RNA–Protein interactions for RNA: ENST00000568357.1

VPS39-210, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 593 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-210ENST00000568357 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa10.94□□□□□ -0.66
VPS39-210ENST00000568357 TMEM252Q8N6L7 170 aa10.94□□□□□ -0.66
VPS39-210ENST00000568357 CSNK1G2-AS1Q8NCQ2 148 aa10.94□□□□□ -0.66
VPS39-210ENST00000568357 C20orf173Q96LM9 149 aa10.94□□□□□ -0.66
VPS39-210ENST00000568357 UHRF2Q96PU4 802 aa10.94□□□□□ -0.66
VPS39-210ENST00000568357 MGST2Q99735 147 aa10.94□□□□□ -0.66
VPS39-210ENST00000568357 ARL6Q9H0F7 186 aa10.94□□□□□ -0.66
VPS39-210ENST00000568357 CLEC5AQ9NY25 188 aa10.94□□□□□ -0.66
VPS39-210ENST00000568357 ISLRO14498 428 aa10.93□□□□□ -0.66
VPS39-210ENST00000568357 HLA-DRB4P13762 266 aa10.93□□□□□ -0.66
VPS39-210ENST00000568357 SULT1A1P50225 295 aa10.93□□□□□ -0.66
VPS39-210ENST00000568357 IGFL4Q6B9Z1 124 aa10.93□□□□□ -0.66
VPS39-210ENST00000568357 C16orf92Q96LL3 132 aa10.93□□□□□ -0.66
VPS39-210ENST00000568357 HLA-DRB4X5D2U9 266 aa10.93□□□□□ -0.66
VPS39-210ENST00000568357 AGRNO00468 2067 aa10.93□□□□□ -0.66
VPS39-210ENST00000568357 RYR1P21817 5038 aa10.92□□□□□ -0.66
VPS39-210ENST00000568357 F6UB75 175 aa10.92□□□□□ -0.66
VPS39-210ENST00000568357 DEFB4AO15263 64 aa10.92□□□□□ -0.66
VPS39-210ENST00000568357 ATF4P18848 351 aaPredicted RBP10.92□□□□□ -0.66
VPS39-210ENST00000568357 S100A7P31151 101 aa10.92□□□□□ -0.66
VPS39-210ENST00000568357 H2BFSP57053 126 aa10.92□□□□□ -0.66
VPS39-210ENST00000568357 VWC2Q2TAL6 325 aa10.92□□□□□ -0.66
VPS39-210ENST00000568357 TMEM41BQ5BJD5 291 aa10.92□□□□□ -0.66
VPS39-210ENST00000568357 FOXI2Q6ZQN5 318 aa10.92□□□□□ -0.66
VPS39-210ENST00000568357 ZNF546Q86UE3 836 aa10.92□□□□□ -0.66
VPS39-210ENST00000568357 GPR82Q96P67 336 aa10.92□□□□□ -0.66
VPS39-210ENST00000568357 NMES1Q9C002 83 aa10.92□□□□□ -0.66
VPS39-210ENST00000568357 ARV1Q9H2C2 271 aa10.92□□□□□ -0.66
VPS39-210ENST00000568357 SAV1Q9H4B6 383 aaPredicted RBP10.92□□□□□ -0.66
VPS39-210ENST00000568357 UQCC1Q9NVA1 299 aa10.92□□□□□ -0.66
VPS39-210ENST00000568357 TRAV8-2A0A0B4J237 113 aa10.91□□□□□ -0.66
VPS39-210ENST00000568357 H0YIZ8 118 aa10.91□□□□□ -0.66
VPS39-210ENST00000568357 IGKV3-20P01619 116 aa10.91□□□□□ -0.66
VPS39-210ENST00000568357 S100A11P31949 105 aa10.91□□□□□ -0.66
VPS39-210ENST00000568357 CAMLGP49069 296 aa10.91□□□□□ -0.66
VPS39-210ENST00000568357 MEOX2P50222 304 aa10.91□□□□□ -0.66
VPS39-210ENST00000568357 PMS2P11Q13670 270 aa10.91□□□□□ -0.66
VPS39-210ENST00000568357 TMEM37Q8WXS4 190 aa10.91□□□□□ -0.66
VPS39-210ENST00000568357 XCL2Q9UBD3 114 aa10.91□□□□□ -0.66
VPS39-210ENST00000568357 WDR83OSQ9Y284 106 aa10.91□□□□□ -0.66
VPS39-210ENST00000568357 X6R8D5 127 aa10.91□□□□□ -0.66
VPS39-210ENST00000568357 CXorf65A6NEN9 183 aa10.9□□□□□ -0.66
VPS39-210ENST00000568357 ZNF705EA8MWA4 302 aaPredicted RBP10.9□□□□□ -0.66
VPS39-210ENST00000568357 RPL7P18124 248 aaKnown RBP10.9□□□□□ -0.66
VPS39-210ENST00000568357 NUTF2P61970 127 aaKnown RBP10.9□□□□□ -0.66
VPS39-210ENST00000568357 NHLH2Q02577 135 aa10.9□□□□□ -0.66
VPS39-210ENST00000568357 FGL1Q08830 312 aa10.9□□□□□ -0.66
VPS39-210ENST00000568357 LRRC37A5PQ49AS3 106 aa10.9□□□□□ -0.66
VPS39-210ENST00000568357 PXDC1Q5TGL8 231 aa10.9□□□□□ -0.66
