RNA–Protein interactions for RNA: ENST00000568232.1

CLK3-222, Transcript of CDC like kinase 3, humanhuman

Gene CLK3, Length 958 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-222ENST00000568232 TMEM70Q9BUB7 260 aa8□□□□□ -1.13
CLK3-222ENST00000568232 PBDC1Q9BVG4 233 aa8□□□□□ -1.13
CLK3-222ENST00000568232 MIXL1Q9H2W2 232 aa8□□□□□ -1.13
CLK3-222ENST00000568232 NOP10Q9NPE3 64 aaKnown RBP8□□□□□ -1.13
CLK3-222ENST00000568232 FAM212BQ9NTI7 297 aaPredicted RBP8□□□□□ -1.13
CLK3-222ENST00000568232 TOMM40O96008 361 aa7.99□□□□□ -1.13
CLK3-222ENST00000568232 P0C879 139 aa7.99□□□□□ -1.13
CLK3-222ENST00000568232 PSG1P11464 419 aa7.99□□□□□ -1.13
CLK3-222ENST00000568232 TAS2R20P59543 309 aa7.99□□□□□ -1.13
CLK3-222ENST00000568232 LINC01587Q99440 93 aa7.99□□□□□ -1.13
CLK3-222ENST00000568232 ENY2Q9NPA8 101 aa7.99□□□□□ -1.13
CLK3-222ENST00000568232 IFT46Q9NQC8 304 aa7.99□□□□□ -1.13
CLK3-222ENST00000568232 RPRMQ9NS64 109 aa7.99□□□□□ -1.13
CLK3-222ENST00000568232 COPZ2Q9P299 210 aa7.99□□□□□ -1.13
CLK3-222ENST00000568232 TIMM8BQ9Y5J9 83 aaPredicted RBP7.99□□□□□ -1.13
CLK3-222ENST00000568232 ISLRO14498 428 aa7.98□□□□□ -1.13
CLK3-222ENST00000568232 CTDSPLO15194 276 aa7.98□□□□□ -1.13
CLK3-222ENST00000568232 HPGDSO60760 199 aa7.98□□□□□ -1.13
CLK3-222ENST00000568232 CBX5P45973 191 aa7.98□□□□□ -1.13
CLK3-222ENST00000568232 CNN1P51911 297 aaKnown RBP7.98□□□□□ -1.13
CLK3-222ENST00000568232 AP3S2P59780 193 aa7.98□□□□□ -1.13
CLK3-222ENST00000568232 UBE2NLQ5JXB2 153 aa7.98□□□□□ -1.13
CLK3-222ENST00000568232 SAMD12Q8N8I0 201 aa7.98□□□□□ -1.13
CLK3-222ENST00000568232 ENKURQ8TC29 256 aa7.98□□□□□ -1.13
CLK3-222ENST00000568232 RNF125Q96EQ8 232 aa7.98□□□□□ -1.13
CLK3-222ENST00000568232 S100A16Q96FQ6 103 aaKnown RBP7.98□□□□□ -1.13
CLK3-222ENST00000568232 ACY3Q96HD9 319 aa7.98□□□□□ -1.13
CLK3-222ENST00000568232 SDHCQ99643 169 aaPredicted RBP7.98□□□□□ -1.13
CLK3-222ENST00000568232 PDCD10Q9BUL8 212 aa7.98□□□□□ -1.13
CLK3-222ENST00000568232 EXTL2Q9UBQ6 330 aa7.98□□□□□ -1.13
CLK3-222ENST00000568232 A0A096LPF7 62 aa7.97□□□□□ -1.13
CLK3-222ENST00000568232 IGLV5-52A0A0A0MRZ9 124 aa7.97□□□□□ -1.13
CLK3-222ENST00000568232 SLC25A4P12235 298 aa7.97□□□□□ -1.13
CLK3-222ENST00000568232 B2MP61769 119 aa7.97□□□□□ -1.13
CLK3-222ENST00000568232 IGFL4Q6B9Z1 124 aa7.97□□□□□ -1.13
CLK3-222ENST00000568232 OR5H2Q8NGV7 314 aa7.97□□□□□ -1.13
CLK3-222ENST00000568232 C16orf92Q96LL3 132 aa7.97□□□□□ -1.13
CLK3-222ENST00000568232 SLC25A39Q9BZJ4 359 aaPredicted RBP7.97□□□□□ -1.13
CLK3-222ENST00000568232 A0A0G2JRQ6 117 aa7.96□□□□□ -1.14
CLK3-222ENST00000568232 NAP1L6A6NFF2 107 aa7.96□□□□□ -1.14
CLK3-222ENST00000568232 NXPH4O95158 308 aa7.96□□□□□ -1.14
CLK3-222ENST00000568232 UCP1P25874 307 aa7.96□□□□□ -1.14
CLK3-222ENST00000568232 AKR1C2P52895 323 aa7.96□□□□□ -1.14
CLK3-222ENST00000568232 BAK1Q16611 211 aa7.96□□□□□ -1.14
CLK3-222ENST00000568232 TMEM144Q7Z5S9 345 aa7.96□□□□□ -1.14
CLK3-222ENST00000568232 AKAP14Q86UN6 197 aa7.96□□□□□ -1.14
CLK3-222ENST00000568232 NFE4Q86UQ8 179 aa7.96□□□□□ -1.14
CLK3-222ENST00000568232 OR10J6PQ8NGY7 276 aa7.96□□□□□ -1.14
CLK3-222ENST00000568232 TMEM170AQ8WVE7 144 aa7.96□□□□□ -1.14
CLK3-222ENST00000568232 C16orf74Q96GX8 76 aa7.96□□□□□ -1.14
CLK3-222ENST00000568232 VSIG2Q96IQ7 327 aa7.96□□□□□ -1.14
CLK3-222ENST00000568232 A0A0A6YYH2 397 aa7.95□□□□□ -1.14
CLK3-222ENST00000568232 FAM240BA0A1B0GVZ2 78 aa7.95□□□□□ -1.14
CLK3-222ENST00000568232 GAGE12BA1L429 117 aa7.95□□□□□ -1.14
CLK3-222ENST00000568232 A6NJ64 397 aa7.95□□□□□ -1.14
CLK3-222ENST00000568232 H3BNG1 76 aa7.95□□□□□ -1.14
CLK3-222ENST00000568232 LYRM1O43325 122 aa7.95□□□□□ -1.14
CLK3-222ENST00000568232 GAGE7O76087 117 aa7.95□□□□□ -1.14
CLK3-222ENST00000568232 GAGE12FP0CL80 117 aa7.95□□□□□ -1.14
CLK3-222ENST00000568232 GAGE12GP0CL81 117 aa7.95□□□□□ -1.14
CLK3-222ENST00000568232 GAGE12IP0CL82 117 aa7.95□□□□□ -1.14
CLK3-222ENST00000568232 PRB4P10163 310 aaPredicted RBP7.95□□□□□ -1.14
CLK3-222ENST00000568232 S100GP29377 79 aa7.95□□□□□ -1.14
CLK3-222ENST00000568232 HTR2BP41595 481 aa7.95□□□□□ -1.14
CLK3-222ENST00000568232 TAS2R60P59551 318 aa7.95□□□□□ -1.14
CLK3-222ENST00000568232 SUPT4H1P63272 117 aaKnown RBP7.95□□□□□ -1.14
CLK3-222ENST00000568232 NRARPQ7Z6K4 114 aa7.95□□□□□ -1.14
CLK3-222ENST00000568232 SNX29P2Q8IUI4 249 aa7.95□□□□□ -1.14
CLK3-222ENST00000568232 RNASE8Q8TDE3 154 aaKnown RBP7.95□□□□□ -1.14
CLK3-222ENST00000568232 DIABLOQ9NR28 239 aa7.95□□□□□ -1.14
CLK3-222ENST00000568232 LRP2P98164 4655 aa7.94□□□□□ -1.14
CLK3-222ENST00000568232 OXTP01178 125 aa7.94□□□□□ -1.14
CLK3-222ENST00000568232 HLA-DMAP28067 261 aa7.94□□□□□ -1.14
CLK3-222ENST00000568232 HRH1P35367 487 aa7.94□□□□□ -1.14
CLK3-222ENST00000568232 NUP62P37198 522 aaPredicted RBP7.94□□□□□ -1.14
CLK3-222ENST00000568232 TAS2R46P59540 309 aa7.94□□□□□ -1.14
CLK3-222ENST00000568232 ZNF90Q03938 601 aa7.94□□□□□ -1.14
CLK3-222ENST00000568232 SSBP1Q04837 148 aaKnown RBP7.94□□□□□ -1.14
CLK3-222ENST00000568232 C2orf83Q53S99 150 aa7.94□□□□□ -1.14
CLK3-222ENST00000568232 C1orf194Q5T5A4 169 aa7.94□□□□□ -1.14
CLK3-222ENST00000568232 OR8G2PQ6IF36 304 aa7.94□□□□□ -1.14
CLK3-222ENST00000568232 LPCAT3Q6P1A2 487 aa7.94□□□□□ -1.14
CLK3-222ENST00000568232 TMED4Q7Z7H5 227 aa7.94□□□□□ -1.14
CLK3-222ENST00000568232 OR8I2Q8N0Y5 310 aa7.94□□□□□ -1.14
CLK3-222ENST00000568232 TOMM5Q8N4H5 51 aa7.94□□□□□ -1.14
CLK3-222ENST00000568232 LINC00612Q8N6U2 182 aa7.94□□□□□ -1.14
CLK3-222ENST00000568232 RNASEH2CQ8TDP1 164 aaKnown RBP7.94□□□□□ -1.14
CLK3-222ENST00000568232 TP53RKQ96S44 253 aa7.94□□□□□ -1.14
CLK3-222ENST00000568232 HEYLQ9NQ87 328 aaPredicted RBP7.94□□□□□ -1.14
CLK3-222ENST00000568232 ANAPC10Q9UM13 185 aa7.94□□□□□ -1.14
CLK3-222ENST00000568232 BOLA2-SMG1P6H3BVE0 249 aa7.93□□□□□ -1.14
CLK3-222ENST00000568232 GABARAPH6UMI1 98 aa7.93□□□□□ -1.14
CLK3-222ENST00000568232 DUSP14O95147 198 aaKnown RBP7.93□□□□□ -1.14
CLK3-222ENST00000568232 PI3P19957 117 aa7.93□□□□□ -1.14
CLK3-222ENST00000568232 FAUP35544 74 aaKnown RBP7.93□□□□□ -1.14
CLK3-222ENST00000568232 LYZP61626 148 aa7.93□□□□□ -1.14
CLK3-222ENST00000568232 TSPAN5P62079 268 aa7.93□□□□□ -1.14
CLK3-222ENST00000568232 RNF182Q8N6D2 247 aa7.93□□□□□ -1.14
CLK3-222ENST00000568232 MARVELD1Q9BSK0 173 aa7.93□□□□□ -1.14
CLK3-222ENST00000568232 RSG1Q9BU20 258 aa7.93□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 48.9 ms