RNA–Protein interactions for RNA: ENST00000562670.5

CLK3-209, Transcript of CDC like kinase 3, humanhuman

TSL 4

Gene CLK3, Length 544 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-209ENST00000562670 UNQ9165/PRO28630Q6UXU0 137 aa10.66□□□□□ -0.7
CLK3-209ENST00000562670 C1QL4Q86Z23 238 aa10.66□□□□□ -0.7
CLK3-209ENST00000562670 IQCF2Q8IXL9 164 aa10.66□□□□□ -0.7
CLK3-209ENST00000562670 KLHL30-AS1Q8NEE0 82 aa10.66□□□□□ -0.7
CLK3-209ENST00000562670 OR5B12Q96R08 314 aa10.66□□□□□ -0.7
CLK3-209ENST00000562670 TCEAL7Q9BRU2 100 aa10.66□□□□□ -0.7
CLK3-209ENST00000562670 NKX6-2Q9C056 277 aaPredicted RBP10.66□□□□□ -0.7
CLK3-209ENST00000562670 EIF5A2Q9GZV4 153 aaKnown RBP10.66□□□□□ -0.7
CLK3-209ENST00000562670 A0A087X0K7 114 aa10.65□□□□□ -0.7
CLK3-209ENST00000562670 LINC01619G3V211 115 aa10.65□□□□□ -0.7
CLK3-209ENST00000562670 HOXD3P31249 432 aaPredicted RBP10.65□□□□□ -0.7
CLK3-209ENST00000562670 BMI1P35226 326 aa10.65□□□□□ -0.7
CLK3-209ENST00000562670 MEOX2P50222 304 aa10.65□□□□□ -0.7
CLK3-209ENST00000562670 KHDC1LQ5JSQ8 128 aa10.65□□□□□ -0.7
CLK3-209ENST00000562670 OR4F17Q8NGA8 305 aa10.65□□□□□ -0.7
CLK3-209ENST00000562670 OR4F4Q96R69 305 aa10.65□□□□□ -0.7
CLK3-209ENST00000562670 CITED4Q96RK1 184 aa10.65□□□□□ -0.7
CLK3-209ENST00000562670 TMEM231Q9H6L2 316 aa10.65□□□□□ -0.7
CLK3-209ENST00000562670 A0A1W2PS18 150 aa10.64□□□□□ -0.71
CLK3-209ENST00000562670 FAM74A7A6NL05 159 aa10.64□□□□□ -0.71
CLK3-209ENST00000562670 TMEM250H0YL14 139 aa10.64□□□□□ -0.71
CLK3-209ENST00000562670 ZNF253O75346 499 aa10.64□□□□□ -0.71
CLK3-209ENST00000562670 PYYP10082 97 aa10.64□□□□□ -0.71
CLK3-209ENST00000562670 SRSF3P84103 164 aaKnown RBP10.64□□□□□ -0.71
CLK3-209ENST00000562670 KLF5Q13887 457 aaPredicted RBP10.64□□□□□ -0.71
CLK3-209ENST00000562670 HAGHQ16775 308 aa10.64□□□□□ -0.71
CLK3-209ENST00000562670 LEMD1Q68G75 181 aa10.64□□□□□ -0.71
CLK3-209ENST00000562670 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP10.64□□□□□ -0.71
CLK3-209ENST00000562670 GRAMD2BQ96HH9 432 aa10.64□□□□□ -0.71
CLK3-209ENST00000562670 CITED2Q99967 270 aaPredicted RBP10.64□□□□□ -0.71
CLK3-209ENST00000562670 C20orf24Q9BUV8 137 aa10.64□□□□□ -0.71
CLK3-209ENST00000562670 ELOVL1Q9BW60 279 aa10.64□□□□□ -0.71
CLK3-209ENST00000562670 IGHV7-4-1A0A0J9YVY3 117 aa10.63□□□□□ -0.71
CLK3-209ENST00000562670 TMEM213A2RRL7 107 aa10.63□□□□□ -0.71
CLK3-209ENST00000562670 KRBOX1C9JBD0 128 aa10.63□□□□□ -0.71
CLK3-209ENST00000562670 PDE6DO43924 150 aa10.63□□□□□ -0.71
CLK3-209ENST00000562670 PAGE4O60829 102 aa10.63□□□□□ -0.71
CLK3-209ENST00000562670 OR10J4P0C629 311 aa10.63□□□□□ -0.71
CLK3-209ENST00000562670 NBEAP1P0C6P0 100 aa10.63□□□□□ -0.71
CLK3-209ENST00000562670 S100A1P23297 94 aa10.63□□□□□ -0.71
CLK3-209ENST00000562670 CD81P60033 236 aa10.63□□□□□ -0.71
CLK3-209ENST00000562670 C16orf54Q6UWD8 224 aa10.63□□□□□ -0.71
CLK3-209ENST00000562670 C18orf65Q6ZTR6 163 aa10.63□□□□□ -0.71
CLK3-209ENST00000562670 NDUFA11Q86Y39 141 aa10.63□□□□□ -0.71
CLK3-209ENST00000562670 OR8I2Q8N0Y5 310 aa10.63□□□□□ -0.71
CLK3-209ENST00000562670 LYPD1Q8N2G4 141 aa10.63□□□□□ -0.71
CLK3-209ENST00000562670 OR1N2Q8NGR9 330 aa10.63□□□□□ -0.71
CLK3-209ENST00000562670 GLMPQ8WWB7 406 aa10.63□□□□□ -0.71
CLK3-209ENST00000562670 RARRES2Q99969 163 aa10.63□□□□□ -0.71
CLK3-209ENST00000562670 SLC35B3Q9H1N7 401 aa10.63□□□□□ -0.71
CLK3-209ENST00000562670 YTHDF2Q9Y5A9 579 aaKnown RBP10.63□□□□□ -0.71
CLK3-209ENST00000562670 TRBV19A0A075B6N1 114 aa10.62□□□□□ -0.71
CLK3-209ENST00000562670 IGHV3OR16-8A0A075B7F1 116 aa10.62□□□□□ -0.71
CLK3-209ENST00000562670 TMEM218A2RU14 115 aa10.62□□□□□ -0.71
CLK3-209ENST00000562670 ADARB2-AS1A8MUL3 147 aa10.62□□□□□ -0.71
CLK3-209ENST00000562670 C11orf94C9JXX5 98 aa10.62□□□□□ -0.71
CLK3-209ENST00000562670 F6UZH7 168 aa10.62□□□□□ -0.71
CLK3-209ENST00000562670 HAX1O00165 279 aa10.62□□□□□ -0.71
CLK3-209ENST00000562670 MYCNOSP40205 109 aa10.62□□□□□ -0.71
CLK3-209ENST00000562670 GALR1P47211 349 aa10.62□□□□□ -0.71
CLK3-209ENST00000562670 CCDC28AQ8IWP9 274 aa10.62□□□□□ -0.71
CLK3-209ENST00000562670 OR11H1Q8NG94 326 aa10.62□□□□□ -0.71
CLK3-209ENST00000562670 RXFP4Q8TDU9 374 aa10.62□□□□□ -0.71
CLK3-209ENST00000562670 DPF1Q92782 380 aa10.62□□□□□ -0.71
CLK3-209ENST00000562670 C11orf52Q96A22 123 aa10.62□□□□□ -0.71
CLK3-209ENST00000562670 TREM1Q9NP99 234 aa10.62□□□□□ -0.71
CLK3-209ENST00000562670 SMPXQ9UHP9 88 aa10.62□□□□□ -0.71
CLK3-209ENST00000562670 ZNF320A2RRD8 509 aa10.61□□□□□ -0.71
CLK3-209ENST00000562670 GGTLC3B5MD39 225 aa10.61□□□□□ -0.71
CLK3-209ENST00000562670 C9JQL5 133 aa10.61□□□□□ -0.71
CLK3-209ENST00000562670 H3BQ15 152 aa10.61□□□□□ -0.71
CLK3-209ENST00000562670 SRP19P09132 144 aaKnown RBP10.61□□□□□ -0.71
CLK3-209ENST00000562670 SRSF2Q01130 221 aaKnown RBP10.61□□□□□ -0.71
CLK3-209ENST00000562670 DEFB136Q30KP8 78 aa10.61□□□□□ -0.71
CLK3-209ENST00000562670 C8orf86Q6ZUL3 223 aa10.61□□□□□ -0.71
CLK3-209ENST00000562670 RAX2Q96IS3 184 aa10.61□□□□□ -0.71
CLK3-209ENST00000562670 ZNF586Q9NXT0 402 aa10.61□□□□□ -0.71
CLK3-209ENST00000562670 PEMTQ9UBM1 199 aa10.61□□□□□ -0.71
CLK3-209ENST00000562670 NIPBLQ6KC79 2804 aaeCLIP10.61□□□□□ -0.71
CLK3-209ENST00000562670 HELTA6NFD8 242 aa10.6□□□□□ -0.71
CLK3-209ENST00000562670 CCL24O00175 119 aa10.6□□□□□ -0.71
CLK3-209ENST00000562670 APOHP02749 345 aaPredicted RBP10.6□□□□□ -0.71
CLK3-209ENST00000562670 SFTA3P0C7M3 94 aa10.6□□□□□ -0.71
CLK3-209ENST00000562670 ATF4P18848 351 aaPredicted RBP10.6□□□□□ -0.71
CLK3-209ENST00000562670 ATP5G3P48201 142 aa10.6□□□□□ -0.71
CLK3-209ENST00000562670 SYNJ2BPP57105 145 aa10.6□□□□□ -0.71
CLK3-209ENST00000562670 UBE2G2P60604 165 aa10.6□□□□□ -0.71
CLK3-209ENST00000562670 C10orf91Q5T1B1 145 aa10.6□□□□□ -0.71
CLK3-209ENST00000562670 SAMD13Q5VXD3 122 aa10.6□□□□□ -0.71
CLK3-209ENST00000562670 CST9LP1Q5W188 147 aa10.6□□□□□ -0.71
CLK3-209ENST00000562670 SIGLEC15Q6ZMC9 328 aa10.6□□□□□ -0.71
CLK3-209ENST00000562670 ARL6IP6Q8N6S5 226 aa10.6□□□□□ -0.71
CLK3-209ENST00000562670 SEC11CQ9BY50 192 aa10.6□□□□□ -0.71
CLK3-209ENST00000562670 OTORQ9NRC9 128 aa10.6□□□□□ -0.71
CLK3-209ENST00000562670 C2orf70A6NJV1 201 aa10.59□□□□□ -0.71
CLK3-209ENST00000562670 CHEK1O14757 476 aa10.59□□□□□ -0.71
CLK3-209ENST00000562670 ZNF207O43670 478 aaKnown RBP10.59□□□□□ -0.71
CLK3-209ENST00000562670 NDUFB4O95168 129 aa10.59□□□□□ -0.71
CLK3-209ENST00000562670 SLURP1P55000 103 aa10.59□□□□□ -0.71
CLK3-209ENST00000562670 KRTAP10-3P60369 221 aa10.59□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 88.9 ms