RNA–Protein interactions for RNA: ENST00000568422.6

CLN3-231, Transcript of CLN3, battenin, human

TSL 5

Gene CLN3, Length 1,168 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CLN3-231	ENST00000568422	DNAH17	Q9UFH2	4485 aa		11.96	□□□□□ -0.49
CLN3-231	ENST00000568422	HOXB5	P09067	269 aa		11.96	□□□□□ -0.49
CLN3-231	ENST00000568422	MED14OS	P0DP75	135 aa		11.96	□□□□□ -0.49
CLN3-231	ENST00000568422	S100A5	P33763	92 aa		11.96	□□□□□ -0.49
CLN3-231	ENST00000568422	DAD1	P61803	113 aa		11.96	□□□□□ -0.49
CLN3-231	ENST00000568422	SOHLH1	Q5JUK2	328 aa		11.96	□□□□□ -0.49
CLN3-231	ENST00000568422	UNQ5830/PRO19650/PRO19816	Q6UY13	95 aa		11.96	□□□□□ -0.49
CLN3-231	ENST00000568422	TMEM144	Q7Z5S9	345 aa		11.96	□□□□□ -0.49
CLN3-231	ENST00000568422		V9GYH0	126 aa		11.96	□□□□□ -0.49
CLN3-231	ENST00000568422	HTN3	P15516	51 aa		11.95	□□□□□ -0.5
CLN3-231	ENST00000568422		Q6ZR54	194 aa		11.95	□□□□□ -0.5
CLN3-231	ENST00000568422	ACOT7L	Q6ZUV0	252 aa		11.95	□□□□□ -0.5
CLN3-231	ENST00000568422	S100A7A	Q86SG5	101 aa		11.95	□□□□□ -0.5
CLN3-231	ENST00000568422	C17orf77	Q96MU5	243 aa		11.95	□□□□□ -0.5
CLN3-231	ENST00000568422	PLA2G2E	Q9NZK7	142 aa		11.95	□□□□□ -0.5
CLN3-231	ENST00000568422	LYRM9	A8MSI8	78 aa		11.94	□□□□□ -0.5
CLN3-231	ENST00000568422	INS	P01308	110 aa		11.94	□□□□□ -0.5
CLN3-231	ENST00000568422	RPL7	P18124	248 aa	Known RBP	11.94	□□□□□ -0.5
CLN3-231	ENST00000568422	GATA2	P23769	480 aa	Predicted RBP	11.94	□□□□□ -0.5
CLN3-231	ENST00000568422	CNN1	P51911	297 aa	Known RBP	11.94	□□□□□ -0.5
CLN3-231	ENST00000568422	FAM3B	P58499	235 aa	Predicted RBP	11.94	□□□□□ -0.5
CLN3-231	ENST00000568422	ID3	Q02535	119 aa		11.94	□□□□□ -0.5
CLN3-231	ENST00000568422	GSG1L	Q6UXU4	331 aa		11.94	□□□□□ -0.5
CLN3-231	ENST00000568422	TMEM182	Q6ZP80	229 aa	Predicted RBP	11.94	□□□□□ -0.5
CLN3-231	ENST00000568422	C15orf53	Q8NAA6	179 aa		11.94	□□□□□ -0.5
CLN3-231	ENST00000568422	OR11H7	Q8NGC8	314 aa		11.94	□□□□□ -0.5
CLN3-231	ENST00000568422	RBM38	Q9H0Z9	239 aa	Known RBP	11.94	□□□□□ -0.5
CLN3-231	ENST00000568422	RNF24	Q9Y225	148 aa		11.94	□□□□□ -0.5
CLN3-231	ENST00000568422	NACA	E9PAV3	2078 aa		11.93	□□□□□ -0.5
CLN3-231	ENST00000568422		H3BP45	60 aa		11.93	□□□□□ -0.5
CLN3-231	ENST00000568422	IL5	P05113	134 aa		11.93	□□□□□ -0.5
