181 RCL1Q9Y2P8 373 aaKnown RBP7.63□□□□□ -1.19
LIG3-212ENST00000590181 PKHD1P08F94 4074 aa7.62□□□□□ -1.19
LIG3-212ENST00000590181 A8MTW9 85 aa7.62□□□□□ -1.19
LIG3-212ENST00000590181 H3BRN7 92 aa7.62□□□□□ -1.19
LIG3-212ENST00000590181 LINC00869P0C866 280 aa7.62□□□□□ -1.19
LIG3-212ENST00000590181 SULT1A1P50225 295 aa7.62□□□□□ -1.19
LIG3-212ENST00000590181 GUK1Q16774 197 aa7.62□□□□□ -1.19
LIG3-212ENST00000590181 ZNF705AQ6ZN79 300 aaPredicted RBP7.62□□□□□ -1.19
LIG3-212ENST00000590181 BPIFA4PQ86YQ2 179 aa7.62□□□□□ -1.19
LIG3-212ENST00000590181 C2CD4CQ8TF44 421 aa7.62□□□□□ -1.19
LIG3-212ENST00000590181 PFDN5Q99471 154 aa7.62□□□□□ -1.19
LIG3-212ENST00000590181 SLC25A22Q9H936 323 aa7.62□□□□□ -1.19
LIG3-212ENST00000590181 LYRM2Q9NU23 88 aaPredicted RBP7.62□□□□□ -1.19
LIG3-212ENST00000590181 DOK5Q9P104 306 aa7.62□□□□□ -1.19
LIG3-212ENST00000590181 A0A0J9YX75 114 aa7.61□□□□□ -1.19
LIG3-212ENST00000590181 FAM25EA8MYX2 175 aa7.61□□□□□ -1.19
LIG3-212ENST00000590181 AGPAT2O15120 278 aa7.61□□□□□ -1.19
LIG3-212ENST00000590181 OR5G3P0C626 314 aa7.61□□□□□ -1.19
LIG3-212ENST00000590181 BCAP31P51572 246 aa7.61□□□□□ -1.19
LIG3-212ENST00000590181 CAV2P51636 162 aa7.61□□□□□ -1.19
LIG3-212ENST00000590181 IL15RAQ13261 267 aa7.61□□□□□ -1.19
LIG3-212ENST00000590181 VWC2Q2TAL6 325 aa7.61□□□□□ -1.19
LIG3-212ENST00000590181 LGALS9CQ6DKI2 356 aa7.61□□□□□ -1.19
LIG3-212ENST00000590181 LCN15Q6UWW0 184 aa7.61□□□□□ -1.19
LIG3-212ENST00000590181 OR1L4Q8NGR5 311 aa7.61□□□□□ -1.19
LIG3-212ENST00000590181 FAM210BQ96KR6 192 aa7.61□□□□□ -1.19
LIG3-212ENST00000590181 SLC50A1Q9BRV3 221 aa7.61□□□□□ -1.19
LIG3-212ENST00000590181 NMES1Q9C002 83 aa7.61□□□□□ -1.19
LIG3-212ENST00000590181 SLC25A31Q9H0C2 315 aa7.61□□□□□ -1.19
LIG3-212ENST00000590181 SLC25A32Q9H2D1 315 aa7.61□□□□□ -1.19
LIG3-212ENST00000590181 DNAJC4Q9NNZ3 241 aa7.61□□□□□ -1.19
LIG3-212ENST00000590181 UQCC1Q9NVA1 299 aa7.61□□□□□ -1.19
LIG3-212ENST00000590181 GOLT1BQ9Y3E0 138 aa7.61□□□□□ -1.19
LIG3-212ENST00000590181 RFNGQ9Y644 331 aa7.61□□□□□ -1.19
LIG3-212ENST00000590181 TRAV10A0A0B4J240 114 aa7.6□□□□□ -1.19
LIG3-212ENST00000590181 ZNF705FA8MVS1 300 aaPredicted RBP7.6□□□□□ -1.19
LIG3-212ENST00000590181 ZNF705DP0CH99 300 aaPredicted RBP7.6□□□□□ -1.19
LIG3-212ENST00000590181 ZNF705BP0CI00 300 aaPredicted RBP7.6□□□□□ -1.19
LIG3-212ENST00000590181 PET100P0DJ07 73 aa7.6□□□□□ -1.19
LIG3-212ENST00000590181 RPL29P47914 159 aaKnown RBP7.6□□□□□ -1.19
LIG3-212ENST00000590181 SLC38A11Q08AI6 406 aa7.6□□□□□ -1.19
LIG3-212ENST00000590181 OXA1LQ15070 435 aa7.6□□□□□ -1.19
LIG3-212ENST00000590181 LRRC20Q8TCA0 184 aa7.6□□□□□ -1.19
LIG3-212ENST00000590181 MARVELD1Q9BSK0 173 aa7.6□□□□□ -1.19
LIG3-212ENST00000590181 ARL6Q9H0F7 186 aa7.6□□□□□ -1.19
LIG3-212ENST00000590181 ARV1Q9H2C2 271 aa7.6□□□□□ -1.19
LIG3-212ENST00000590181 KCNIP2Q9NS61 270 aa7.6□□□□□ -1.19
LIG3-212ENST00000590181 XCL2Q9UBD3 114 aa7.6□□□□□ -1.19
LIG3-212ENST00000590181 LSM5Q9Y4Y9 91 aaKnown RBP7.6□□□□□ -1.19
LIG3-212ENST00000590181 PXMP4Q9Y6I8 212 aa7.6□□□□□ -1.19
LIG3-212ENST00000590181 X6R8D5 127 aa7.6□□□□□ -1.19
LIG3-212ENST00000590181 IGHV4-28A0A0C4DH34 117 aa7.59□□□□□ -1.19
LIG3-212ENST00000590181 E5RGE8 158 aa7.59□□□□□ -1.19
LIG3-212ENST00000590181 COX7A2P2O60397 106 aa7.59□□□□□ -1.19
LIG3-212ENST00000590181 ZNF253O75346 499 aa7.59□□□□□ -1.19
LIG3-212ENST00000590181 SPART-AS1P0CW21 52 aa7.59□□□□□ -1.19
LIG3-212ENST00000590181 C4BPBP20851 252 aa7.59□□□□□ -1.19
LIG3-212ENST00000590181 GATA2P23769 480 aaPredicted RBP7.59□□□□□ -1.19
LIG3-212ENST00000590181 CAMLGP49069 296 aa7.59□□□□□ -1.19
LIG3-212ENST00000590181 RRAS2P62070 204 aaPredicted RBP7.59□□□□□ -1.19
LIG3-212ENST00000590181 EWSR1Q01844 656 aaKnown RBP eCLIP7.59□□□□□ -1.19
LIG3-212ENST00000590181 BAXQ07812 192 aa7.59□□□□□ -1.19
LIG3-212ENST00000590181 FAM78BQ5VT40 261 aa7.59□□□□□ -1.19
LIG3-212ENST00000590181 C10orf113Q5VZT2 155 aa7.59□□□□□ -1.19
LIG3-212ENST00000590181 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa7.59□□□□□ -1.19
LIG3-212ENST00000590181 LINC00305Q7Z4B0 112 aa7.59□□□□□ -1.19
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms