RNA–Protein interactions for RNA: ENST00000562258.5

VPS39-205, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 4,160 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-205ENST00000562258 PSMG3Q9BT73 122 aaPredicted RBP7.33□□□□□ -1.24
VPS39-205ENST00000562258 ADAMTS20P59510 1910 aa7.33□□□□□ -1.24
VPS39-205ENST00000562258 IGHV7-81A0A0B4J1V7 117 aa7.33□□□□□ -1.24
VPS39-205ENST00000562258 FAM90A9PA6NNJ1 464 aa7.33□□□□□ -1.24
VPS39-205ENST00000562258 TRGV2A0A075B6R0 118 aa7.32□□□□□ -1.24
VPS39-205ENST00000562258 TMEM218A2RU14 115 aa7.32□□□□□ -1.24
VPS39-205ENST00000562258 LINC01619G3V211 115 aa7.32□□□□□ -1.24
VPS39-205ENST00000562258 S100A8P05109 93 aa7.32□□□□□ -1.24
VPS39-205ENST00000562258 RPL29P47914 159 aaKnown RBP7.32□□□□□ -1.24
VPS39-205ENST00000562258 TWIST1Q15672 202 aa7.32□□□□□ -1.24
VPS39-205ENST00000562258 AWAT1Q58HT5 328 aa7.32□□□□□ -1.24
VPS39-205ENST00000562258 PRSS57Q6UWY2 283 aa7.32□□□□□ -1.24
VPS39-205ENST00000562258 TOMM20LQ6UXN7 152 aa7.32□□□□□ -1.24
VPS39-205ENST00000562258 TMEM14EPQ6UXP3 125 aa7.32□□□□□ -1.24
VPS39-205ENST00000562258 PRSS3P2Q8NHM4 247 aa7.32□□□□□ -1.24
VPS39-205ENST00000562258 RAB19A4D1S5 217 aa7.32□□□□□ -1.24
VPS39-205ENST00000562258 LINC01548A6NM66 108 aa7.32□□□□□ -1.24
VPS39-205ENST00000562258 AVPP01185 164 aa7.32□□□□□ -1.24
VPS39-205ENST00000562258 IBA57Q5T440 356 aaKnown RBP7.32□□□□□ -1.24
VPS39-205ENST00000562258 Q8N9W7 124 aa7.32□□□□□ -1.24
VPS39-205ENST00000562258 PSMG3-AS1Q96PY0 264 aa7.32□□□□□ -1.24
VPS39-205ENST00000562258 TACC2O95359 2948 aa7.32□□□□□ -1.24
VPS39-205ENST00000562258 OR11H12B2RN74 326 aa7.32□□□□□ -1.24
VPS39-205ENST00000562258 FAM3BP58499 235 aaPredicted RBP7.32□□□□□ -1.24
VPS39-205ENST00000562258 BTF3L4Q96K17 158 aa7.32□□□□□ -1.24
VPS39-205ENST00000562258 MGST2Q99735 147 aa7.32□□□□□ -1.24
VPS39-205ENST00000562258 FOXC2Q99958 501 aa7.32□□□□□ -1.24
VPS39-205ENST00000562258 CCL24O00175 119 aa7.31□□□□□ -1.24
VPS39-205ENST00000562258 HSBP1O75506 76 aa7.31□□□□□ -1.24
VPS39-205ENST00000562258 SCO2A0A1W2PP80 73 aa7.31□□□□□ -1.24
VPS39-205ENST00000562258 FAM223BA6NKX1 122 aa7.31□□□□□ -1.24
VPS39-205ENST00000562258 FAM223AQ8IWN6 122 aa7.31□□□□□ -1.24
VPS39-205ENST00000562258 LOC102723971A0A1B0GUV8 181 aa7.31□□□□□ -1.24
VPS39-205ENST00000562258 IER3P46695 156 aa7.31□□□□□ -1.24
VPS39-205ENST00000562258 SLURP1P55000 103 aa7.31□□□□□ -1.24
VPS39-205ENST00000562258 CENPWQ5EE01 88 aa7.31□□□□□ -1.24
VPS39-205ENST00000562258 TCF23Q7RTU1 214 aa7.31□□□□□ -1.24
VPS39-205ENST00000562258 CBLN2Q8IUK8 224 aa7.31□□□□□ -1.24
VPS39-205ENST00000562258 Q8TAT8 98 aa7.31□□□□□ -1.24
VPS39-205ENST00000562258 PGLYRP4Q96LB8 373 aa7.31□□□□□ -1.24
VPS39-205ENST00000562258 CITED2Q99967 270 aaPredicted RBP7.31□□□□□ -1.24
VPS39-205ENST00000562258 PARLQ9H300 379 aa7.31□□□□□ -1.24
VPS39-205ENST00000562258 IGKV2-40A0A087WW87 121 aaPredicted RBP7.3□□□□□ -1.24
VPS39-205ENST00000562258 TRAV8-1A0A0A6YYK1 113 aa7.3□□□□□ -1.24
VPS39-205ENST00000562258 IGKV3OR2-268A0A0C4DH90 116 aa7.3□□□□□ -1.24
VPS39-205ENST00000562258 C7orf77A4D0Y5 90 aa7.3□□□□□ -1.24
VPS39-205ENST00000562258 PGPEP1LA6NFU8 196 aa7.3□□□□□ -1.24
VPS39-205ENST00000562258 A8MWL6 223 aa7.3□□□□□ -1.24
VPS39-205ENST00000562258 SNURFLB1AK76 121 aa7.3□□□□□ -1.24
VPS39-205ENST00000562258 IGKV2D-40P01614 121 aaPredicted RBP7.3□□□□□ -1.24
VPS39-205ENST00000562258 ELANEP08246 267 aa7.3□□□□□ -1.24
VPS39-205ENST00000562258 CD7P09564 240 aa7.3□□□□□ -1.24
VPS39-205ENST00000562258 FA2HQ7L5A8 372 aa7.3□□□□□ -1.24
VPS39-205ENST00000562258 RPP25LQ8N5L8 163 aaKnown RBP7.3□□□□□ -1.24
VPS39-205ENST00000562258 FAM210BQ96KR6 192 aa7.3□□□□□ -1.24
VPS39-205ENST00000562258 XCL2Q9UBD3 114 aa7.3□□□□□ -1.24
VPS39-205ENST00000562258 TRAPPC1Q9Y5R8 145 aa7.3□□□□□ -1.24
VPS39-205ENST00000562258 NPIPB5A8MRT5 1133 aa7.3□□□□□ -1.24
VPS39-205ENST00000562258 MEOX2P50222 304 aa7.3□□□□□ -1.24
VPS39-205ENST00000562258 S100A12P80511 92 aa7.3□□□□□ -1.24
VPS39-205ENST00000562258 C11orf42Q8N5U0 333 aa7.3□□□□□ -1.24
VPS39-205ENST00000562258 KMT2EQ8IZD2 1858 aa7.3□□□□□ -1.24
VPS39-205ENST00000562258 KALRNO60229 2985 aa7.3□□□□□ -1.24
VPS39-205ENST00000562258 PPP1R2P9O14990 202 aa7.3□□□□□ -1.24
VPS39-205ENST00000562258 PROP1O75360 226 aa7.3□□□□□ -1.24
VPS39-205ENST00000562258 HOXD3P31249 432 aaPredicted RBP7.3□□□□□ -1.24
VPS39-205ENST00000562258 NEU1Q99519 415 aa7.3□□□□□ -1.24
VPS39-205ENST00000562258 CD5LO43866 347 aa7.3□□□□□ -1.24
VPS39-205ENST00000562258 BATFQ16520 125 aa7.3□□□□□ -1.24
VPS39-205ENST00000562258 LOC389332A0A1B0GUA5 103 aa7.29□□□□□ -1.24
VPS39-205ENST00000562258 PEX7O00628 323 aa7.29□□□□□ -1.24
VPS39-205ENST00000562258 CCL20P78556 96 aa7.29□□□□□ -1.24
VPS39-205ENST00000562258 FNDC4Q9H6D8 234 aaPredicted RBP7.29□□□□□ -1.24
VPS39-205ENST00000562258 TNRC6BQ9UPQ9 1833 aaKnown RBP7.29□□□□□ -1.24
VPS39-205ENST00000562258 PMCHP20382 165 aa7.29□□□□□ -1.24
VPS39-205ENST00000562258 FAM209BQ5JX69 171 aa7.29□□□□□ -1.24
VPS39-205ENST00000562258 SAPCD1Q5SSQ6 148 aa7.29□□□□□ -1.24
VPS39-205ENST00000562258 RNASEKQ6P5S7 137 aaKnown RBP7.29□□□□□ -1.24
VPS39-205ENST00000562258 DPPA3Q6W0C5 159 aa7.29□□□□□ -1.24
VPS39-205ENST00000562258 TMEM158Q8WZ71 300 aa7.29□□□□□ -1.24
VPS39-205ENST00000562258 TSSC4Q9Y5U2 329 aaPredicted RBP7.29□□□□□ -1.24
VPS39-205ENST00000562258 IGLC7A0M8Q6 106 aa7.29□□□□□ -1.24
VPS39-205ENST00000562258 E7EUB6 86 aa7.29□□□□□ -1.24
VPS39-205ENST00000562258 RIGQ13278 110 aa7.29□□□□□ -1.24
VPS39-205ENST00000562258 ZNF56Q15929 161 aa7.29□□□□□ -1.24
VPS39-205ENST00000562258 CRIP3Q6Q6R5 217 aa7.29□□□□□ -1.24
VPS39-205ENST00000562258 RNF182Q8N6D2 247 aa7.29□□□□□ -1.24
VPS39-205ENST00000562258 C5orf56Q8N8D9 126 aa7.29□□□□□ -1.24
VPS39-205ENST00000562258 TRGV9Q99603 122 aa7.29□□□□□ -1.24
VPS39-205ENST00000562258 HSBP1L1C9JCN9 74 aa7.28□□□□□ -1.24
VPS39-205ENST00000562258 TNFRSF13BO14836 293 aaPredicted RBP7.28□□□□□ -1.24
VPS39-205ENST00000562258 UQCC3Q6UW78 93 aa7.28□□□□□ -1.24
VPS39-205ENST00000562258 SLC50A1Q9BRV3 221 aa7.28□□□□□ -1.24
VPS39-205ENST00000562258 NIT2Q9NQR4 276 aa7.28□□□□□ -1.24
VPS39-205ENST00000562258 ANAPC10Q9UM13 185 aa7.28□□□□□ -1.24
VPS39-205ENST00000562258 TRAV12-3A0A0B4J271 114 aa7.28□□□□□ -1.24
VPS39-205ENST00000562258 CLPSL1A2RUU4 121 aa7.28□□□□□ -1.24
VPS39-205ENST00000562258 SCGB1D1O95968 90 aa7.28□□□□□ -1.24
VPS39-205ENST00000562258 RNF212Q495C1 297 aa7.28□□□□□ -1.24
VPS39-205ENST00000562258 Q6ZPA2 131 aa7.28□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms