RNA–Protein interactions for RNA: ENST00000562298.1

VPS9D1-AS1-201, VPS9D1 antisense RNA 1, humanhuman

TSL 1 (best)

Gene VPS9D1-AS1, Length 931 nt, Biotype antisense RNA, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1-AS1-201ENST00000562298 MCFD2Q8NI22 146 aa11.8□□□□□ -0.52
VPS9D1-AS1-201ENST00000562298 TMED3Q9Y3Q3 217 aa11.8□□□□□ -0.52
VPS9D1-AS1-201ENST00000562298 NACAE9PAV3 2078 aa11.8□□□□□ -0.52
VPS9D1-AS1-201ENST00000562298 H3BP45 60 aa11.79□□□□□ -0.52
VPS9D1-AS1-201ENST00000562298 M0R2Z0 102 aa11.79□□□□□ -0.52
VPS9D1-AS1-201ENST00000562298 RPP30P78346 268 aaKnown RBP11.79□□□□□ -0.52
VPS9D1-AS1-201ENST00000562298 SPINK13Q1W4C9 94 aa11.79□□□□□ -0.52
VPS9D1-AS1-201ENST00000562298 TOMM5Q8N4H5 51 aa11.79□□□□□ -0.52
VPS9D1-AS1-201ENST00000562298 BPIFCQ8NFQ6 507 aa11.79□□□□□ -0.52
VPS9D1-AS1-201ENST00000562298 OR11H7Q8NGC8 314 aa11.79□□□□□ -0.52
VPS9D1-AS1-201ENST00000562298 OR1B1Q8NGR6 318 aa11.79□□□□□ -0.52
VPS9D1-AS1-201ENST00000562298 CIB3Q96Q77 187 aaPredicted RBP11.79□□□□□ -0.52
VPS9D1-AS1-201ENST00000562298 TMEM208Q9BTX3 173 aa11.79□□□□□ -0.52
VPS9D1-AS1-201ENST00000562298 V9GYH0 126 aa11.79□□□□□ -0.52
VPS9D1-AS1-201ENST00000562298 SFT2D2O95562 160 aa11.78□□□□□ -0.52
VPS9D1-AS1-201ENST00000562298 HOXB5P09067 269 aa11.78□□□□□ -0.52
VPS9D1-AS1-201ENST00000562298 SPANXN5Q5MJ07 72 aa11.78□□□□□ -0.52
VPS9D1-AS1-201ENST00000562298 ACOT7LQ6ZUV0 252 aa11.78□□□□□ -0.52
VPS9D1-AS1-201ENST00000562298 RNF182Q8N6D2 247 aa11.78□□□□□ -0.52
VPS9D1-AS1-201ENST00000562298 TMEM147Q9BVK8 224 aa11.78□□□□□ -0.52
VPS9D1-AS1-201ENST00000562298 HSPG2P98160 4391 aa11.77□□□□□ -0.52
VPS9D1-AS1-201ENST00000562298 ZNF705GA8MUZ8 300 aaPredicted RBP11.77□□□□□ -0.53
VPS9D1-AS1-201ENST00000562298 H3BRN7 92 aa11.77□□□□□ -0.53
VPS9D1-AS1-201ENST00000562298 INSP01308 110 aa11.77□□□□□ -0.53
VPS9D1-AS1-201ENST00000562298 AP3S2P59780 193 aa11.77□□□□□ -0.53
VPS9D1-AS1-201ENST00000562298 AKR1C1Q04828 323 aa11.77□□□□□ -0.53
VPS9D1-AS1-201ENST00000562298 PYDC2Q56P42 97 aa11.77□□□□□ -0.53
VPS9D1-AS1-201ENST00000562298 BAP18Q8IXM2 172 aa11.77□□□□□ -0.53
VPS9D1-AS1-201ENST00000562298 GPR82Q96P67 336 aa11.77□□□□□ -0.53
VPS9D1-AS1-201ENST00000562298 SLC25A21Q9BQT8 299 aaPredicted RBP11.77□□□□□ -0.53
VPS9D1-AS1-201ENST00000562298 PLAC8L1A1L4L8 177 aa11.76□□□□□ -0.53
VPS9D1-AS1-201ENST00000562298 NOL3O60936 208 aaKnown RBP11.76□□□□□ -0.53
VPS9D1-AS1-201ENST00000562298 DUSP14O95147 198 aaKnown RBP11.76□□□□□ -0.53
VPS9D1-AS1-201ENST00000562298 FGL1Q08830 312 aa11.76□□□□□ -0.53
VPS9D1-AS1-201ENST00000562298 ZNF575Q86XF7 245 aa11.76□□□□□ -0.53
VPS9D1-AS1-201ENST00000562298 SLC25A39Q9BZJ4 359 aaPredicted RBP11.76□□□□□ -0.53
VPS9D1-AS1-201ENST00000562298 TRAV12-2A0A075B6T6 113 aa11.75□□□□□ -0.53
VPS9D1-AS1-201ENST00000562298 LYRM9A8MSI8 78 aa11.75□□□□□ -0.53
VPS9D1-AS1-201ENST00000562298 SOHLH1Q5JUK2 328 aa11.75□□□□□ -0.53
VPS9D1-AS1-201ENST00000562298 C1orf134Q5TEV5 83 aa11.75□□□□□ -0.53
VPS9D1-AS1-201ENST00000562298 TMEM144Q7Z5S9 345 aa11.75□□□□□ -0.53
VPS9D1-AS1-201ENST00000562298 C15orf53Q8NAA6 179 aa11.75□□□□□ -0.53
VPS9D1-AS1-201ENST00000562298 SHANK2-AS3Q9BTD1 123 aa11.75□□□□□ -0.53
VPS9D1-AS1-201ENST00000562298 STRAPQ9Y3F4 350 aaKnown RBP11.75□□□□□ -0.53
VPS9D1-AS1-201ENST00000562298 PMS2P5A8MQ11 134 aa11.74□□□□□ -0.53
VPS9D1-AS1-201ENST00000562298 ADAP1O75689 374 aa11.74□□□□□ -0.53
VPS9D1-AS1-201ENST00000562298 AZU1P20160 251 aa11.74□□□□□ -0.53
VPS9D1-AS1-201ENST00000562298 TSPOP30536 169 aa11.74□□□□□ -0.53
VPS9D1-AS1-201ENST00000562298 POLR2GP62487 172 aaKnown RBP eCLIP11.74□□□□□ -0.53
VPS9D1-AS1-201ENST00000562298 FCN2Q15485 313 aa11.74□□□□□ -0.53
VPS9D1-AS1-201ENST00000562298 CYP2G1PQ6ZSU1 146 aa11.74□□□□□ -0.53
VPS9D1-AS1-201ENST00000562298 ZNF738Q8NE65 137 aa11.74□□□□□ -0.53
VPS9D1-AS1-201ENST00000562298 DEDD2Q8WXF8 326 aa11.74□□□□□ -0.53
VPS9D1-AS1-201ENST00000562298 SMCO3A2RU48 225 aa11.73□□□□□ -0.53
VPS9D1-AS1-201ENST00000562298 BOLA2-SMG1P6H3BVE0 249 aa11.73□□□□□ -0.53
VPS9D1-AS1-201ENST00000562298 IL5P05113 134 aa11.73□□□□□ -0.53
VPS9D1-AS1-201ENST00000562298 DEFB130BP0DP73 79 aa11.73□□□□□ -0.53
VPS9D1-AS1-201ENST00000562298 DEFB130AP0DP74 79 aa11.73□□□□□ -0.53
VPS9D1-AS1-201ENST00000562298 S100A7P31151 101 aa11.73□□□□□ -0.53
VPS9D1-AS1-201ENST00000562298 FAM3BP58499 235 aaPredicted RBP11.73□□□□□ -0.53
VPS9D1-AS1-201ENST00000562298 ID3Q02535 119 aa11.73□□□□□ -0.53
VPS9D1-AS1-201ENST00000562298 UHRF2Q96PU4 802 aa11.73□□□□□ -0.53
VPS9D1-AS1-201ENST00000562298 HIGD1AQ9Y241 93 aa11.73□□□□□ -0.53
VPS9D1-AS1-201ENST00000562298 CCNKO75909 580 aa11.72□□□□□ -0.53
VPS9D1-AS1-201ENST00000562298 LINC00869P0C866 280 aa11.72□□□□□ -0.53
VPS9D1-AS1-201ENST00000562298 PRB4P10163 310 aaPredicted RBP11.72□□□□□ -0.53
VPS9D1-AS1-201ENST00000562298 CXCL3P19876 107 aa11.72□□□□□ -0.53
VPS9D1-AS1-201ENST00000562298 PLP1P60201 277 aa11.72□□□□□ -0.53
VPS9D1-AS1-201ENST00000562298 RAP2BP61225 183 aa11.72□□□□□ -0.53
VPS9D1-AS1-201ENST00000562298 B2MP61769 119 aa11.72□□□□□ -0.53
VPS9D1-AS1-201ENST00000562298 KRTAP4-5Q9BYR2 181 aa11.72□□□□□ -0.53
VPS9D1-AS1-201ENST00000562298 LRP1BQ9NZR2 4599 aa11.71□□□□□ -0.53
VPS9D1-AS1-201ENST00000562298 A0A087X0K7 114 aa11.71□□□□□ -0.53
VPS9D1-AS1-201ENST00000562298 C9orf170A2RU37 121 aa11.71□□□□□ -0.53
VPS9D1-AS1-201ENST00000562298 SSSCA1O60232 199 aa11.71□□□□□ -0.53
VPS9D1-AS1-201ENST00000562298 HYPMO75409 117 aa11.71□□□□□ -0.53
VPS9D1-AS1-201ENST00000562298 RPL7P18124 248 aaKnown RBP11.71□□□□□ -0.53
VPS9D1-AS1-201ENST00000562298 HIST1H1AQ02539 215 aaPredicted RBP11.71□□□□□ -0.53
VPS9D1-AS1-201ENST00000562298 CCDC190Q86UF4 302 aa11.71□□□□□ -0.53
VPS9D1-AS1-201ENST00000562298 OR8A1Q8NGG7 326 aa11.71□□□□□ -0.53
VPS9D1-AS1-201ENST00000562298 ZNRF2Q8NHG8 242 aa11.71□□□□□ -0.53
VPS9D1-AS1-201ENST00000562298 ATG101Q9BSB4 218 aa11.71□□□□□ -0.53
VPS9D1-AS1-201ENST00000562298 PSENENQ9NZ42 101 aa11.71□□□□□ -0.53
VPS9D1-AS1-201ENST00000562298 F5H768 121 aa11.7□□□□□ -0.54
VPS9D1-AS1-201ENST00000562298 OR5G3P0C626 314 aa11.7□□□□□ -0.54
VPS9D1-AS1-201ENST00000562298 UBE2MP61081 183 aaKnown RBP11.7□□□□□ -0.54
VPS9D1-AS1-201ENST00000562298 RRAS2P62070 204 aaPredicted RBP11.7□□□□□ -0.54
VPS9D1-AS1-201ENST00000562298 TNP2Q05952 138 aa11.7□□□□□ -0.54
VPS9D1-AS1-201ENST00000562298 PATE2Q6UY27 113 aa11.7□□□□□ -0.54
VPS9D1-AS1-201ENST00000562298 MUC4Q99102 2169 aa11.69□□□□□ -0.54
VPS9D1-AS1-201ENST00000562298 NBDYA0A0U1RRE5 68 aa11.69□□□□□ -0.54
VPS9D1-AS1-201ENST00000562298 MRPS12O15235 138 aaKnown RBP11.69□□□□□ -0.54
VPS9D1-AS1-201ENST00000562298 NUDT3O95989 172 aa11.69□□□□□ -0.54
VPS9D1-AS1-201ENST00000562298 SELENOTP62341 195 aa11.69□□□□□ -0.54
VPS9D1-AS1-201ENST00000562298 RHOBP62745 196 aa11.69□□□□□ -0.54
VPS9D1-AS1-201ENST00000562298 TMEM256Q8N2U0 113 aa11.69□□□□□ -0.54
VPS9D1-AS1-201ENST00000562298 SMIM8Q96KF7 97 aa11.69□□□□□ -0.54
VPS9D1-AS1-201ENST00000562298 LINC01587Q99440 93 aa11.69□□□□□ -0.54
VPS9D1-AS1-201ENST00000562298 ARL6Q9H0F7 186 aa11.69□□□□□ -0.54
VPS9D1-AS1-201ENST00000562298 ATP5G1P05496 136 aa11.68□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 45.9 ms