RNA–Protein interactions for RNA: ENST00000572750.1

CHD3-215, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 3

Gene CHD3, Length 750 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-215ENST00000572750 TM2D3Q9BRN9 247 aa11.7□□□□□ -0.54
CHD3-215ENST00000572750 NPCDR1Q9BY65 106 aa11.7□□□□□ -0.54
CHD3-215ENST00000572750 ARV1Q9H2C2 271 aa11.7□□□□□ -0.54
CHD3-215ENST00000572750 RETNQ9HD89 108 aa11.7□□□□□ -0.54
CHD3-215ENST00000572750 HERC2O95714 4834 aa11.7□□□□□ -0.54
CHD3-215ENST00000572750 RYR1P21817 5038 aa11.69□□□□□ -0.54
CHD3-215ENST00000572750 LOC102724200A0A096LPH7 203 aaPredicted RBP11.69□□□□□ -0.54
CHD3-215ENST00000572750 RPL35AP18077 110 aaKnown RBP11.69□□□□□ -0.54
CHD3-215ENST00000572750 PSMG4Q5JS54 123 aa11.69□□□□□ -0.54
CHD3-215ENST00000572750 PXMP4Q9Y6I8 212 aa11.69□□□□□ -0.54
CHD3-215ENST00000572750 GALR1P47211 349 aa11.68□□□□□ -0.54
CHD3-215ENST00000572750 CMC4P56277 68 aaPredicted RBP11.68□□□□□ -0.54
CHD3-215ENST00000572750 B2MP61769 119 aa11.68□□□□□ -0.54
CHD3-215ENST00000572750 PXDC1Q5TGL8 231 aa11.68□□□□□ -0.54
CHD3-215ENST00000572750 MORN5Q5VZ52 161 aa11.68□□□□□ -0.54
CHD3-215ENST00000572750 LINC00305Q7Z4B0 112 aa11.68□□□□□ -0.54
CHD3-215ENST00000572750 ASB13Q8WXK3 278 aa11.68□□□□□ -0.54
CHD3-215ENST00000572750 TMEM37Q8WXS4 190 aa11.68□□□□□ -0.54
CHD3-215ENST00000572750 RCHY1Q96PM5 261 aa11.68□□□□□ -0.54
CHD3-215ENST00000572750 WDR61Q9GZS3 305 aaKnown RBP11.68□□□□□ -0.54
CHD3-215ENST00000572750 SLC39A9Q9NUM3 307 aa11.68□□□□□ -0.54
CHD3-215ENST00000572750 U3KQK5 164 aa11.68□□□□□ -0.54
CHD3-215ENST00000572750 SOCS3O14543 225 aa11.67□□□□□ -0.54
CHD3-215ENST00000572750 MPDU1O75352 247 aa11.67□□□□□ -0.54
CHD3-215ENST00000572750 S100A7P31151 101 aa11.67□□□□□ -0.54
CHD3-215ENST00000572750 RPL29P47914 159 aaKnown RBP11.67□□□□□ -0.54
CHD3-215ENST00000572750 C10orf113Q5VZT2 155 aa11.67□□□□□ -0.54
CHD3-215ENST00000572750 OR2T35Q8NGX2 323 aa11.67□□□□□ -0.54
CHD3-215ENST00000572750 C17orf77Q96MU5 243 aa11.67□□□□□ -0.54
CHD3-215ENST00000572750 SPATA25Q9BR10 227 aa11.67□□□□□ -0.54
CHD3-215ENST00000572750 ZMAT4Q9H898 229 aa11.67□□□□□ -0.54
CHD3-215ENST00000572750 KNCNA6PVL3 124 aa11.66□□□□□ -0.54
CHD3-215ENST00000572750 SNRPD3P62318 126 aaKnown RBP11.66□□□□□ -0.54
CHD3-215ENST00000572750 FGL1Q08830 312 aa11.66□□□□□ -0.54
CHD3-215ENST00000572750 GCSAMLQ5JQS6 135 aa11.66□□□□□ -0.54
CHD3-215ENST00000572750 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa11.66□□□□□ -0.54
CHD3-215ENST00000572750 Q6ZRG5 221 aa11.66□□□□□ -0.54
CHD3-215ENST00000572750 CHAC2Q8WUX2 184 aa11.66□□□□□ -0.54
CHD3-215ENST00000572750 GPR82Q96P67 336 aa11.66□□□□□ -0.54
CHD3-215ENST00000572750 RSG1Q9BU20 258 aa11.66□□□□□ -0.54
CHD3-215ENST00000572750 WFDC1Q9HC57 220 aa11.66□□□□□ -0.54
CHD3-215ENST00000572750 AGRNO00468 2067 aa11.65□□□□□ -0.54
CHD3-215ENST00000572750 ELOA3CA0A087WX78 387 aaPredicted RBP11.65□□□□□ -0.54
CHD3-215ENST00000572750 FXYD6-FXYD2A0A087WZ82 144 aa11.65□□□□□ -0.54
CHD3-215ENST00000572750 G3V3Q6 166 aa11.65□□□□□ -0.54
CHD3-215ENST00000572750 RPL7P18124 248 aaKnown RBP11.65□□□□□ -0.54
CHD3-215ENST00000572750 ATF4P18848 351 aaPredicted RBP11.65□□□□□ -0.54
CHD3-215ENST00000572750 PSMB3P49720 205 aa11.65□□□□□ -0.54
CHD3-215ENST00000572750 APOC4P55056 127 aa11.65□□□□□ -0.54
CHD3-215ENST00000572750 DEFB1P60022 68 aa11.65□□□□□ -0.54
CHD3-215ENST00000572750 S100A7AQ86SG5 101 aa11.65□□□□□ -0.54
CHD3-215ENST00000572750 OR1L4Q8NGR5 311 aa11.65□□□□□ -0.54
CHD3-215ENST00000572750 AQP10Q96PS8 301 aa11.65□□□□□ -0.54
CHD3-215ENST00000572750 SMLR1H3BR10 107 aa11.64□□□□□ -0.55
CHD3-215ENST00000572750 ACTL10Q5JWF8 245 aa11.64□□□□□ -0.55
CHD3-215ENST00000572750 STHQ8IWL8 128 aa11.64□□□□□ -0.55
CHD3-215ENST00000572750 ZNF709Q8N972 641 aa11.64□□□□□ -0.55
CHD3-215ENST00000572750 LINC00052Q96N35 136 aa11.64□□□□□ -0.55
CHD3-215ENST00000572750 PFDN5Q99471 154 aa11.64□□□□□ -0.55
CHD3-215ENST00000572750 DNAJC4Q9NNZ3 241 aa11.64□□□□□ -0.55
CHD3-215ENST00000572750 STARD9Q9P2P6 4700 aa11.63□□□□□ -0.55
CHD3-215ENST00000572750 TRAV5A0A0B4J249 113 aa11.63□□□□□ -0.55
CHD3-215ENST00000572750 ISLRO14498 428 aa11.63□□□□□ -0.55
CHD3-215ENST00000572750 MRPS12O15235 138 aaKnown RBP11.63□□□□□ -0.55
CHD3-215ENST00000572750 IFNA5P01569 189 aa11.63□□□□□ -0.55
CHD3-215ENST00000572750 SNRPCP09234 159 aaKnown RBP11.63□□□□□ -0.55
CHD3-215ENST00000572750 ID1P41134 155 aa11.63□□□□□ -0.55
CHD3-215ENST00000572750 MEOX2P50222 304 aa11.63□□□□□ -0.55
CHD3-215ENST00000572750 DEFB135Q30KP9 77 aa11.63□□□□□ -0.55
CHD3-215ENST00000572750 IGFL4Q6B9Z1 124 aa11.63□□□□□ -0.55
CHD3-215ENST00000572750 C16orf92Q96LL3 132 aa11.63□□□□□ -0.55
CHD3-215ENST00000572750 C20orf173Q96LM9 149 aa11.63□□□□□ -0.55
CHD3-215ENST00000572750 SEPSECSQ9HD40 501 aaKnown RBP11.63□□□□□ -0.55
CHD3-215ENST00000572750 KCNIP2Q9NS61 270 aa11.63□□□□□ -0.55
CHD3-215ENST00000572750 KIR2DL5BA0A0G2JN68 375 aa11.62□□□□□ -0.55
CHD3-215ENST00000572750 KIR2DL5BA0A0G2JPC4 375 aa11.62□□□□□ -0.55
CHD3-215ENST00000572750 RNF222A6NCQ9 220 aa11.62□□□□□ -0.55
CHD3-215ENST00000572750 GDF5OSQ5U4N7 250 aa11.62□□□□□ -0.55
CHD3-215ENST00000572750 SAMD13Q5VXD3 122 aa11.62□□□□□ -0.55
CHD3-215ENST00000572750 TRPT1Q86TN4 253 aaKnown RBP11.62□□□□□ -0.55
CHD3-215ENST00000572750 KIR2DL5AQ8N109 375 aa11.62□□□□□ -0.55
CHD3-215ENST00000572750 KIR2DL5BQ8NHK3 375 aa11.62□□□□□ -0.55
CHD3-215ENST00000572750 SCGB1C1Q8TD33 95 aa11.62□□□□□ -0.55
CHD3-215ENST00000572750 TNFSF18Q9UNG2 199 aa11.62□□□□□ -0.55
CHD3-215ENST00000572750 A0A087X0K7 114 aa11.61□□□□□ -0.55
CHD3-215ENST00000572750 TRAV8-2A0A0B4J237 113 aa11.61□□□□□ -0.55
CHD3-215ENST00000572750 C17orf112F2Z3M2 114 aa11.61□□□□□ -0.55
CHD3-215ENST00000572750 H3BTX0 84 aa11.61□□□□□ -0.55
CHD3-215ENST00000572750 CA1P00915 261 aaPredicted RBP11.61□□□□□ -0.55
CHD3-215ENST00000572750 SPATA31B1PQ5VZV4 182 aa11.61□□□□□ -0.55
CHD3-215ENST00000572750 BPIFA4PQ86YQ2 179 aa11.61□□□□□ -0.55
CHD3-215ENST00000572750 RNF182Q8N6D2 247 aa11.61□□□□□ -0.55
CHD3-215ENST00000572750 INO80EQ8NBZ0 244 aaPredicted RBP11.61□□□□□ -0.55
CHD3-215ENST00000572750 RNF24Q9Y225 148 aa11.61□□□□□ -0.55
CHD3-215ENST00000572750 RFNGQ9Y644 331 aa11.61□□□□□ -0.55
CHD3-215ENST00000572750 FRAS1Q86XX4 4008 aa11.61□□□□□ -0.55
CHD3-215ENST00000572750 C4BPBP20851 252 aa11.6□□□□□ -0.55
CHD3-215ENST00000572750 FFAR4Q5NUL3 377 aa11.6□□□□□ -0.55
CHD3-215ENST00000572750 FAM78BQ5VT40 261 aa11.6□□□□□ -0.55
CHD3-215ENST00000572750 GATAD1Q8WUU5 269 aa11.6□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 51.7 ms