RNA–Protein interactions for RNA: ENST00000568454.5

TSC2-222, Transcript of TSC complex subunit 2, human

APPRIS ALT2 TSL 2 BASIC

Gene TSC2, Length 5,434 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TSC2-222	ENST00000568454	RALGAPA2	Q2PPJ7	1873 aa		13.56	□□□□□ -0.24
TSC2-222	ENST00000568454	IGHV1-3	A0A0C4DH29	117 aa		13.55	□□□□□ -0.24
TSC2-222	ENST00000568454	C1orf122	Q6ZSJ8	110 aa		13.55	□□□□□ -0.24
TSC2-222	ENST00000568454	ZNF48	Q96MX3	618 aa	Predicted RBP	13.55	□□□□□ -0.24
TSC2-222	ENST00000568454	SPANXD	Q9BXN6	97 aa		13.55	□□□□□ -0.24
TSC2-222	ENST00000568454	RNASE2	P10153	161 aa	Known RBP	13.55	□□□□□ -0.24
TSC2-222	ENST00000568454	RSPO3	Q9BXY4	272 aa	Predicted RBP	13.55	□□□□□ -0.24
TSC2-222	ENST00000568454	CEP290	O15078	2479 aa		13.55	□□□□□ -0.24
TSC2-222	ENST00000568454	LEPROT	O15243	131 aa		13.55	□□□□□ -0.24
TSC2-222	ENST00000568454	C9orf153	Q5TBE3	101 aa		13.55	□□□□□ -0.24
TSC2-222	ENST00000568454		Q8TAT8	98 aa		13.55	□□□□□ -0.24
TSC2-222	ENST00000568454	TIMM21	Q9BVV7	248 aa		13.55	□□□□□ -0.24
TSC2-222	ENST00000568454	ZNF688	P0C7X2	276 aa		13.55	□□□□□ -0.24
TSC2-222	ENST00000568454	YPEL3	P61236	119 aa	Predicted RBP	13.55	□□□□□ -0.24
TSC2-222	ENST00000568454	PPDPFL	Q8WWR9	84 aa		13.54	□□□□□ -0.24
TSC2-222	ENST00000568454	PLSCR4	Q9NRQ2	329 aa		13.54	□□□□□ -0.24
TSC2-222	ENST00000568454	SPRR3	Q9UBC9	169 aa		13.54	□□□□□ -0.24
TSC2-222	ENST00000568454	LAMTOR3	Q9UHA4	124 aa		13.54	□□□□□ -0.24
TSC2-222	ENST00000568454	RALGAPA1	Q6GYQ0	2036 aa		13.54	□□□□□ -0.24
TSC2-222	ENST00000568454	PINLYP	A6NC86	204 aa		13.54	□□□□□ -0.24
TSC2-222	ENST00000568454	WNT2	P09544	360 aa		13.54	□□□□□ -0.24
TSC2-222	ENST00000568454	HTN3	P15516	51 aa		13.54	□□□□□ -0.24
TSC2-222	ENST00000568454	VDAC2	P45880	294 aa	Predicted RBP	13.54	□□□□□ -0.24
TSC2-222	ENST00000568454	TMEM200B	Q69YZ2	307 aa		13.54	□□□□□ -0.24
TSC2-222	ENST00000568454	FREM3	P0C091	2139 aa		13.54	□□□□□ -0.24
TSC2-222	ENST00000568454	PLXNA1	Q9UIW2	1896 aa		13.54	□□□□□ -0.24
TSC2-222	ENST00000568454	C5orf63	A6NC05	138 aa		13.54	□□□□□ -0.24
TSC2-222	ENST00000568454	SRRM4	A7MD48	611 aa	Known RBP	13.54	□□□□□ -0.24
TSC2-222	ENST00000568454	SMKR1	H3BMG3	65 aa		13.54	□□□□□ -0.24
TSC2-222	ENST00000568454	SELL	P14151	372 aa		13.54	□□□□□ -0.24
TSC2-222	ENST00000568454	FOXG1	P55316	489 aa	Predicted RBP	13.54	□□□□□ -0.24
