RNA–Protein interactions for RNA: ENST00000566354.1

VPS4A-204, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 1 (best)

Gene VPS4A, Length 2,329 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-204ENST00000566354 LINC00305Q7Z4B0 112 aa10.61□□□□□ -0.71
VPS4A-204ENST00000566354 TMEM186Q96B77 213 aa10.61□□□□□ -0.71
VPS4A-204ENST00000566354 C7orf69Q9H7B7 122 aa10.61□□□□□ -0.71
VPS4A-204ENST00000566354 EPDR1Q9UM22 224 aa10.61□□□□□ -0.71
VPS4A-204ENST00000566354 A0A1W2PPR1 153 aa10.6□□□□□ -0.71
VPS4A-204ENST00000566354 FAM181BA6NEQ2 426 aa10.6□□□□□ -0.71
VPS4A-204ENST00000566354 CCL3L1P16619 93 aa10.6□□□□□ -0.71
VPS4A-204ENST00000566354 REG1BP48304 166 aa10.6□□□□□ -0.71
VPS4A-204ENST00000566354 TFPI2P48307 235 aa10.6□□□□□ -0.71
VPS4A-204ENST00000566354 SRSF1Q07955 248 aaKnown RBP eCLIP10.6□□□□□ -0.71
VPS4A-204ENST00000566354 ASPHD1Q5U4P2 390 aa10.6□□□□□ -0.71
VPS4A-204ENST00000566354 OR10X1Q8NGY0 326 aa10.6□□□□□ -0.71
VPS4A-204ENST00000566354 KLF12Q9Y4X4 402 aa10.6□□□□□ -0.71
VPS4A-204ENST00000566354 M0R2Z0 102 aa10.59□□□□□ -0.71
VPS4A-204ENST00000566354 PAX2Q02962 417 aa10.59□□□□□ -0.71
VPS4A-204ENST00000566354 TMEM200BQ69YZ2 307 aa10.59□□□□□ -0.71
VPS4A-204ENST00000566354 MUC15Q8N387 334 aa10.59□□□□□ -0.71
VPS4A-204ENST00000566354 C8orf31Q8N9H6 132 aa10.59□□□□□ -0.71
VPS4A-204ENST00000566354 PERPQ96FX8 193 aa10.59□□□□□ -0.71
VPS4A-204ENST00000566354 TNFRSF19Q9NS68 423 aa10.59□□□□□ -0.71
VPS4A-204ENST00000566354 WASHC3Q9Y3C0 194 aa10.59□□□□□ -0.71
VPS4A-204ENST00000566354 TACC2O95359 2948 aa10.59□□□□□ -0.71
VPS4A-204ENST00000566354 IGLV2-23P01705 113 aa10.59□□□□□ -0.71
VPS4A-204ENST00000566354 C10orf55Q5SWW7 151 aa10.59□□□□□ -0.71
VPS4A-204ENST00000566354 FAM162BQ5T6X4 162 aa10.59□□□□□ -0.71
VPS4A-204ENST00000566354 LINC00311Q8N616 119 aa10.59□□□□□ -0.71
VPS4A-204ENST00000566354 STPG4Q8N801 248 aa10.59□□□□□ -0.71
VPS4A-204ENST00000566354 OR8B3Q8NGG8 313 aa10.59□□□□□ -0.71
VPS4A-204ENST00000566354 GPR82Q96P67 336 aa10.59□□□□□ -0.71
VPS4A-204ENST00000566354 OR8B2Q96RD0 313 aa10.59□□□□□ -0.71
VPS4A-204ENST00000566354 DYNLRB1Q9NP97 96 aa10.59□□□□□ -0.71
VPS4A-204ENST00000566354 MRPS16Q9Y3D3 137 aaKnown RBP10.59□□□□□ -0.71
VPS4A-204ENST00000566354 TRAV9-2A0A087WT02 112 aa10.58□□□□□ -0.72
VPS4A-204ENST00000566354 A0A1B0GXF2 115 aa10.58□□□□□ -0.72
VPS4A-204ENST00000566354 B9A039 149 aa10.58□□□□□ -0.72
VPS4A-204ENST00000566354 IGHV3-48P01763 117 aa10.58□□□□□ -0.72
VPS4A-204ENST00000566354 SLC25A5P05141 298 aaKnown RBP10.58□□□□□ -0.72
VPS4A-204ENST00000566354 CAMPP49913 170 aa10.58□□□□□ -0.72
VPS4A-204ENST00000566354 VMA21Q3ZAQ7 101 aa10.58□□□□□ -0.72
VPS4A-204ENST00000566354 S100A7AQ86SG5 101 aa10.58□□□□□ -0.72
VPS4A-204ENST00000566354 FAM110AQ9BQ89 295 aa10.58□□□□□ -0.72
VPS4A-204ENST00000566354 PEF1Q9UBV8 284 aaKnown RBP10.58□□□□□ -0.72
VPS4A-204ENST00000566354 TSPOP30536 169 aa10.58□□□□□ -0.72
VPS4A-204ENST00000566354 GNG5P63218 68 aa10.58□□□□□ -0.72
VPS4A-204ENST00000566354 TCTEX1D4Q5JR98 221 aa10.58□□□□□ -0.72
VPS4A-204ENST00000566354 LCN12Q6JVE5 192 aa10.58□□□□□ -0.72
VPS4A-204ENST00000566354 ST6GALNAC6Q969X2 333 aa10.58□□□□□ -0.72
VPS4A-204ENST00000566354 MRPL36Q9P0J6 103 aaKnown RBP10.58□□□□□ -0.72
VPS4A-204ENST00000566354 PGPA6NDG6 321 aa10.57□□□□□ -0.72
VPS4A-204ENST00000566354 VWC2LB2RUY7 222 aa10.57□□□□□ -0.72
VPS4A-204ENST00000566354 ORM2P19652 201 aa10.57□□□□□ -0.72
VPS4A-204ENST00000566354 GPR6P46095 362 aaPredicted RBP10.57□□□□□ -0.72
VPS4A-204ENST00000566354 EBLN2Q6P2I7 272 aa10.57□□□□□ -0.72
VPS4A-204ENST00000566354 RNASEKQ6P5S7 137 aaKnown RBP10.57□□□□□ -0.72
VPS4A-204ENST00000566354 ZNF841Q6ZN19 808 aa10.57□□□□□ -0.72
VPS4A-204ENST00000566354 ATOH7Q8N100 152 aa10.57□□□□□ -0.72
VPS4A-204ENST00000566354 MLST8Q9BVC4 326 aa10.57□□□□□ -0.72
VPS4A-204ENST00000566354 PPIAL4EA0A075B759 164 aa10.57□□□□□ -0.72
VPS4A-204ENST00000566354 C2orf70A6NJV1 201 aa10.57□□□□□ -0.72
VPS4A-204ENST00000566354 A8MWL6 223 aa10.57□□□□□ -0.72
VPS4A-204ENST00000566354 PPIAL4DF5H284 164 aa10.57□□□□□ -0.72
VPS4A-204ENST00000566354 G3V4G9 280 aa10.57□□□□□ -0.72
VPS4A-204ENST00000566354 PPIAL4FP0DN26 164 aa10.57□□□□□ -0.72
VPS4A-204ENST00000566354 HBBP68871 147 aa10.57□□□□□ -0.72
VPS4A-204ENST00000566354 DIAPH2-AS1Q14236 149 aa10.57□□□□□ -0.72
VPS4A-204ENST00000566354 CT83Q5H943 113 aa10.57□□□□□ -0.72
VPS4A-204ENST00000566354 BLNKQ8WV28 456 aa10.57□□□□□ -0.72
VPS4A-204ENST00000566354 PRSS22Q9GZN4 317 aa10.57□□□□□ -0.72
VPS4A-204ENST00000566354 MEGF9Q9H1U4 602 aa10.57□□□□□ -0.72
VPS4A-204ENST00000566354 RPP21Q9H633 154 aaKnown RBP10.57□□□□□ -0.72
VPS4A-204ENST00000566354 PPIAL4AQ9Y536 164 aa10.57□□□□□ -0.72
VPS4A-204ENST00000566354 SOX21Q9Y651 276 aaPredicted RBP10.57□□□□□ -0.72
VPS4A-204ENST00000566354 TENM4Q6N022 2769 aa10.57□□□□□ -0.72
VPS4A-204ENST00000566354 CENPEQ02224 2701 aa10.56□□□□□ -0.72
VPS4A-204ENST00000566354 A0A1W2PPI3 338 aa10.56□□□□□ -0.72
VPS4A-204ENST00000566354 ZNF137PP52743 207 aa10.56□□□□□ -0.72
VPS4A-204ENST00000566354 CRYBA4P53673 196 aa10.56□□□□□ -0.72
VPS4A-204ENST00000566354 Q56UQ5 140 aa10.56□□□□□ -0.72
VPS4A-204ENST00000566354 OR1B1Q8NGR6 318 aa10.56□□□□□ -0.72
VPS4A-204ENST00000566354 H1FXQ92522 213 aaKnown RBP10.56□□□□□ -0.72
VPS4A-204ENST00000566354 FMC1Q96HJ9 113 aa10.56□□□□□ -0.72
VPS4A-204ENST00000566354 TRGV9Q99603 122 aa10.56□□□□□ -0.72
VPS4A-204ENST00000566354 IGHV2-26A0A0B4J1V2 119 aa10.56□□□□□ -0.72
VPS4A-204ENST00000566354 NDUFB3O43676 98 aa10.56□□□□□ -0.72
VPS4A-204ENST00000566354 FCN3O75636 299 aa10.56□□□□□ -0.72
VPS4A-204ENST00000566354 MOSP00540 346 aa10.56□□□□□ -0.72
VPS4A-204ENST00000566354 CLEC3BP05452 202 aa10.56□□□□□ -0.72
VPS4A-204ENST00000566354 LRRC10Q5BKY1 277 aa10.56□□□□□ -0.72
VPS4A-204ENST00000566354 PVRIGQ6DKI7 326 aa10.56□□□□□ -0.72
VPS4A-204ENST00000566354 C5orf17Q8NAS9 161 aa10.56□□□□□ -0.72
VPS4A-204ENST00000566354 USP9YO00507 2555 aaPredicted RBP10.55□□□□□ -0.72
VPS4A-204ENST00000566354 TMEM178BH3BS89 294 aa10.55□□□□□ -0.72
VPS4A-204ENST00000566354 ZNF492Q9P255 531 aa10.55□□□□□ -0.72
VPS4A-204ENST00000566354 IGHV1-69-2A0A0G2JMI3 117 aa10.55□□□□□ -0.72
VPS4A-204ENST00000566354 OR11H12B2RN74 326 aa10.55□□□□□ -0.72
VPS4A-204ENST00000566354 LTAP01374 205 aa10.55□□□□□ -0.72
VPS4A-204ENST00000566354 P01737 135 aa10.55□□□□□ -0.72
VPS4A-204ENST00000566354 SMIM17P0DL12 118 aa10.55□□□□□ -0.72
VPS4A-204ENST00000566354 CEACAM3P40198 252 aa10.55□□□□□ -0.72
VPS4A-204ENST00000566354 TMEM116Q8NCL8 245 aa10.55□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 35.9 ms