RNA–Protein interactions for RNA: ENST00000565047.1

CLN3-213, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 461 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-213ENST00000565047 OR1B1Q8NGR6 318 aa10.67□□□□□ -0.7
CLN3-213ENST00000565047 PPP1R14BQ96C90 147 aa10.67□□□□□ -0.7
CLN3-213ENST00000565047 SHANK2-AS3Q9BTD1 123 aa10.67□□□□□ -0.7
CLN3-213ENST00000565047 SCRT1Q9BWW7 348 aa10.67□□□□□ -0.7
CLN3-213ENST00000565047 SLC25A39Q9BZJ4 359 aaPredicted RBP10.67□□□□□ -0.7
CLN3-213ENST00000565047 SLC35B3Q9H1N7 401 aa10.67□□□□□ -0.7
CLN3-213ENST00000565047 SLC25A22Q9H936 323 aa10.67□□□□□ -0.7
CLN3-213ENST00000565047 MRPS12O15235 138 aaKnown RBP10.66□□□□□ -0.7
CLN3-213ENST00000565047 DEDDO75618 318 aa10.66□□□□□ -0.7
CLN3-213ENST00000565047 IGKV3-20P01619 116 aa10.66□□□□□ -0.7
CLN3-213ENST00000565047 GALR1P47211 349 aa10.66□□□□□ -0.7
CLN3-213ENST00000565047 IL15RAQ13261 267 aa10.66□□□□□ -0.7
CLN3-213ENST00000565047 LINC00299Q6ZSB3 139 aa10.66□□□□□ -0.7
CLN3-213ENST00000565047 C1orf158Q8N1D5 194 aa10.66□□□□□ -0.7
CLN3-213ENST00000565047 GPR82Q96P67 336 aa10.66□□□□□ -0.7
CLN3-213ENST00000565047 TMEM147Q9BVK8 224 aa10.66□□□□□ -0.7
CLN3-213ENST00000565047 NPVFQ9HCQ7 196 aa10.66□□□□□ -0.7
CLN3-213ENST00000565047 DNAH17Q9UFH2 4485 aa10.66□□□□□ -0.7
CLN3-213ENST00000565047 HECTD4Q9Y4D8 3996 aa10.65□□□□□ -0.7
CLN3-213ENST00000565047 CCSO14618 274 aa10.65□□□□□ -0.7
CLN3-213ENST00000565047 IL5P05113 134 aa10.65□□□□□ -0.7
CLN3-213ENST00000565047 FXYD7P58549 80 aa10.65□□□□□ -0.7
CLN3-213ENST00000565047 RRAS2P62070 204 aaPredicted RBP10.65□□□□□ -0.7
CLN3-213ENST00000565047 SELENOTP62341 195 aa10.65□□□□□ -0.7
CLN3-213ENST00000565047 OR10P1Q8NGE3 313 aa10.65□□□□□ -0.7
CLN3-213ENST00000565047 ZNF431Q8TF32 576 aaPredicted RBP10.65□□□□□ -0.7
CLN3-213ENST00000565047 C16orf92Q96LL3 132 aa10.65□□□□□ -0.7
CLN3-213ENST00000565047 SEC22CQ9BRL7 303 aa10.65□□□□□ -0.7
CLN3-213ENST00000565047 CCDC32Q9BV29 185 aa10.65□□□□□ -0.7
CLN3-213ENST00000565047 GSKIPQ9P0R6 139 aa10.65□□□□□ -0.7
CLN3-213ENST00000565047 TRAV10A0A0B4J240 114 aa10.64□□□□□ -0.71
CLN3-213ENST00000565047 SMIM9A6NGZ8 99 aa10.64□□□□□ -0.71
CLN3-213ENST00000565047 IGLL5B9A064 214 aa10.64□□□□□ -0.71
CLN3-213ENST00000565047 HYPMO75409 117 aa10.64□□□□□ -0.71
CLN3-213ENST00000565047 SCGB1D2O95969 90 aa10.64□□□□□ -0.71
CLN3-213ENST00000565047 LINC00869P0C866 280 aa10.64□□□□□ -0.71
CLN3-213ENST00000565047 PSG9Q00887 426 aa10.64□□□□□ -0.71
CLN3-213ENST00000565047 TEPPQ6URK8 271 aa10.64□□□□□ -0.71
CLN3-213ENST00000565047 OR4B1Q8NGF8 309 aa10.64□□□□□ -0.71
CLN3-213ENST00000565047 UHRF2Q96PU4 802 aa10.64□□□□□ -0.71
CLN3-213ENST00000565047 GGACTQ9BVM4 153 aa10.64□□□□□ -0.71
CLN3-213ENST00000565047 RPRMQ9NS64 109 aa10.64□□□□□ -0.71
CLN3-213ENST00000565047 NUDT15Q9NV35 164 aa10.64□□□□□ -0.71
CLN3-213ENST00000565047 DOK5Q9P104 306 aa10.64□□□□□ -0.71
CLN3-213ENST00000565047 TRAV6A0A075B6T7 132 aa10.63□□□□□ -0.71
CLN3-213ENST00000565047 SMCO3A2RU48 225 aa10.63□□□□□ -0.71
CLN3-213ENST00000565047 CRXO43186 299 aaPredicted RBP10.63□□□□□ -0.71
CLN3-213ENST00000565047 SLC38A11Q08AI6 406 aa10.63□□□□□ -0.71
CLN3-213ENST00000565047 IGFL4Q6B9Z1 124 aa10.63□□□□□ -0.71
CLN3-213ENST00000565047 EBLN2Q6P2I7 272 aa10.63□□□□□ -0.71
CLN3-213ENST00000565047 ZNF767PQ75MW2 155 aa10.63□□□□□ -0.71
CLN3-213ENST00000565047 HIGD1AQ9Y241 93 aa10.63□□□□□ -0.71
CLN3-213ENST00000565047 A0A087X0K7 114 aa10.62□□□□□ -0.71
CLN3-213ENST00000565047 RNF182Q8N6D2 247 aa10.62□□□□□ -0.71
CLN3-213ENST00000565047 MGST2Q99735 147 aa10.62□□□□□ -0.71
CLN3-213ENST00000565047 IGHV4-4A0A075B6R2 117 aa10.61□□□□□ -0.71
CLN3-213ENST00000565047 AGPAT2O15120 278 aa10.61□□□□□ -0.71
CLN3-213ENST00000565047 H2AFB2P0C5Z0 115 aa10.61□□□□□ -0.71
CLN3-213ENST00000565047 RPL7P18124 248 aaKnown RBP10.61□□□□□ -0.71
CLN3-213ENST00000565047 CXCL3P19876 107 aa10.61□□□□□ -0.71
CLN3-213ENST00000565047 S100A7P31151 101 aa10.61□□□□□ -0.71
CLN3-213ENST00000565047 CNN1P51911 297 aaKnown RBP10.61□□□□□ -0.71
CLN3-213ENST00000565047 RAP2BP61225 183 aa10.61□□□□□ -0.71
CLN3-213ENST00000565047 TMEM37Q8WXS4 190 aa10.61□□□□□ -0.71
CLN3-213ENST00000565047 RNF126Q9BV68 326 aa10.61□□□□□ -0.71
CLN3-213ENST00000565047 ARL6Q9H0F7 186 aa10.61□□□□□ -0.71
CLN3-213ENST00000565047 ARV1Q9H2C2 271 aa10.61□□□□□ -0.71
CLN3-213ENST00000565047 DKK2Q9UBU2 259 aa10.61□□□□□ -0.71
CLN3-213ENST00000565047 RFNGQ9Y644 331 aa10.61□□□□□ -0.71
CLN3-213ENST00000565047 TMEM189A5PLL7 270 aa10.6□□□□□ -0.71
CLN3-213ENST00000565047 A6NHS1 94 aa10.6□□□□□ -0.71
CLN3-213ENST00000565047 AMBPP02760 352 aa10.6□□□□□ -0.71
CLN3-213ENST00000565047 OR5G3P0C626 314 aa10.6□□□□□ -0.71
CLN3-213ENST00000565047 VWC2Q2TAL6 325 aa10.6□□□□□ -0.71
CLN3-213ENST00000565047 PXDC1Q5TGL8 231 aa10.6□□□□□ -0.71
CLN3-213ENST00000565047 MORN5Q5VZ52 161 aa10.6□□□□□ -0.71
CLN3-213ENST00000565047 C12orf45Q8N5I9 185 aaPredicted RBP10.6□□□□□ -0.71
CLN3-213ENST00000565047 OR11H7Q8NGC8 314 aa10.6□□□□□ -0.71
CLN3-213ENST00000565047 C2orf50Q96LR7 162 aa10.6□□□□□ -0.71
CLN3-213ENST00000565047 IGF2BP2-AS1Q96M15 143 aa10.6□□□□□ -0.71
CLN3-213ENST00000565047 MGAT4CQ9UBM8 478 aa10.6□□□□□ -0.71
CLN3-213ENST00000565047 IGHV3OR16-12A0A075B7B8 117 aa10.59□□□□□ -0.71
CLN3-213ENST00000565047 DEFB131BA0A096LNP1 70 aa10.59□□□□□ -0.71
CLN3-213ENST00000565047 FAM24AA6NFZ4 105 aa10.59□□□□□ -0.71
CLN3-213ENST00000565047 SPART-AS1P0CW21 52 aa10.59□□□□□ -0.71
CLN3-213ENST00000565047 IFITM3Q01628 133 aa10.59□□□□□ -0.71
CLN3-213ENST00000565047 ASAH1Q13510 395 aa10.59□□□□□ -0.71
CLN3-213ENST00000565047 ZNF546Q86UE3 836 aa10.59□□□□□ -0.71
CLN3-213ENST00000565047 PLA2G2EQ9NZK7 142 aa10.59□□□□□ -0.71
CLN3-213ENST00000565047 PRM2P04554 102 aa10.58□□□□□ -0.72
CLN3-213ENST00000565047 PSG3Q16557 428 aa10.58□□□□□ -0.72
CLN3-213ENST00000565047 LINC00305Q7Z4B0 112 aa10.58□□□□□ -0.72
CLN3-213ENST00000565047 WDR83OSQ9Y284 106 aa10.58□□□□□ -0.72
CLN3-213ENST00000565047 GOLT1BQ9Y3E0 138 aa10.58□□□□□ -0.72
CLN3-213ENST00000565047 LSM5Q9Y4Y9 91 aaKnown RBP10.58□□□□□ -0.72
CLN3-213ENST00000565047 HERC2O95714 4834 aa10.58□□□□□ -0.72
CLN3-213ENST00000565047 FAM240BA0A1B0GVZ2 78 aa10.57□□□□□ -0.72
CLN3-213ENST00000565047 PLAC8L1A1L4L8 177 aa10.57□□□□□ -0.72
CLN3-213ENST00000565047 C5orf51A6NDU8 294 aa10.57□□□□□ -0.72
CLN3-213ENST00000565047 FAM25EA8MYX2 175 aa10.57□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 59.3 ms