CLN3-231	ENST00000568422	TSPO	P30536	169 aa		11.93	□□□□□ -0.5
CLN3-231	ENST00000568422	PLP1	P60201	277 aa		11.93	□□□□□ -0.5
CLN3-231	ENST00000568422	RAP2B	P61225	183 aa		11.93	□□□□□ -0.5
CLN3-231	ENST00000568422	SELENOT	P62341	195 aa		11.93	□□□□□ -0.5
CLN3-231	ENST00000568422	TMEM88	Q6PEY1	159 aa		11.93	□□□□□ -0.5
CLN3-231	ENST00000568422	CYP2G1P	Q6ZSU1	146 aa		11.93	□□□□□ -0.5
CLN3-231	ENST00000568422	SHANK2-AS3	Q9BTD1	123 aa		11.93	□□□□□ -0.5
CLN3-231	ENST00000568422	SLC25A39	Q9BZJ4	359 aa	Predicted RBP	11.93	□□□□□ -0.5
CLN3-231	ENST00000568422	HIGD1A	Q9Y241	93 aa		11.93	□□□□□ -0.5
CLN3-231	ENST00000568422	PKD1	P98161	4303 aa		11.92	□□□□□ -0.5
CLN3-231	ENST00000568422	IGLV2-18	A0A075B6J9	118 aa		11.92	□□□□□ -0.5
CLN3-231	ENST00000568422	TRAV8-2	A0A0B4J237	113 aa		11.92	□□□□□ -0.5
CLN3-231	ENST00000568422		H3BRN7	92 aa		11.92	□□□□□ -0.5
CLN3-231	ENST00000568422	HYPM	O75409	117 aa		11.92	□□□□□ -0.5
CLN3-231	ENST00000568422	SPINK13	Q1W4C9	94 aa		11.92	□□□□□ -0.5
CLN3-231	ENST00000568422	C9orf170	A2RU37	121 aa		11.91	□□□□□ -0.5
CLN3-231	ENST00000568422	SMCO3	A2RU48	225 aa		11.91	□□□□□ -0.5
CLN3-231	ENST00000568422		M0R2Z0	102 aa		11.91	□□□□□ -0.5
CLN3-231	ENST00000568422	CRX	O43186	299 aa	Predicted RBP	11.91	□□□□□ -0.5
CLN3-231	ENST00000568422	FGL1	Q08830	312 aa		11.91	□□□□□ -0.5
CLN3-231	ENST00000568422	CCDC190	Q86UF4	302 aa		11.91	□□□□□ -0.5
CLN3-231	ENST00000568422	TMEM256	Q8N2U0	113 aa		11.91	□□□□□ -0.5
CLN3-231	ENST00000568422	RNF182	Q8N6D2	247 aa		11.91	□□□□□ -0.5
CLN3-231	ENST00000568422	ZNF738	Q8NE65	137 aa		11.91	□□□□□ -0.5
CLN3-231	ENST00000568422	PSENEN	Q9NZ42	101 aa		11.91	□□□□□ -0.5
CLN3-231	ENST00000568422	NAP1L6	A6NFF2	107 aa		11.9	□□□□□ -0.5
CLN3-231	ENST00000568422	ZNF705G	A8MUZ8	300 aa	Predicted RBP	11.9	□□□□□ -0.5
CLN3-231	ENST00000568422	FNDC10	F2Z333	226 aa		11.9	□□□□□ -0.5
CLN3-231	ENST00000568422	BOLA2-SMG1P6	H3BVE0	249 aa		11.9	□□□□□ -0.5
CLN3-231	ENST00000568422	POLR2G	P62487	172 aa	Known RBP eCLIP	11.9	□□□□□ -0.5
CLN3-231	ENST00000568422	SPANXN2	Q5MJ10	180 aa		11.9	□□□□□ -0.5
CLN3-231	ENST00000568422	C1orf134	Q5TEV5	83 aa		11.9	□□□□□ -0.5
CLN3-231	ENST00000568422	IGFL4	Q6B9Z1	124 aa		11.9	□□□□□ -0.5
CLN3-231	ENST00000568422	SMIM8	Q96KF7	97 aa		11.9	□□□□□ -0.5
CLN3-231	ENST00000568422	NPVF	Q9HCQ7	196 aa		11.9	□□□□□ -0.5