TSC2-222	ENST00000568454	ZNF474	Q6S9Z5	364 aa	Predicted RBP	13.54	□□□□□ -0.24
TSC2-222	ENST00000568454	RCHY1	Q96PM5	261 aa		13.54	□□□□□ -0.24
TSC2-222	ENST00000568454	BRCA1	P38398	1863 aa	Known RBP	13.54	□□□□□ -0.24
TSC2-222	ENST00000568454	RPL36A	P83881	106 aa	Known RBP	13.54	□□□□□ -0.24
TSC2-222	ENST00000568454	PDE6H	Q13956	83 aa		13.54	□□□□□ -0.24
TSC2-222	ENST00000568454	RPL36AL	Q969Q0	106 aa	Known RBP	13.54	□□□□□ -0.24
TSC2-222	ENST00000568454		F8W1H4	67 aa		13.54	□□□□□ -0.24
TSC2-222	ENST00000568454	VWC2L	B2RUY7	222 aa		13.53	□□□□□ -0.24
TSC2-222	ENST00000568454	THBD	P07204	575 aa		13.53	□□□□□ -0.24
TSC2-222	ENST00000568454		A0A1B0GUS0	222 aa		13.53	□□□□□ -0.24
TSC2-222	ENST00000568454		K7EP34	96 aa		13.53	□□□□□ -0.24
TSC2-222	ENST00000568454	DTX2	Q86UW9	622 aa		13.53	□□□□□ -0.24
TSC2-222	ENST00000568454	C14orf178	Q8N769	122 aa	Predicted RBP	13.53	□□□□□ -0.24
TSC2-222	ENST00000568454	TSSC4	Q9Y5U2	329 aa	Predicted RBP	13.53	□□□□□ -0.24
TSC2-222	ENST00000568454	RTTN	Q86VV8	2226 aa		13.53	□□□□□ -0.24
TSC2-222	ENST00000568454	TRAV40	A0A0B4J280	105 aa		13.53	□□□□□ -0.24
TSC2-222	ENST00000568454	GAGE2A	Q6NT46	116 aa		13.53	□□□□□ -0.24
TSC2-222	ENST00000568454		Q6ZWC4	215 aa		13.53	□□□□□ -0.24
TSC2-222	ENST00000568454	ZCCHC24	Q8N2G6	241 aa	Known RBP	13.53	□□□□□ -0.24
TSC2-222	ENST00000568454	LY6G5B	Q8NDX9	201 aa		13.53	□□□□□ -0.24
TSC2-222	ENST00000568454		H3BMM0	161 aa		13.53	□□□□□ -0.24
TSC2-222	ENST00000568454	ARMS2	P0C7Q2	107 aa		13.53	□□□□□ -0.24
TSC2-222	ENST00000568454	SLA	Q13239	276 aa		13.53	□□□□□ -0.24
TSC2-222	ENST00000568454	UBE2W	Q96B02	151 aa		13.53	□□□□□ -0.24
TSC2-222	ENST00000568454	MBD3L2B	A0A1B0GVZ6	204 aa	Predicted RBP	13.52	□□□□□ -0.24
TSC2-222	ENST00000568454	PRB4	P10163	310 aa	Predicted RBP	13.52	□□□□□ -0.24
TSC2-222	ENST00000568454	MESP1	Q9BRJ9	268 aa		13.52	□□□□□ -0.24
TSC2-222	ENST00000568454	LOC285556	D6RIA3	1793 aa		13.52	□□□□□ -0.24
TSC2-222	ENST00000568454		K7EP13	123 aa		13.52	□□□□□ -0.24
TSC2-222	ENST00000568454	PRADC1	Q9BSG0	188 aa		13.52	□□□□□ -0.24
TSC2-222	ENST00000568454	ANAPC10	Q9UM13	185 aa		13.52	□□□□□ -0.25
TSC2-222	ENST00000568454	ZNF415	Q09FC8	603 aa		13.52	□□□□□ -0.25
TSC2-222	ENST00000568454	MINOS1	Q5TGZ0	78 aa		13.52	□□□□□ -0.25
TSC2-222	ENST00000568454	FOXL2NB	Q6ZUU3	175 aa		13.52	□□□□□ -0.25
TSC2-222	ENST00000568454	C5orf24	Q7Z6I8	188 aa		13.52	□□□□□ -0.25
