RNA–Protein interactions for RNA: ENST00000565228.1

VPS35-206, Transcript of VPS35, retromer complex component, humanhuman

TSL 3

Gene VPS35, Length 487 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-206ENST00000565228 NPCDR1Q9BY65 106 aa6.76□□□□□ -1.33
VPS35-206ENST00000565228 ARV1Q9H2C2 271 aa6.76□□□□□ -1.33
VPS35-206ENST00000565228 TUBA4BQ9H853 241 aa6.76□□□□□ -1.33
VPS35-206ENST00000565228 SLC25A22Q9H936 323 aa6.76□□□□□ -1.33
VPS35-206ENST00000565228 F6UB75 175 aa6.75□□□□□ -1.33
VPS35-206ENST00000565228 H3BQ15 152 aa6.75□□□□□ -1.33
VPS35-206ENST00000565228 H3BTX0 84 aa6.75□□□□□ -1.33
VPS35-206ENST00000565228 DNASE2O00115 360 aaPredicted RBP6.75□□□□□ -1.33
VPS35-206ENST00000565228 HYPMO75409 117 aa6.75□□□□□ -1.33
VPS35-206ENST00000565228 OR5G3P0C626 314 aa6.75□□□□□ -1.33
VPS35-206ENST00000565228 RPL12P30050 165 aaKnown RBP6.75□□□□□ -1.33
VPS35-206ENST00000565228 BAXQ07812 192 aa6.75□□□□□ -1.33
VPS35-206ENST00000565228 PSMG4Q5JS54 123 aa6.75□□□□□ -1.33
VPS35-206ENST00000565228 C1orf194Q5T5A4 169 aa6.75□□□□□ -1.33
VPS35-206ENST00000565228 TRPT1Q86TN4 253 aaKnown RBP6.75□□□□□ -1.33
VPS35-206ENST00000565228 OR11H4Q8NGC9 324 aa6.75□□□□□ -1.33
VPS35-206ENST00000565228 RSG1Q9BU20 258 aa6.75□□□□□ -1.33
VPS35-206ENST00000565228 WDR61Q9GZS3 305 aaKnown RBP6.75□□□□□ -1.33
VPS35-206ENST00000565228 EDA2RQ9HAV5 297 aa6.75□□□□□ -1.33
VPS35-206ENST00000565228 NRN1Q9NPD7 142 aa6.75□□□□□ -1.33
VPS35-206ENST00000565228 SLC39A9Q9NUM3 307 aa6.75□□□□□ -1.33
VPS35-206ENST00000565228 HIGD1AQ9Y241 93 aa6.75□□□□□ -1.33
VPS35-206ENST00000565228 PXMP4Q9Y6I8 212 aa6.75□□□□□ -1.33
VPS35-206ENST00000565228 U3KQK5 164 aa6.75□□□□□ -1.33
VPS35-206ENST00000565228 LOC102724200A0A096LPH7 203 aaPredicted RBP6.74□□□□□ -1.33
VPS35-206ENST00000565228 HELTA6NFD8 242 aa6.74□□□□□ -1.33
VPS35-206ENST00000565228 SLC17A3O00476 420 aa6.74□□□□□ -1.33
VPS35-206ENST00000565228 SCGB2A1O75556 95 aa6.74□□□□□ -1.33
VPS35-206ENST00000565228 GIPP09681 153 aaPredicted RBP6.74□□□□□ -1.33
VPS35-206ENST00000565228 NHLRC4P0CG21 123 aaPredicted RBP6.74□□□□□ -1.33
VPS35-206ENST00000565228 RPL29P47914 159 aaKnown RBP6.74□□□□□ -1.33
VPS35-206ENST00000565228 SELENOTP62341 195 aa6.74□□□□□ -1.33
VPS35-206ENST00000565228 LINC00305Q7Z4B0 112 aa6.74□□□□□ -1.33
VPS35-206ENST00000565228 ZNF546Q86UE3 836 aa6.74□□□□□ -1.33
VPS35-206ENST00000565228 STX12Q86Y82 276 aa6.74□□□□□ -1.33
VPS35-206ENST00000565228 OR8I2Q8N0Y5 310 aa6.74□□□□□ -1.33
VPS35-206ENST00000565228 RNF182Q8N6D2 247 aa6.74□□□□□ -1.33
VPS35-206ENST00000565228 ZNF503Q96F45 646 aa6.74□□□□□ -1.33
VPS35-206ENST00000565228 GRAMD2BQ96HH9 432 aa6.74□□□□□ -1.33
VPS35-206ENST00000565228 FAM167A-AS1Q96KT0 104 aa6.74□□□□□ -1.33
VPS35-206ENST00000565228 ATP5SQ99766 215 aa6.74□□□□□ -1.33
VPS35-206ENST00000565228 TMEM231Q9H6L2 316 aa6.74□□□□□ -1.33
VPS35-206ENST00000565228 FBXL17Q9UF56 701 aa6.74□□□□□ -1.33
VPS35-206ENST00000565228 PCLOQ9Y6V0 5065 aa6.73□□□□□ -1.33
VPS35-206ENST00000565228 CFDP00746 253 aaPredicted RBP6.73□□□□□ -1.33
VPS35-206ENST00000565228 RLN2P04090 185 aa6.73□□□□□ -1.33
VPS35-206ENST00000565228 FABP1P07148 127 aa6.73□□□□□ -1.33
VPS35-206ENST00000565228 ZNF705DP0CH99 300 aaPredicted RBP6.73□□□□□ -1.33
VPS35-206ENST00000565228 ZNF705BP0CI00 300 aaPredicted RBP6.73□□□□□ -1.33
VPS35-206ENST00000565228 IGLC2P0DOY2 106 aa6.73□□□□□ -1.33
VPS35-206ENST00000565228 B2MP61769 119 aa6.73□□□□□ -1.33
VPS35-206ENST00000565228 ATP6V1FQ16864 119 aa6.73□□□□□ -1.33
VPS35-206ENST00000565228 DEFB135Q30KP9 77 aa6.73□□□□□ -1.33
VPS35-206ENST00000565228 ACTL10Q5JWF8 245 aa6.73□□□□□ -1.33
VPS35-206ENST00000565228 Q6ZNX1 250 aa6.73□□□□□ -1.33
VPS35-206ENST00000565228 CSNK1G2-AS1Q8NCQ2 148 aa6.73□□□□□ -1.33
VPS35-206ENST00000565228 PPP1R14BQ96C90 147 aa6.73□□□□□ -1.33
VPS35-206ENST00000565228 SLC25A2Q9BXI2 301 aa6.73□□□□□ -1.33
VPS35-206ENST00000565228 SLC25A31Q9H0C2 315 aa6.73□□□□□ -1.33
VPS35-206ENST00000565228 SEPSECSQ9HD40 501 aaKnown RBP6.73□□□□□ -1.33
VPS35-206ENST00000565228 A0A087X0K7 114 aa6.72□□□□□ -1.33
VPS35-206ENST00000565228 PRAC2D3DTV9 90 aa6.72□□□□□ -1.33
VPS35-206ENST00000565228 H3BMM0 161 aa6.72□□□□□ -1.33
VPS35-206ENST00000565228 NDUFB4O95168 129 aa6.72□□□□□ -1.33
VPS35-206ENST00000565228 CD5P06127 495 aa6.72□□□□□ -1.33
VPS35-206ENST00000565228 BMI1P35226 326 aa6.72□□□□□ -1.33
VPS35-206ENST00000565228 AP2S1P53680 142 aaPredicted RBP6.72□□□□□ -1.33
VPS35-206ENST00000565228 PAFAH1B2P68402 229 aa6.72□□□□□ -1.33
VPS35-206ENST00000565228 HBG1P69891 147 aa6.72□□□□□ -1.33
VPS35-206ENST00000565228 HBG2P69892 147 aa6.72□□□□□ -1.33
VPS35-206ENST00000565228 MIR17HGQ75NE6 70 aa6.72□□□□□ -1.33
VPS35-206ENST00000565228 SAT2Q96F10 170 aaPredicted RBP6.72□□□□□ -1.33
VPS35-206ENST00000565228 NARS2Q96I59 477 aaKnown RBP6.72□□□□□ -1.33
VPS35-206ENST00000565228 AQP10Q96PS8 301 aa6.72□□□□□ -1.33
VPS35-206ENST00000565228 DNAJC4Q9NNZ3 241 aa6.72□□□□□ -1.33
VPS35-206ENST00000565228 ZNF586Q9NXT0 402 aa6.72□□□□□ -1.33
VPS35-206ENST00000565228 TNFSF18Q9UNG2 199 aa6.72□□□□□ -1.33
VPS35-206ENST00000565228 A0A1B0GVG6 124 aa6.71□□□□□ -1.34
VPS35-206ENST00000565228 J3QL48 77 aa6.71□□□□□ -1.34
VPS35-206ENST00000565228 COX7A2P2O60397 106 aa6.71□□□□□ -1.34
VPS35-206ENST00000565228 PYYP10082 97 aa6.71□□□□□ -1.34
VPS35-206ENST00000565228 FXYD7P58549 80 aa6.71□□□□□ -1.34
VPS35-206ENST00000565228 RAP2BP61225 183 aa6.71□□□□□ -1.34
VPS35-206ENST00000565228 CD300CQ08708 224 aa6.71□□□□□ -1.34
VPS35-206ENST00000565228 C10orf113Q5VZT2 155 aa6.71□□□□□ -1.34
VPS35-206ENST00000565228 AMTNQ6UX39 209 aa6.71□□□□□ -1.34
VPS35-206ENST00000565228 ZNF709Q8N972 641 aa6.71□□□□□ -1.34
VPS35-206ENST00000565228 OR2T35Q8NGX2 323 aa6.71□□□□□ -1.34
VPS35-206ENST00000565228 RNF183Q96D59 192 aa6.71□□□□□ -1.34
VPS35-206ENST00000565228 ST6GAL2Q96JF0 529 aa6.71□□□□□ -1.34
VPS35-206ENST00000565228 LINC00052Q96N35 136 aa6.71□□□□□ -1.34
VPS35-206ENST00000565228 SPATA25Q9BR10 227 aa6.71□□□□□ -1.34
VPS35-206ENST00000565228 SAV1Q9H4B6 383 aaPredicted RBP6.71□□□□□ -1.34
VPS35-206ENST00000565228 CYTL1Q9NRR1 136 aa6.71□□□□□ -1.34
VPS35-206ENST00000565228 CLEC5AQ9NY25 188 aa6.71□□□□□ -1.34
VPS35-206ENST00000565228 KIR2DL5BA0A0G2JN68 375 aa6.7□□□□□ -1.34
VPS35-206ENST00000565228 KIR2DL5BA0A0G2JPC4 375 aa6.7□□□□□ -1.34
VPS35-206ENST00000565228 A0A0J9YX75 114 aa6.7□□□□□ -1.34
VPS35-206ENST00000565228 A8MTW9 85 aa6.7□□□□□ -1.34
VPS35-206ENST00000565228 ZNF705FA8MVS1 300 aaPredicted RBP6.7□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 38.8 ms