RNA–Protein interactions for RNA: ENST00000559844.5

SNX1-208, Transcript of sorting nexin 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SNX1, Length 1,971 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-208ENST00000559844 MEGF9Q9H1U4 602 aa13.91□□□□□ -0.18
SNX1-208ENST00000559844 KLK9Q9UKQ9 250 aa13.91□□□□□ -0.18
SNX1-208ENST00000559844 H3BRN7 92 aa13.91□□□□□ -0.18
SNX1-208ENST00000559844 NDUFB8O95169 186 aa13.91□□□□□ -0.18
SNX1-208ENST00000559844 HIST1H1EP10412 219 aaKnown RBP13.91□□□□□ -0.18
SNX1-208ENST00000559844 FCGR2BP31994 310 aaPredicted RBP13.91□□□□□ -0.18
SNX1-208ENST00000559844 ERVFC1-1P60608 527 aa13.91□□□□□ -0.18
SNX1-208ENST00000559844 IL36BQ9NZH7 164 aa13.91□□□□□ -0.18
SNX1-208ENST00000559844 EPDR1Q9UM22 224 aa13.91□□□□□ -0.18
SNX1-208ENST00000559844 MOB4Q9Y3A3 225 aa13.91□□□□□ -0.18
SNX1-208ENST00000559844 HIST1H2BKO60814 126 aa13.9□□□□□ -0.18
SNX1-208ENST00000559844 OR2J3O76001 311 aa13.9□□□□□ -0.18
SNX1-208ENST00000559844 SLC25A5P05141 298 aaKnown RBP13.9□□□□□ -0.18
SNX1-208ENST00000559844 HIST1H2BJP06899 126 aa13.9□□□□□ -0.18
SNX1-208ENST00000559844 HIST1H2BOP23527 126 aa13.9□□□□□ -0.18
SNX1-208ENST00000559844 HIST1H2BBP33778 126 aa13.9□□□□□ -0.18
SNX1-208ENST00000559844 HIST1H2BDP58876 126 aa13.9□□□□□ -0.18
SNX1-208ENST00000559844 HIST1H2BCP62807 126 aa13.9□□□□□ -0.18
SNX1-208ENST00000559844 HIST2H2BEQ16778 126 aa13.9□□□□□ -0.18
SNX1-208ENST00000559844 HIST2H2BFQ5QNW6 126 aaPredicted RBP13.9□□□□□ -0.18
SNX1-208ENST00000559844 ZNF600Q6ZNG1 722 aa13.9□□□□□ -0.18
SNX1-208ENST00000559844 C5orf56Q8N8D9 126 aa13.9□□□□□ -0.18
SNX1-208ENST00000559844 HIST1H2BHQ93079 126 aa13.9□□□□□ -0.18
SNX1-208ENST00000559844 HIST1H2BNQ99877 126 aa13.9□□□□□ -0.18
SNX1-208ENST00000559844 HIST1H2BMQ99879 126 aa13.9□□□□□ -0.18
SNX1-208ENST00000559844 OSTCQ9NRP0 149 aa13.9□□□□□ -0.18
SNX1-208ENST00000559844 FBXL7Q9UJT9 491 aa13.9□□□□□ -0.18
SNX1-208ENST00000559844 PGPA6NDG6 321 aa13.89□□□□□ -0.19
SNX1-208ENST00000559844 ATP6V0E1O15342 81 aa13.89□□□□□ -0.19
SNX1-208ENST00000559844 IL4P05112 153 aa13.89□□□□□ -0.19
SNX1-208ENST00000559844 S100A9P06702 114 aaKnown RBP13.89□□□□□ -0.19
SNX1-208ENST00000559844 TRGC1P0CF51 173 aa13.89□□□□□ -0.19
SNX1-208ENST00000559844 NDUFA6P56556 154 aa13.89□□□□□ -0.19
SNX1-208ENST00000559844 LEMD1Q68G75 181 aa13.89□□□□□ -0.19
SNX1-208ENST00000559844 BPIFA4PQ86YQ2 179 aa13.89□□□□□ -0.19
SNX1-208ENST00000559844 SIGLECL1Q8N7X8 197 aa13.89□□□□□ -0.19
SNX1-208ENST00000559844 C5orf17Q8NAS9 161 aa13.89□□□□□ -0.19
SNX1-208ENST00000559844 FRZBQ92765 325 aa13.89□□□□□ -0.19
SNX1-208ENST00000559844 F8W735 103 aaPredicted RBP13.89□□□□□ -0.19
SNX1-208ENST00000559844 PHOX2AO14813 284 aa13.89□□□□□ -0.19
SNX1-208ENST00000559844 LINC00518Q8N0U6 118 aa13.89□□□□□ -0.19
SNX1-208ENST00000559844 S4R3C0 116 aa13.89□□□□□ -0.19
SNX1-208ENST00000559844 ISLRO14498 428 aa13.88□□□□□ -0.19
SNX1-208ENST00000559844 IGLV2-8P01709 118 aa13.88□□□□□ -0.19
SNX1-208ENST00000559844 S100A8P05109 93 aa13.88□□□□□ -0.19
SNX1-208ENST00000559844 HOXA5P20719 270 aa13.88□□□□□ -0.19
SNX1-208ENST00000559844 ECSCRQ19T08 205 aa13.88□□□□□ -0.19
SNX1-208ENST00000559844 TMEM183BQ1AE95 376 aa13.88□□□□□ -0.19
SNX1-208ENST00000559844 Q6YL49 198 aa13.88□□□□□ -0.19
SNX1-208ENST00000559844 OTORQ9NRC9 128 aa13.88□□□□□ -0.19
SNX1-208ENST00000559844 ZNF320A2RRD8 509 aa13.87□□□□□ -0.19
SNX1-208ENST00000559844 S100A7P31151 101 aa13.87□□□□□ -0.19
SNX1-208ENST00000559844 UBE2G1P62253 170 aa13.87□□□□□ -0.19
SNX1-208ENST00000559844 OR5I1Q13606 314 aa13.87□□□□□ -0.19
SNX1-208ENST00000559844 RPEL1Q2QD12 228 aa13.87□□□□□ -0.19
SNX1-208ENST00000559844 OR4F17Q8NGA8 305 aa13.87□□□□□ -0.19
SNX1-208ENST00000559844 SMIM12Q96EX1 92 aa13.87□□□□□ -0.19
SNX1-208ENST00000559844 ATG101Q9BSB4 218 aa13.87□□□□□ -0.19
SNX1-208ENST00000559844 Q9H3A6 140 aa13.87□□□□□ -0.19
SNX1-208ENST00000559844 PRDM13Q9H4Q3 707 aa13.87□□□□□ -0.19
SNX1-208ENST00000559844 H3BUX3 64 aa13.87□□□□□ -0.19
SNX1-208ENST00000559844 BAGE2Q86Y30 109 aa13.87□□□□□ -0.19
SNX1-208ENST00000559844 V9GYV3 84 aa13.87□□□□□ -0.19
SNX1-208ENST00000559844 IGHV4-59P01825 116 aa13.86□□□□□ -0.19
SNX1-208ENST00000559844 MGST1P10620 155 aaKnown RBP13.86□□□□□ -0.19
SNX1-208ENST00000559844 IER3P46695 156 aa13.86□□□□□ -0.19
SNX1-208ENST00000559844 ACTL10Q5JWF8 245 aa13.86□□□□□ -0.19
SNX1-208ENST00000559844 ZNF586Q9NXT0 402 aa13.86□□□□□ -0.19
SNX1-208ENST00000559844 GAR1Q9NY12 217 aaKnown RBP13.86□□□□□ -0.19
SNX1-208ENST00000559844 KLF12Q9Y4X4 402 aa13.86□□□□□ -0.19
SNX1-208ENST00000559844 SLC17A3O00476 420 aa13.85□□□□□ -0.19
SNX1-208ENST00000559844 HOXA3O43365 443 aaPredicted RBP13.85□□□□□ -0.19
SNX1-208ENST00000559844 SNRPCP09234 159 aaKnown RBP13.85□□□□□ -0.19
SNX1-208ENST00000559844 GNG5P63218 68 aa13.85□□□□□ -0.19
SNX1-208ENST00000559844 RPL19P84098 196 aaKnown RBP13.85□□□□□ -0.19
SNX1-208ENST00000559844 IBA57Q5T440 356 aaKnown RBP13.85□□□□□ -0.19
SNX1-208ENST00000559844 PIFOQ8TCI5 191 aa13.85□□□□□ -0.19
SNX1-208ENST00000559844 LINC00479Q96M42 142 aa13.85□□□□□ -0.19
SNX1-208ENST00000559844 NIPBLQ6KC79 2804 aaeCLIP13.85□□□□□ -0.19
SNX1-208ENST00000559844 TRBV9A0A0B4J1U6 114 aa13.85□□□□□ -0.19
SNX1-208ENST00000559844 CDX1P47902 265 aaPredicted RBP13.85□□□□□ -0.19
SNX1-208ENST00000559844 LYPD1Q8N2G4 141 aa13.85□□□□□ -0.19
SNX1-208ENST00000559844 FMC1Q96HJ9 113 aa13.85□□□□□ -0.19
SNX1-208ENST00000559844 OR2T8A6NH00 312 aa13.84□□□□□ -0.19
SNX1-208ENST00000559844 ZNF98A6NK75 572 aa13.84□□□□□ -0.19
SNX1-208ENST00000559844 TCRAP04437 139 aa13.84□□□□□ -0.19
SNX1-208ENST00000559844 CRIP2P52943 208 aaPredicted RBP13.84□□□□□ -0.19
SNX1-208ENST00000559844 RHOGP84095 191 aa13.84□□□□□ -0.19
SNX1-208ENST00000559844 USF2Q15853 346 aaPredicted RBP13.84□□□□□ -0.19
SNX1-208ENST00000559844 FAM231DQ6ZW35 169 aa13.84□□□□□ -0.19
SNX1-208ENST00000559844 ZNF502Q8TBZ5 544 aa13.84□□□□□ -0.19
SNX1-208ENST00000559844 ZNF418Q8TF45 676 aaPredicted RBP13.84□□□□□ -0.19
SNX1-208ENST00000559844 DUX5Q96PT3 197 aa13.84□□□□□ -0.19
SNX1-208ENST00000559844 CUBNO60494 3623 aa13.84□□□□□ -0.19
SNX1-208ENST00000559844 TRBV19A0A075B6N1 114 aa13.83□□□□□ -0.19
SNX1-208ENST00000559844 TRAV34A0A0B4J273 112 aa13.83□□□□□ -0.19
SNX1-208ENST00000559844 IGHV3-23P01764 117 aa13.83□□□□□ -0.19
SNX1-208ENST00000559844 CTSGP08311 255 aa13.83□□□□□ -0.19
SNX1-208ENST00000559844 LY6EQ16553 131 aa13.83□□□□□ -0.19
SNX1-208ENST00000559844 C15orf32Q32M92 178 aa13.83□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 75 ms