TSC2-222	ENST00000568454	METRN	Q9UJH8	293 aa		13.52	□□□□□ -0.25
TSC2-222	ENST00000568454	MINOS1-NBL1	R4GNA1	71 aa		13.52	□□□□□ -0.25
TSC2-222	ENST00000568454	CHD5	Q8TDI0	1954 aa		13.52	□□□□□ -0.25
TSC2-222	ENST00000568454	NYNRIN	Q9P2P1	1898 aa	Known RBP	13.51	□□□□□ -0.25
TSC2-222	ENST00000568454	CLPS	P04118	112 aa		13.51	□□□□□ -0.25
TSC2-222	ENST00000568454	INAFM2	P0DMQ5	153 aa		13.51	□□□□□ -0.25
TSC2-222	ENST00000568454	TRBV7-1	A0A0A6YYK4	115 aa		13.51	□□□□□ -0.25
TSC2-222	ENST00000568454		A0A0G2JMZ2	1700 aa		13.51	□□□□□ -0.25
TSC2-222	ENST00000568454	LRRC37A2	A6NM11	1700 aa		13.51	□□□□□ -0.25
TSC2-222	ENST00000568454	SRSF8	Q9BRL6	282 aa	Known RBP	13.51	□□□□□ -0.25
TSC2-222	ENST00000568454	SHANK2-AS3	Q9BTD1	123 aa		13.51	□□□□□ -0.25
TSC2-222	ENST00000568454	DOCK3	Q8IZD9	2030 aa		13.51	□□□□□ -0.25
TSC2-222	ENST00000568454	DTX1	Q86Y01	620 aa		13.51	□□□□□ -0.25
TSC2-222	ENST00000568454	COX8A	P10176	69 aa		13.5	□□□□□ -0.25
TSC2-222	ENST00000568454	TMEM75	Q8N9X5	138 aa		13.5	□□□□□ -0.25
TSC2-222	ENST00000568454	LINC00479	Q96M42	142 aa		13.5	□□□□□ -0.25
TSC2-222	ENST00000568454	CMC4	P56277	68 aa	Predicted RBP	13.5	□□□□□ -0.25
TSC2-222	ENST00000568454	C5orf64	Q2M2E5	130 aa		13.5	□□□□□ -0.25
TSC2-222	ENST00000568454	SIGLEC9	Q9Y336	463 aa		13.5	□□□□□ -0.25
TSC2-222	ENST00000568454	WFDC12	Q8WWY7	111 aa		13.5	□□□□□ -0.25
TSC2-222	ENST00000568454	ZNF581	Q9P0T4	197 aa		13.5	□□□□□ -0.25
TSC2-222	ENST00000568454	LYNX1	G3V0Z9	82 aa		13.5	□□□□□ -0.25
TSC2-222	ENST00000568454	LYNX1	P0DP58	116 aa		13.5	□□□□□ -0.25
TSC2-222	ENST00000568454	SRD5A1	P18405	259 aa		13.5	□□□□□ -0.25
TSC2-222	ENST00000568454	ZFP36L1	Q07352	338 aa	Known RBP	13.5	□□□□□ -0.25
TSC2-222	ENST00000568454	FAM104B	Q5XKR9	115 aa		13.5	□□□□□ -0.25
TSC2-222	ENST00000568454	PRSS46	E5RG02	174 aa		13.49	□□□□□ -0.25
TSC2-222	ENST00000568454	FAM231D	Q6ZW35	169 aa		13.49	□□□□□ -0.25
TSC2-222	ENST00000568454	LTBP1	Q14766	1721 aa		13.49	□□□□□ -0.25
TSC2-222	ENST00000568454	PSME4	Q14997	1843 aa		13.49	□□□□□ -0.25
TSC2-222	ENST00000568454	TMEM178B	H3BS89	294 aa		13.49	□□□□□ -0.25
TSC2-222	ENST00000568454	CFHR1	Q03591	330 aa		13.49	□□□□□ -0.25
TSC2-222	ENST00000568454	IGHV1-24	A0A0C4DH33	117 aa		13.49	□□□□□ -0.25
TSC2-222	ENST00000568454	IL18BP	O95998	194 aa		13.49	□□□□□ -0.25

Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms