RNA–Protein interactions for RNA: ENST00000560445.1

TPM1-223, Transcript of tropomyosin 1, human

TSL 3 BASIC

Gene TPM1, Length 485 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TPM1-223	ENST00000560445	NPVF	Q9HCQ7	196 aa		10.17	□□□□□ -0.78
TPM1-223	ENST00000560445	IGHV4-4	A0A075B6R2	117 aa		10.16	□□□□□ -0.78
TPM1-223	ENST00000560445	ELOA3C	A0A087WX78	387 aa	Predicted RBP	10.16	□□□□□ -0.78
TPM1-223	ENST00000560445		A0A0J9YX75	114 aa		10.16	□□□□□ -0.78
TPM1-223	ENST00000560445		K7EPK0	472 aa		10.16	□□□□□ -0.78
TPM1-223	ENST00000560445		L7N2F9	121 aa		10.16	□□□□□ -0.78
TPM1-223	ENST00000560445	IGKV3-20	P01619	116 aa		10.16	□□□□□ -0.78
TPM1-223	ENST00000560445	LINC00869	P0C866	280 aa		10.16	□□□□□ -0.78
TPM1-223	ENST00000560445	BTC	P35070	178 aa		10.16	□□□□□ -0.78
TPM1-223	ENST00000560445	VAMP2	P63027	116 aa		10.16	□□□□□ -0.78
TPM1-223	ENST00000560445	RAB31	Q13636	194 aa		10.16	□□□□□ -0.78
TPM1-223	ENST00000560445	FAM78B	Q5VT40	261 aa		10.16	□□□□□ -0.78
TPM1-223	ENST00000560445	TEPP	Q6URK8	271 aa		10.16	□□□□□ -0.78
TPM1-223	ENST00000560445	S100Z	Q8WXG8	99 aa		10.16	□□□□□ -0.78
TPM1-223	ENST00000560445	TMEM208	Q9BTX3	173 aa		10.16	□□□□□ -0.78
TPM1-223	ENST00000560445	NDUFAF3	Q9BU61	184 aa		10.16	□□□□□ -0.78
TPM1-223	ENST00000560445	IGHV3OR16-12	A0A075B7B8	117 aa		10.15	□□□□□ -0.78
TPM1-223	ENST00000560445	PLA2G10	O15496	165 aa		10.15	□□□□□ -0.78
TPM1-223	ENST00000560445	INS	P01308	110 aa		10.15	□□□□□ -0.78
TPM1-223	ENST00000560445	TCRB	P04435	133 aa		10.15	□□□□□ -0.78
TPM1-223	ENST00000560445	OR5G3	P0C626	314 aa		10.15	□□□□□ -0.78
TPM1-223	ENST00000560445		P0DMU3	169 aa		10.15	□□□□□ -0.78
TPM1-223	ENST00000560445	FAM231A	P0DMU4	169 aa		10.15	□□□□□ -0.78
TPM1-223	ENST00000560445	FAM231C	P0DMU5	169 aa		10.15	□□□□□ -0.78
TPM1-223	ENST00000560445	PLP1	P60201	277 aa		10.15	□□□□□ -0.78
TPM1-223	ENST00000560445	MZT2B	Q6NZ67	158 aa		10.15	□□□□□ -0.78
TPM1-223	ENST00000560445	LRRC20	Q8TCA0	184 aa		10.15	□□□□□ -0.78
TPM1-223	ENST00000560445	SHANK2-AS3	Q9BTD1	123 aa		10.15	□□□□□ -0.78
TPM1-223	ENST00000560445	SLC25A39	Q9BZJ4	359 aa	Predicted RBP	10.15	□□□□□ -0.78
TPM1-223	ENST00000560445	APLN	Q9ULZ1	77 aa		10.15	□□□□□ -0.78
TPM1-223	ENST00000560445		H3BRN7	92 aa		10.14	□□□□□ -0.79
TPM1-223	ENST00000560445	GOSR2	O14653	212 aa		10.14	□□□□□ -0.79
TPM1-223	ENST00000560445	METTL15P1	P0C7V9	234 aa		10.14	□□□□□ -0.79
TPM1-223	ENST00000560445	CXCL2	P19875	107 aa		10.14	□□□□□ -0.79
TPM1-223	ENST00000560445	PVALB	P20472	110 aa	Predicted RBP	10.14	□□□□□ -0.79
TPM1-223	ENST00000560445	RRN3P1	Q2M238	152 aa		10.14	□□□□□ -0.79
TPM1-223	ENST00000560445	GDF5OS	Q5U4N7	250 aa		10.14	□□□□□ -0.79
TPM1-223	ENST00000560445	TMEM14EP	Q6UXP3	125 aa		10.14	□□□□□ -0.79
TPM1-223	ENST00000560445	RPP25L	Q8N5L8	163 aa	Known RBP	10.14	□□□□□ -0.79
TPM1-223	ENST00000560445	ZNF709	Q8N972	641 aa		10.14	□□□□□ -0.79
TPM1-223	ENST00000560445	ZBTB8B	Q8NAP8	495 aa	Predicted RBP	10.14	□□□□□ -0.79
TPM1-223	ENST00000560445	ZNF738	Q8NE65	137 aa		10.14	□□□□□ -0.79
TPM1-223	ENST00000560445	IGF2BP2-AS1	Q96M15	143 aa		10.14	□□□□□ -0.79
TPM1-223	ENST00000560445	PPP1R14D	Q9NXH3	145 aa		10.14	□□□□□ -0.79
TPM1-223	ENST00000560445	TRAV6	A0A075B6T7	132 aa		10.13	□□□□□ -0.79
TPM1-223	ENST00000560445	FAM240B	A0A1B0GVZ2	78 aa		10.13	□□□□□ -0.79
TPM1-223	ENST00000560445	FAM25E	A8MYX2	175 aa		10.13	□□□□□ -0.79
TPM1-223	ENST00000560445	FGL1	Q08830	312 aa		10.13	□□□□□ -0.79
TPM1-223	ENST00000560445	OXA1L	Q15070	435 aa		10.13	□□□□□ -0.79
TPM1-223	ENST00000560445	C12orf74	Q32Q52	190 aa		10.13	□□□□□ -0.79
TPM1-223	ENST00000560445	NIPSNAP3B	Q9BS92	247 aa		10.13	□□□□□ -0.79
TPM1-223	ENST00000560445	SCRT1	Q9BWW7	348 aa		10.13	□□□□□ -0.79
TPM1-223	ENST00000560445	NUDT15	Q9NV35	164 aa		10.13	□□□□□ -0.79
TPM1-223	ENST00000560445	HYDIN	Q4G0P3	5121 aa		10.13	□□□□□ -0.79
TPM1-223	ENST00000560445	BIRC6	Q9NR09	4857 aa		10.12	□□□□□ -0.79
TPM1-223	ENST00000560445		A0A087X0K7	114 aa		10.12	□□□□□ -0.79
TPM1-223	ENST00000560445	LOC102723971	A0A1B0GUV8	181 aa		10.12	□□□□□ -0.79
TPM1-223	ENST00000560445	C5orf51	A6NDU8	294 aa		10.12	□□□□□ -0.79
TPM1-223	ENST00000560445		A8MTW9	85 aa		10.12	□□□□□ -0.79
TPM1-223	ENST00000560445	DEDD	O75618	318 aa		10.12	□□□□□ -0.79
TPM1-223	ENST00000560445	H2AFB2	P0C5Z0	115 aa		10.12	□□□□□ -0.79
TPM1-223	ENST00000560445	GATA2	P23769	480 aa	Predicted RBP	10.12	□□□□□ -0.79
TPM1-223	ENST00000560445	EMP1	P54849	157 aa		10.12	□□□□□ -0.79
TPM1-223	ENST00000560445	RRAS2	P62070	204 aa	Predicted RBP	10.12	□□□□□ -0.79
TPM1-223	ENST00000560445	UNQ5830/PRO19650/PRO19816	Q6UY13	95 aa		10.12	□□□□□ -0.79
TPM1-223	ENST00000560445	TMEM256	Q8N2U0	113 aa		10.12	□□□□□ -0.79
TPM1-223	ENST00000560445	ZNF431	Q8TF32	576 aa	Predicted RBP	10.12	□□□□□ -0.79
TPM1-223	ENST00000560445	EPPK1	P58107	5090 aa	Known RBP	10.11	□□□□□ -0.79
TPM1-223	ENST00000560445	COX7A2P2	O60397	106 aa		10.11	□□□□□ -0.79
TPM1-223	ENST00000560445	BCAP31	P51572	246 aa		10.11	□□□□□ -0.79
TPM1-223	ENST00000560445	FXYD7	P58549	80 aa		10.11	□□□□□ -0.79
TPM1-223	ENST00000560445	LCN15	Q6UWW0	184 aa		10.11	□□□□□ -0.79
TPM1-223	ENST00000560445	C12orf45	Q8N5I9	185 aa	Predicted RBP	10.11	□□□□□ -0.79
TPM1-223	ENST00000560445	SLC50A1	Q9BRV3	221 aa		10.11	□□□□□ -0.79
TPM1-223	ENST00000560445	ARL6	Q9H0F7	186 aa		10.11	□□□□□ -0.79
TPM1-223	ENST00000560445	SLC35B3	Q9H1N7	401 aa		10.11	□□□□□ -0.79
TPM1-223	ENST00000560445	ARV1	Q9H2C2	271 aa		10.11	□□□□□ -0.79
TPM1-223	ENST00000560445	DKK2	Q9UBU2	259 aa		10.11	□□□□□ -0.79
TPM1-223	ENST00000560445	CELA1	Q9UNI1	258 aa		10.11	□□□□□ -0.79
TPM1-223	ENST00000560445	C7orf66	A4D0T2	115 aa		10.1	□□□□□ -0.79
TPM1-223	ENST00000560445	PMS2P5	A8MQ11	134 aa		10.1	□□□□□ -0.79
TPM1-223	ENST00000560445		F6UB75	175 aa		10.1	□□□□□ -0.79
TPM1-223	ENST00000560445	BOLA2-SMG1P6	H3BVE0	249 aa		10.1	□□□□□ -0.79
TPM1-223	ENST00000560445	MBP	P02686	304 aa	Predicted RBP	10.1	□□□□□ -0.79
TPM1-223	ENST00000560445	CNN1	P51911	297 aa	Known RBP	10.1	□□□□□ -0.79
TPM1-223	ENST00000560445	HBG1	P69891	147 aa		10.1	□□□□□ -0.79
TPM1-223	ENST00000560445	HBG2	P69892	147 aa		10.1	□□□□□ -0.79
TPM1-223	ENST00000560445	GSG1L	Q6UXU4	331 aa		10.1	□□□□□ -0.79
TPM1-223	ENST00000560445		Q6ZRG5	221 aa		10.1	□□□□□ -0.79
TPM1-223	ENST00000560445	STX12	Q86Y82	276 aa		10.1	□□□□□ -0.79
TPM1-223	ENST00000560445	BPIFA4P	Q86YQ2	179 aa		10.1	□□□□□ -0.79
TPM1-223	ENST00000560445	RCL1	Q9Y2P8	373 aa	Known RBP	10.1	□□□□□ -0.79
TPM1-223	ENST00000560445	LYRM9	A8MSI8	78 aa		10.09	□□□□□ -0.79
TPM1-223	ENST00000560445	CCS	O14618	274 aa		10.09	□□□□□ -0.79
TPM1-223	ENST00000560445	AGPAT2	O15120	278 aa		10.09	□□□□□ -0.79
TPM1-223	ENST00000560445	CAV2	P51636	162 aa		10.09	□□□□□ -0.79
TPM1-223	ENST00000560445	DAD1	P61803	113 aa		10.09	□□□□□ -0.79
TPM1-223	ENST00000560445	RHOB	P62745	196 aa		10.09	□□□□□ -0.79
TPM1-223	ENST00000560445	SLC38A11	Q08AI6	406 aa		10.09	□□□□□ -0.79
TPM1-223	ENST00000560445	FAM222A	Q5U5X8	452 aa		10.09	□□□□□ -0.79

Retrieved 100 of 20,778 RNA–protein pairs in 71.4 ms