VPS39-210ENST00000568357 SAMD13Q5VXD3 122 aa10.9□□□□□ -0.66
VPS39-210ENST00000568357 MIC13Q5XKP0 118 aa10.9□□□□□ -0.66
VPS39-210ENST00000568357 LINC00305Q7Z4B0 112 aa10.9□□□□□ -0.66
VPS39-210ENST00000568357 STX12Q86Y82 276 aa10.9□□□□□ -0.66
VPS39-210ENST00000568357 Q8NAQ8 132 aa10.9□□□□□ -0.66
VPS39-210ENST00000568357 C11orf68Q9H3H3 251 aaKnown RBP10.9□□□□□ -0.66
VPS39-210ENST00000568357 OR5AC2Q9NZP5 309 aa10.9□□□□□ -0.66
VPS39-210ENST00000568357 MRPS12O15235 138 aaKnown RBP10.89□□□□□ -0.67
VPS39-210ENST00000568357 SSNA1O43805 119 aa10.89□□□□□ -0.67
VPS39-210ENST00000568357 RLN2P04090 185 aa10.89□□□□□ -0.67
VPS39-210ENST00000568357 RBMY1A1P0DJD3 496 aaKnown RBP10.89□□□□□ -0.67
VPS39-210ENST00000568357 RBMY1CP0DJD4 496 aa10.89□□□□□ -0.67
VPS39-210ENST00000568357 FXYD7P58549 80 aa10.89□□□□□ -0.67
VPS39-210ENST00000568357 PRR20EP86478 221 aa10.89□□□□□ -0.67
VPS39-210ENST00000568357 PRR20CP86479 221 aa10.89□□□□□ -0.67
VPS39-210ENST00000568357 PRR20DP86480 221 aa10.89□□□□□ -0.67
VPS39-210ENST00000568357 PRR20BP86481 221 aa10.89□□□□□ -0.67
VPS39-210ENST00000568357 PRR20AP86496 221 aa10.89□□□□□ -0.67
VPS39-210ENST00000568357 CYCSP99999 105 aaKnown RBP10.89□□□□□ -0.67
VPS39-210ENST00000568357 RAB31Q13636 194 aa10.89□□□□□ -0.67
VPS39-210ENST00000568357 RBMY1FQ15415 496 aaKnown RBP10.89□□□□□ -0.67
VPS39-210ENST00000568357 FAM78BQ5VT40 261 aa10.89□□□□□ -0.67
VPS39-210ENST00000568357 MORN5Q5VZ52 161 aa10.89□□□□□ -0.67
VPS39-210ENST00000568357 RNF182Q8N6D2 247 aa10.89□□□□□ -0.67
VPS39-210ENST00000568357 OR4B1Q8NGF8 309 aa10.89□□□□□ -0.67
VPS39-210ENST00000568357 CLUHP3Q96NS8 147 aa10.89□□□□□ -0.67
VPS39-210ENST00000568357 RPRMQ9NS64 109 aa10.89□□□□□ -0.67
VPS39-210ENST00000568357 IGHV4-28A0A0C4DH34 117 aa10.88□□□□□ -0.67
VPS39-210ENST00000568357 A0A0J9YX75 114 aa10.88□□□□□ -0.67
VPS39-210ENST00000568357 UBE2L5PA0A1B0GUS4 154 aa10.88□□□□□ -0.67
VPS39-210ENST00000568357 E5RGE8 158 aa10.88□□□□□ -0.67
VPS39-210ENST00000568357 COX7A2P2O60397 106 aa10.88□□□□□ -0.67
VPS39-210ENST00000568357 SNRPCP09234 159 aaKnown RBP10.88□□□□□ -0.67
VPS39-210ENST00000568357 NANOS2P60321 138 aaKnown RBP10.88□□□□□ -0.67
VPS39-210ENST00000568357 HBG1P69891 147 aa10.88□□□□□ -0.67
VPS39-210ENST00000568357 HBG2P69892 147 aa10.88□□□□□ -0.67
VPS39-210ENST00000568357 ATP6V1FQ16864 119 aa10.88□□□□□ -0.67
VPS39-210ENST00000568357 EBLN2Q6P2I7 272 aa10.88□□□□□ -0.67
VPS39-210ENST00000568357 ZNF709Q8N972 641 aa10.88□□□□□ -0.67
VPS39-210ENST00000568357 RNF126Q9BV68 326 aa10.88□□□□□ -0.67
VPS39-210ENST00000568357 C1QTNF4Q9BXJ3 329 aa10.88□□□□□ -0.67
VPS39-210ENST00000568357 DNAJC4Q9NNZ3 241 aa10.88□□□□□ -0.67
VPS39-210ENST00000568357 ELOA3CA0A087WX78 387 aaPredicted RBP10.87□□□□□ -0.67
VPS39-210ENST00000568357 A0A087X0K7 114 aa10.87□□□□□ -0.67
VPS39-210ENST00000568357 TRAV5A0A0B4J249 113 aa10.87□□□□□ -0.67
VPS39-210ENST00000568357 MIFP14174 115 aa10.87□□□□□ -0.67
VPS39-210ENST00000568357 HLA-DMBP28068 263 aa10.87□□□□□ -0.67
VPS39-210ENST00000568357 RPL29P47914 159 aaKnown RBP10.87□□□□□ -0.67
VPS39-210ENST00000568357 PSG9Q00887 426 aa10.87□□□□□ -0.67
VPS39-210ENST00000568357 BAXQ07812 192 aa10.87□□□□□ -0.67
VPS39-210ENST00000568357 C10orf113Q5VZT2 155 aa10.87□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms