RNA–Protein interactions for RNA: ENST00000568029.5

VPS39-209, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 5

Gene VPS39, Length 791 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-209ENST00000568029 CORTO00230 105 aa4.65□□□□□ -1.67
VPS39-209ENST00000568029 PPP1R2P9O14990 202 aa4.65□□□□□ -1.67
VPS39-209ENST00000568029 EIF3GO75821 320 aaKnown RBP eCLIP4.65□□□□□ -1.67
VPS39-209ENST00000568029 CRYGBP07316 175 aa4.65□□□□□ -1.67
VPS39-209ENST00000568029 ARL14EPLP0DKL9 152 aa4.65□□□□□ -1.67
VPS39-209ENST00000568029 AREGP15514 252 aa4.65□□□□□ -1.67
VPS39-209ENST00000568029 PRTN3P24158 256 aa4.65□□□□□ -1.67
VPS39-209ENST00000568029 GCHFRP30047 84 aa4.65□□□□□ -1.67
VPS39-209ENST00000568029 RPS10P46783 165 aaKnown RBP4.65□□□□□ -1.67
VPS39-209ENST00000568029 RND2P52198 227 aa4.65□□□□□ -1.67
VPS39-209ENST00000568029 EFNA4P52798 201 aa4.65□□□□□ -1.67
VPS39-209ENST00000568029 UBE2G2P60604 165 aa4.65□□□□□ -1.67
VPS39-209ENST00000568029 ARF6P62330 175 aa4.65□□□□□ -1.67
VPS39-209ENST00000568029 DIAPH2-AS1Q14236 149 aa4.65□□□□□ -1.67
VPS39-209ENST00000568029 PLGLAQ15195 96 aa4.65□□□□□ -1.67
VPS39-209ENST00000568029 SSX2Q16385 188 aa4.65□□□□□ -1.67
VPS39-209ENST00000568029 TNXAQ16473 311 aa4.65□□□□□ -1.67
VPS39-209ENST00000568029 SMUG1Q53HV7 270 aa4.65□□□□□ -1.67
VPS39-209ENST00000568029 GCSAMLQ5JQS6 135 aa4.65□□□□□ -1.67
VPS39-209ENST00000568029 TPTE2P1Q5T6R2 138 aa4.65□□□□□ -1.67
VPS39-209ENST00000568029 FAM78BQ5VT40 261 aa4.65□□□□□ -1.67
VPS39-209ENST00000568029 C16orf54Q6UWD8 224 aa4.65□□□□□ -1.67
VPS39-209ENST00000568029 PPP1R27Q86WC6 154 aa4.65□□□□□ -1.67
VPS39-209ENST00000568029 Q8N9P0 234 aaPredicted RBP4.65□□□□□ -1.67
VPS39-209ENST00000568029 OR1L6Q8NGR2 347 aa4.65□□□□□ -1.67
VPS39-209ENST00000568029 GATAD1Q8WUU5 269 aa4.65□□□□□ -1.67
VPS39-209ENST00000568029 ISOC2Q96AB3 205 aa4.65□□□□□ -1.67
VPS39-209ENST00000568029 ACY3Q96HD9 319 aa4.65□□□□□ -1.67
VPS39-209ENST00000568029 BTF3L4Q96K17 158 aa4.65□□□□□ -1.67
VPS39-209ENST00000568029 OR5B12Q96R08 314 aa4.65□□□□□ -1.67
VPS39-209ENST00000568029 PFDN5Q99471 154 aa4.65□□□□□ -1.67
VPS39-209ENST00000568029 MRPL32Q9BYC8 188 aaKnown RBP4.65□□□□□ -1.67
VPS39-209ENST00000568029 PARLQ9H300 379 aa4.65□□□□□ -1.67
VPS39-209ENST00000568029 SAV1Q9H4B6 383 aaPredicted RBP4.65□□□□□ -1.67
VPS39-209ENST00000568029 DNAJC4Q9NNZ3 241 aa4.65□□□□□ -1.67
VPS39-209ENST00000568029 DOK5Q9P104 306 aa4.65□□□□□ -1.67
VPS39-209ENST00000568029 METTL1Q9UBP6 276 aaKnown RBP4.65□□□□□ -1.67
VPS39-209ENST00000568029 FUT9Q9Y231 359 aa4.65□□□□□ -1.67
VPS39-209ENST00000568029 SIGLEC9Q9Y336 463 aa4.65□□□□□ -1.67
VPS39-209ENST00000568029 PRR14LQ5THK1 2151 aa4.65□□□□□ -1.67
VPS39-209ENST00000568029 SACSQ9NZJ4 4579 aa4.65□□□□□ -1.67
VPS39-209ENST00000568029 IGHV3-72A0A0B4J1Y9 119 aa4.64□□□□□ -1.67
VPS39-209ENST00000568029 TCRBV4S1A1TA0A5B7 111 aa4.64□□□□□ -1.67
VPS39-209ENST00000568029 H7BYZ3 331 aa4.64□□□□□ -1.67
VPS39-209ENST00000568029 COX7A2P2O60397 106 aa4.64□□□□□ -1.67
VPS39-209ENST00000568029 LY6HO94772 140 aa4.64□□□□□ -1.67
VPS39-209ENST00000568029 CNIH1O95406 144 aa4.64□□□□□ -1.67
VPS39-209ENST00000568029 FABP1P07148 127 aa4.64□□□□□ -1.67
VPS39-209ENST00000568029 OR5G3P0C626 314 aa4.64□□□□□ -1.67
VPS39-209ENST00000568029 C8orf88P0DMB2 117 aa4.64□□□□□ -1.67
VPS39-209ENST00000568029 BPIFB3P59826 476 aa4.64□□□□□ -1.67
VPS39-209ENST00000568029 RPL23P62829 140 aaKnown RBP4.64□□□□□ -1.67
VPS39-209ENST00000568029 GNB1P62873 340 aa4.64□□□□□ -1.67
VPS39-209ENST00000568029 WT1-ASQ06250 92 aa4.64□□□□□ -1.67
VPS39-209ENST00000568029 ELOBQ15370 118 aa4.64□□□□□ -1.67
VPS39-209ENST00000568029 MINOS1Q5TGZ0 78 aa4.64□□□□□ -1.67
VPS39-209ENST00000568029 THAP8Q8NA92 274 aa4.64□□□□□ -1.67
VPS39-209ENST00000568029 ZNF114Q8NC26 417 aa4.64□□□□□ -1.67
VPS39-209ENST00000568029 OR1P1Q8NH06 330 aa4.64□□□□□ -1.67
VPS39-209ENST00000568029 OR2T6Q8NHC8 308 aa4.64□□□□□ -1.67
VPS39-209ENST00000568029 SGMS2Q8NHU3 365 aa4.64□□□□□ -1.67
VPS39-209ENST00000568029 FAM210BQ96KR6 192 aa4.64□□□□□ -1.67
VPS39-209ENST00000568029 YPEL4Q96NS1 127 aa4.64□□□□□ -1.67
VPS39-209ENST00000568029 MINOS1-NBL1R4GNA1 71 aa4.64□□□□□ -1.67
VPS39-209ENST00000568029 CADP27708 2225 aa4.64□□□□□ -1.67
VPS39-209ENST00000568029 TRBV24-1A0A075B6N3 115 aa4.63□□□□□ -1.67
VPS39-209ENST00000568029 A0A1W2PPI3 338 aa4.63□□□□□ -1.67
VPS39-209ENST00000568029 IGLC7A0M8Q6 106 aa4.63□□□□□ -1.67
VPS39-209ENST00000568029 E7EUB6 86 aa4.63□□□□□ -1.67
VPS39-209ENST00000568029 M0QZ24 198 aa4.63□□□□□ -1.67
VPS39-209ENST00000568029 TCF21O43680 179 aa4.63□□□□□ -1.67
VPS39-209ENST00000568029 OR7C2O60412 319 aa4.63□□□□□ -1.67
VPS39-209ENST00000568029 MOSP00540 346 aa4.63□□□□□ -1.67
VPS39-209ENST00000568029 PRSS2P07478 247 aa4.63□□□□□ -1.67
VPS39-209ENST00000568029 SRP14P37108 136 aaKnown RBP4.63□□□□□ -1.67
VPS39-209ENST00000568029 GALR1P47211 349 aa4.63□□□□□ -1.67
VPS39-209ENST00000568029 ATP5G3P48201 142 aa4.63□□□□□ -1.67
VPS39-209ENST00000568029 AKR1D1P51857 326 aa4.63□□□□□ -1.67
VPS39-209ENST00000568029 PAX2Q02962 417 aa4.63□□□□□ -1.67
VPS39-209ENST00000568029 C10orf55Q5SWW7 151 aa4.63□□□□□ -1.67
VPS39-209ENST00000568029 C10orf113Q5VZT2 155 aa4.63□□□□□ -1.67
VPS39-209ENST00000568029 PVRIGQ6DKI7 326 aa4.63□□□□□ -1.67
VPS39-209ENST00000568029 KCNIP4Q6PIL6 250 aa4.63□□□□□ -1.67
VPS39-209ENST00000568029 MIR17HGQ75NE6 70 aa4.63□□□□□ -1.67
VPS39-209ENST00000568029 C16orf82Q7Z2V1 217 aa4.63□□□□□ -1.67
VPS39-209ENST00000568029 ZFP82Q8N141 532 aa4.63□□□□□ -1.67
VPS39-209ENST00000568029 C3orf56Q8N813 242 aa4.63□□□□□ -1.67
VPS39-209ENST00000568029 STXBP6Q8NFX7 210 aa4.63□□□□□ -1.67
VPS39-209ENST00000568029 OR2T10Q8NGZ9 312 aa4.63□□□□□ -1.67
VPS39-209ENST00000568029 OR4X1Q8NH49 305 aa4.63□□□□□ -1.67
VPS39-209ENST00000568029 Q8WTZ3 238 aa4.63□□□□□ -1.67
VPS39-209ENST00000568029 TRGV9Q99603 122 aa4.63□□□□□ -1.67
VPS39-209ENST00000568029 SSX3Q99909 188 aa4.63□□□□□ -1.67
VPS39-209ENST00000568029 TNFRSF19Q9NS68 423 aa4.63□□□□□ -1.67
VPS39-209ENST00000568029 LY96Q9Y6Y9 160 aa4.63□□□□□ -1.67
VPS39-209ENST00000568029 URGCP-MRPS24S4R325 110 aa4.63□□□□□ -1.67
VPS39-209ENST00000568029 PCLOQ9Y6V0 5065 aa4.62□□□□□ -1.67
VPS39-209ENST00000568029 IGKV1OR2-108A0A075B7D4 117 aa4.62□□□□□ -1.67
VPS39-209ENST00000568029 MDFIC2A0A1B0GVS7 189 aa4.62□□□□□ -1.67
VPS39-209ENST00000568029 A0A1W2PRE2 83 aa4.62□□□□□ -1.67
Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms