RNA–Protein interactions for RNA: ENST00000560637.5

VPS13C-209, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 1 (best)

Gene VPS13C, Length 3,684 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-209ENST00000560637 RAB19A4D1S5 217 aa4.27□□□□□ -1.73
VPS13C-209ENST00000560637 GRIFINA4D1Z8 144 aa4.27□□□□□ -1.73
VPS13C-209ENST00000560637 ZNF98A6NK75 572 aa4.27□□□□□ -1.73
VPS13C-209ENST00000560637 C9JCJ5 164 aa4.27□□□□□ -1.73
VPS13C-209ENST00000560637 SNAPINO95295 136 aa4.27□□□□□ -1.73
VPS13C-209ENST00000560637 IGKV2D-40P01614 121 aaPredicted RBP4.27□□□□□ -1.73
VPS13C-209ENST00000560637 MT-ND4LP03901 98 aa4.27□□□□□ -1.73
VPS13C-209ENST00000560637 GPX1P07203 203 aa4.27□□□□□ -1.73
VPS13C-209ENST00000560637 BCL2P10415 239 aa4.27□□□□□ -1.73
VPS13C-209ENST00000560637 CD28P10747 220 aa4.27□□□□□ -1.73
VPS13C-209ENST00000560637 SNRPD3P62318 126 aaKnown RBP4.27□□□□□ -1.73
VPS13C-209ENST00000560637 MEF2BQ02080 365 aaPredicted RBP4.27□□□□□ -1.73
VPS13C-209ENST00000560637 AANATQ16613 207 aa4.27□□□□□ -1.73
VPS13C-209ENST00000560637 BSXQ3C1V8 233 aa4.27□□□□□ -1.73
VPS13C-209ENST00000560637 ACTL10Q5JWF8 245 aa4.27□□□□□ -1.73
VPS13C-209ENST00000560637 CLLU1Q5K131 121 aa4.27□□□□□ -1.73
VPS13C-209ENST00000560637 LINC00479Q96M42 142 aa4.27□□□□□ -1.73
VPS13C-209ENST00000560637 ELOA3CA0A087WX78 387 aaPredicted RBP4.27□□□□□ -1.73
VPS13C-209ENST00000560637 ZNF705FA8MVS1 300 aaPredicted RBP4.27□□□□□ -1.73
VPS13C-209ENST00000560637 TNFRSF13BO14836 293 aaPredicted RBP4.27□□□□□ -1.73
VPS13C-209ENST00000560637 FGF16O43320 207 aa4.27□□□□□ -1.73
VPS13C-209ENST00000560637 IGLV2-23P01705 113 aa4.27□□□□□ -1.73
VPS13C-209ENST00000560637 PRB2P02812 416 aaPredicted RBP4.27□□□□□ -1.73
VPS13C-209ENST00000560637 CTRB1P17538 263 aa4.27□□□□□ -1.73
VPS13C-209ENST00000560637 TCTEX1D4Q5JR98 221 aa4.27□□□□□ -1.73
VPS13C-209ENST00000560637 CTRB2Q6GPI1 263 aa4.27□□□□□ -1.73
VPS13C-209ENST00000560637 FAM71F2Q6NXP2 309 aa4.27□□□□□ -1.73
VPS13C-209ENST00000560637 PRSS57Q6UWY2 283 aa4.27□□□□□ -1.73
VPS13C-209ENST00000560637 C18orf65Q6ZTR6 163 aa4.27□□□□□ -1.73
VPS13C-209ENST00000560637 OR2D3Q8NGH3 330 aa4.27□□□□□ -1.73
VPS13C-209ENST00000560637 ZNF48Q96MX3 618 aaPredicted RBP4.27□□□□□ -1.73
VPS13C-209ENST00000560637 SLC35B3Q9H1N7 401 aa4.27□□□□□ -1.73
VPS13C-209ENST00000560637 VAX2Q9UIW0 290 aa4.27□□□□□ -1.73
VPS13C-209ENST00000560637 A8MXK9 166 aa4.27□□□□□ -1.73
VPS13C-209ENST00000560637 ODF3BA8MYP8 253 aa4.27□□□□□ -1.73
VPS13C-209ENST00000560637 SEC14L6B5MCN3 397 aa4.27□□□□□ -1.73
VPS13C-209ENST00000560637 HLA-DMBP28068 263 aa4.27□□□□□ -1.73
VPS13C-209ENST00000560637 HOXD3P31249 432 aaPredicted RBP4.27□□□□□ -1.73
VPS13C-209ENST00000560637 GPX4P36969 197 aaPredicted RBP4.27□□□□□ -1.73
VPS13C-209ENST00000560637 DEFB131AP59861 70 aa4.27□□□□□ -1.73
VPS13C-209ENST00000560637 SRSF3P84103 164 aaKnown RBP4.27□□□□□ -1.73
VPS13C-209ENST00000560637 TMEM241Q24JQ0 296 aa4.27□□□□□ -1.73
VPS13C-209ENST00000560637 PUSL1Q8N0Z8 303 aaKnown RBP4.27□□□□□ -1.73
VPS13C-209ENST00000560637 SUN5Q8TC36 379 aa4.27□□□□□ -1.73
VPS13C-209ENST00000560637 CFHR4Q92496 578 aa4.27□□□□□ -1.73
VPS13C-209ENST00000560637 SRD5A3Q9H8P0 318 aa4.27□□□□□ -1.73
VPS13C-209ENST00000560637 F6UB75 175 aa4.26□□□□□ -1.73
VPS13C-209ENST00000560637 CSN3P07498 182 aa4.26□□□□□ -1.73
VPS13C-209ENST00000560637 FAM74A4Q5TZK3 123 aa4.26□□□□□ -1.73
VPS13C-209ENST00000560637 Q6ZSV7 163 aa4.26□□□□□ -1.73
VPS13C-209ENST00000560637 TMEM116Q8NCL8 245 aa4.26□□□□□ -1.73
VPS13C-209ENST00000560637 PHYHIPLQ96FC7 376 aa4.26□□□□□ -1.73
VPS13C-209ENST00000560637 AJUBAQ96IF1 538 aa4.26□□□□□ -1.73
VPS13C-209ENST00000560637 Q9H3A6 140 aa4.26□□□□□ -1.73
VPS13C-209ENST00000560637 PEMTQ9UBM1 199 aa4.26□□□□□ -1.73
VPS13C-209ENST00000560637 NF1P21359 2839 aa4.26□□□□□ -1.73
VPS13C-209ENST00000560637 FAM90A9PA6NNJ1 464 aa4.26□□□□□ -1.73
VPS13C-209ENST00000560637 CHEK1O14757 476 aa4.26□□□□□ -1.73
VPS13C-209ENST00000560637 GATCO43716 136 aaKnown RBP4.26□□□□□ -1.73
VPS13C-209ENST00000560637 S100A2P29034 98 aa4.26□□□□□ -1.73
VPS13C-209ENST00000560637 SIGLEC15Q6ZMC9 328 aa4.26□□□□□ -1.73
VPS13C-209ENST00000560637 CBLN2Q8IUK8 224 aa4.26□□□□□ -1.73
VPS13C-209ENST00000560637 FAM24BQ8N5W8 94 aa4.26□□□□□ -1.73
VPS13C-209ENST00000560637 C17orf77Q96MU5 243 aa4.26□□□□□ -1.73
VPS13C-209ENST00000560637 RNF2Q99496 336 aa4.26□□□□□ -1.73
VPS13C-209ENST00000560637 CTDSP1Q9GZU7 261 aa4.26□□□□□ -1.73
VPS13C-209ENST00000560637 CYTL1Q9NRR1 136 aa4.26□□□□□ -1.73
VPS13C-209ENST00000560637 IGHV4OR15-8A0A075B7B6 117 aa4.26□□□□□ -1.73
VPS13C-209ENST00000560637 A0A087WW49 117 aa4.26□□□□□ -1.73
VPS13C-209ENST00000560637 A6NDX4 124 aa4.26□□□□□ -1.73
VPS13C-209ENST00000560637 CCL24O00175 119 aa4.26□□□□□ -1.73
VPS13C-209ENST00000560637 HIST1H1EP10412 219 aaKnown RBP4.26□□□□□ -1.73
VPS13C-209ENST00000560637 FAM3BP58499 235 aaPredicted RBP4.26□□□□□ -1.73
VPS13C-209ENST00000560637 USF2Q15853 346 aaPredicted RBP4.26□□□□□ -1.73
VPS13C-209ENST00000560637 SMIM15Q7Z3B0 74 aa4.26□□□□□ -1.73
VPS13C-209ENST00000560637 ARL6IP6Q8N6S5 226 aa4.26□□□□□ -1.73
VPS13C-209ENST00000560637 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP4.26□□□□□ -1.73
VPS13C-209ENST00000560637 C2CD4CQ8TF44 421 aa4.26□□□□□ -1.73
VPS13C-209ENST00000560637 DERL1Q9BUN8 251 aa4.26□□□□□ -1.73
VPS13C-209ENST00000560637 ZNF331Q9NQX6 463 aaPredicted RBP4.26□□□□□ -1.73
VPS13C-209ENST00000560637 VWC2LB2RUY7 222 aa4.25□□□□□ -1.73
VPS13C-209ENST00000560637 H3BQ15 152 aa4.25□□□□□ -1.73
VPS13C-209ENST00000560637 CA1P00915 261 aaPredicted RBP4.25□□□□□ -1.73
VPS13C-209ENST00000560637 P01737 135 aa4.25□□□□□ -1.73
VPS13C-209ENST00000560637 MGPP08493 103 aa4.25□□□□□ -1.73
VPS13C-209ENST00000560637 RNASE4P34096 147 aaKnown RBP4.25□□□□□ -1.73
VPS13C-209ENST00000560637 FABP9Q0Z7S8 132 aa4.25□□□□□ -1.73
VPS13C-209ENST00000560637 AWAT1Q58HT5 328 aa4.25□□□□□ -1.73
VPS13C-209ENST00000560637 PVRIGQ6DKI7 326 aa4.25□□□□□ -1.73
VPS13C-209ENST00000560637 UNQ9165/PRO28630Q6UXU0 137 aa4.25□□□□□ -1.73
VPS13C-209ENST00000560637 ZFAND3Q9H8U3 227 aa4.25□□□□□ -1.73
VPS13C-209ENST00000560637 DAZ1Q9NQZ3 744 aaKnown RBP4.25□□□□□ -1.73
VPS13C-209ENST00000560637 A0A087X0M5 115 aa4.25□□□□□ -1.73
VPS13C-209ENST00000560637 A0A1B0GX30 115 aa4.25□□□□□ -1.73
VPS13C-209ENST00000560637 TEX22C9J3V5 150 aa4.25□□□□□ -1.73
VPS13C-209ENST00000560637 LINC01619G3V211 115 aa4.25□□□□□ -1.73
VPS13C-209ENST00000560637 K7EIM0 57 aa4.25□□□□□ -1.73
VPS13C-209ENST00000560637 SLC17A3O00476 420 aa4.25□□□□□ -1.73
VPS13C-209ENST00000560637 OVOL1O14753 267 aa4.25□□□□□ -1.73
VPS13C-209ENST00000560637 RGS13O14921 159 aa4.25□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 49.7 ms