CLN3-231	ENST00000568422		A0A087X0K7	114 aa		11.89	□□□□□ -0.51
CLN3-231	ENST00000568422		K7EPK0	472 aa		11.89	□□□□□ -0.51
CLN3-231	ENST00000568422	ADAP1	O75689	374 aa		11.89	□□□□□ -0.51
CLN3-231	ENST00000568422	OR5G3	P0C626	314 aa		11.89	□□□□□ -0.51
CLN3-231	ENST00000568422	LINC00869	P0C866	280 aa		11.89	□□□□□ -0.51
CLN3-231	ENST00000568422	PMS2P5	A8MQ11	134 aa		11.88	□□□□□ -0.51
CLN3-231	ENST00000568422	NDUFB6	O95139	128 aa		11.88	□□□□□ -0.51
CLN3-231	ENST00000568422	DEFB130B	P0DP73	79 aa		11.88	□□□□□ -0.51
CLN3-231	ENST00000568422	DEFB130A	P0DP74	79 aa		11.88	□□□□□ -0.51
CLN3-231	ENST00000568422	INPP1	P49441	399 aa		11.88	□□□□□ -0.51
CLN3-231	ENST00000568422	DLK1	P80370	383 aa		11.88	□□□□□ -0.51
CLN3-231	ENST00000568422	PXDC1	Q5TGL8	231 aa		11.88	□□□□□ -0.51
CLN3-231	ENST00000568422	BAP18	Q8IXM2	172 aa		11.88	□□□□□ -0.51
CLN3-231	ENST00000568422	OR10P1	Q8NGE3	313 aa		11.88	□□□□□ -0.51
CLN3-231	ENST00000568422	OR8A1	Q8NGG7	326 aa		11.88	□□□□□ -0.51
CLN3-231	ENST00000568422	LRRC20	Q8TCA0	184 aa		11.88	□□□□□ -0.51
CLN3-231	ENST00000568422	ATG101	Q9BSB4	218 aa		11.88	□□□□□ -0.51
CLN3-231	ENST00000568422	PPP1R14D	Q9NXH3	145 aa		11.88	□□□□□ -0.51
CLN3-231	ENST00000568422	MUC4	Q99102	2169 aa		11.88	□□□□□ -0.51
CLN3-231	ENST00000568422	CCDC160	A6NGH7	325 aa		11.87	□□□□□ -0.51
CLN3-231	ENST00000568422	SSSCA1	O60232	199 aa		11.87	□□□□□ -0.51
CLN3-231	ENST00000568422	CXCL3	P19876	107 aa		11.87	□□□□□ -0.51
CLN3-231	ENST00000568422	TAS2R30	P59541	319 aa		11.87	□□□□□ -0.51
CLN3-231	ENST00000568422	TAS2R60	P59551	318 aa		11.87	□□□□□ -0.51
CLN3-231	ENST00000568422	RHOB	P62745	196 aa		11.87	□□□□□ -0.51
CLN3-231	ENST00000568422	PSG3	Q16557	428 aa		11.87	□□□□□ -0.51
CLN3-231	ENST00000568422	TEPP	Q6URK8	271 aa		11.87	□□□□□ -0.51
CLN3-231	ENST00000568422	TMEM14EP	Q6UXP3	125 aa		11.87	□□□□□ -0.51
CLN3-231	ENST00000568422	UHRF2	Q96PU4	802 aa		11.87	□□□□□ -0.51
CLN3-231	ENST00000568422	MGAT4C	Q9UBM8	478 aa		11.87	□□□□□ -0.51
CLN3-231	ENST00000568422	PLAC8L1	A1L4L8	177 aa		11.86	□□□□□ -0.51
CLN3-231	ENST00000568422	CBY3	A6NI87	242 aa		11.86	□□□□□ -0.51
CLN3-231	ENST00000568422	TSC22D2	O75157	780 aa		11.86	□□□□□ -0.51
CLN3-231	ENST00000568422	ATP5G1	P05496	136 aa		11.86	□□□□□ -0.51

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