RNA–Protein interactions for RNA: ENST00000559257.5

USP3-211, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5

Gene USP3, Length 2,217 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-211ENST00000559257 H3BVH4 76 aa6.74□□□□□ -1.33
USP3-211ENST00000559257 K7ESM1 405 aa6.74□□□□□ -1.33
USP3-211ENST00000559257 WISP2O76076 250 aa6.74□□□□□ -1.33
USP3-211ENST00000559257 IGLV3-1P01715 115 aa6.74□□□□□ -1.33
USP3-211ENST00000559257 EFNA4P52798 201 aa6.74□□□□□ -1.33
USP3-211ENST00000559257 ZFP2Q6ZN57 461 aa6.74□□□□□ -1.33
USP3-211ENST00000559257 AAED1Q7RTV5 226 aa6.74□□□□□ -1.33
USP3-211ENST00000559257 C11orf53Q8IXP5 236 aa6.74□□□□□ -1.33
USP3-211ENST00000559257 PRSS3P2Q8NHM4 247 aa6.74□□□□□ -1.33
USP3-211ENST00000559257 WFDC5Q8TCV5 224 aa6.74□□□□□ -1.33
USP3-211ENST00000559257 MRPL20Q9BYC9 149 aaKnown RBP6.74□□□□□ -1.33
USP3-211ENST00000559257 AGPAT4-IT1Q9H0P7 198 aa6.74□□□□□ -1.33
USP3-211ENST00000559257 DEPPQ9NTK1 212 aa6.74□□□□□ -1.33
USP3-211ENST00000559257 IZUMO4Q1ZYL8 232 aa6.74□□□□□ -1.33
USP3-211ENST00000559257 KRTAP27-1Q3LI81 207 aa6.74□□□□□ -1.33
USP3-211ENST00000559257 Q6ZPA2 131 aa6.74□□□□□ -1.33
USP3-211ENST00000559257 FAM19A1Q7Z5A9 133 aa6.74□□□□□ -1.33
USP3-211ENST00000559257 MBD3L2Q8NHZ7 208 aaPredicted RBP6.74□□□□□ -1.33
USP3-211ENST00000559257 SCAMP4Q969E2 229 aa6.74□□□□□ -1.33
USP3-211ENST00000559257 HCSTQ9UBK5 93 aa6.74□□□□□ -1.33
USP3-211ENST00000559257 TRAV17A0A0B4J275 112 aa6.73□□□□□ -1.33
USP3-211ENST00000559257 LINC01549A6NIU2 74 aa6.73□□□□□ -1.33
USP3-211ENST00000559257 IL17RELQ6ZVW7 336 aa6.73□□□□□ -1.33
USP3-211ENST00000559257 SHANK2-AS3Q9BTD1 123 aa6.73□□□□□ -1.33
USP3-211ENST00000559257 ZNF256Q9Y2P7 627 aaPredicted RBP6.73□□□□□ -1.33
USP3-211ENST00000559257 TIMM8BQ9Y5J9 83 aaPredicted RBP6.73□□□□□ -1.33
USP3-211ENST00000559257 MYO9BQ13459 2157 aa6.73□□□□□ -1.33
USP3-211ENST00000559257 EPM2AB3EWF7 344 aa6.73□□□□□ -1.33
USP3-211ENST00000559257 TMEM178BH3BS89 294 aa6.73□□□□□ -1.33
USP3-211ENST00000559257 K7EMI3 77 aa6.73□□□□□ -1.33
USP3-211ENST00000559257 FOXS1O43638 330 aa6.73□□□□□ -1.33
USP3-211ENST00000559257 CD70P32970 193 aa6.73□□□□□ -1.33
USP3-211ENST00000559257 CXCL5P42830 114 aa6.73□□□□□ -1.33
USP3-211ENST00000559257 FAM27E3Q08E93 113 aa6.73□□□□□ -1.33
USP3-211ENST00000559257 TMEM170BQ5T4T1 132 aa6.73□□□□□ -1.33
USP3-211ENST00000559257 C7orf69Q9H7B7 122 aa6.73□□□□□ -1.33
USP3-211ENST00000559257 LINC00527Q9UJ94 153 aa6.73□□□□□ -1.33
USP3-211ENST00000559257 WI2-2373I1.2A0A1W2PRP0 233 aa6.72□□□□□ -1.33
USP3-211ENST00000559257 NDUFC2-KCTD14E9PQ53 114 aa6.72□□□□□ -1.33
USP3-211ENST00000559257 ATOX1O00244 68 aa6.72□□□□□ -1.33
USP3-211ENST00000559257 IGKV1D-16P01601 117 aa6.72□□□□□ -1.33
USP3-211ENST00000559257 COX6A1P12074 109 aa6.72□□□□□ -1.33
USP3-211ENST00000559257 CA6P23280 308 aa6.72□□□□□ -1.33
USP3-211ENST00000559257 ZNF816Q0VGE8 651 aaPredicted RBP6.72□□□□□ -1.33
USP3-211ENST00000559257 ZNF56Q15929 161 aa6.72□□□□□ -1.33
USP3-211ENST00000559257 TMEM155Q4W5P6 130 aa6.72□□□□□ -1.33
USP3-211ENST00000559257 DEFB121Q5J5C9 76 aa6.72□□□□□ -1.33
USP3-211ENST00000559257 DRAM1Q8N682 238 aa6.72□□□□□ -1.33
USP3-211ENST00000559257 NTN5Q8WTR8 489 aaPredicted RBP6.72□□□□□ -1.33
USP3-211ENST00000559257 TMEM190Q8WZ59 177 aa6.72□□□□□ -1.33
USP3-211ENST00000559257 FAM173AQ9BQD7 235 aa6.72□□□□□ -1.33
USP3-211ENST00000559257 RPP21Q9H633 154 aaKnown RBP6.72□□□□□ -1.33
USP3-211ENST00000559257 CALYQ9NYX4 217 aa6.72□□□□□ -1.33
USP3-211ENST00000559257 DKK2Q9UBU2 259 aa6.72□□□□□ -1.33
USP3-211ENST00000559257 TMEM150CB9EJG8 249 aa6.72□□□□□ -1.33
USP3-211ENST00000559257 ACYP1P07311 99 aa6.72□□□□□ -1.33
USP3-211ENST00000559257 COL8A2P25067 703 aa6.72□□□□□ -1.33
USP3-211ENST00000559257 AAMDCQ9H7C9 122 aa6.72□□□□□ -1.33
USP3-211ENST00000559257 IGKV1-8A0A0C4DH67 115 aa6.71□□□□□ -1.34
USP3-211ENST00000559257 FAM90A10PA6NDY2 464 aa6.71□□□□□ -1.34
USP3-211ENST00000559257 FAM90A20PA6NIJ5 464 aa6.71□□□□□ -1.34
USP3-211ENST00000559257 FAM90A7PA6NKC0 464 aa6.71□□□□□ -1.34
USP3-211ENST00000559257 FAM90A22PA8MWA6 464 aa6.71□□□□□ -1.34
USP3-211ENST00000559257 FAM90A12PA8MX19 464 aa6.71□□□□□ -1.34
USP3-211ENST00000559257 H3BMM0 161 aa6.71□□□□□ -1.34
USP3-211ENST00000559257 P0C879 139 aa6.71□□□□□ -1.34
USP3-211ENST00000559257 PAX8Q06710 450 aa6.71□□□□□ -1.34
USP3-211ENST00000559257 OR1C1Q15619 314 aa6.71□□□□□ -1.34
USP3-211ENST00000559257 TWIST1Q15672 202 aa6.71□□□□□ -1.34
USP3-211ENST00000559257 UBE2WQ96B02 151 aa6.71□□□□□ -1.34
USP3-211ENST00000559257 MGST2Q99735 147 aa6.71□□□□□ -1.34
USP3-211ENST00000559257 PRSS22Q9GZN4 317 aa6.71□□□□□ -1.34
USP3-211ENST00000559257 ZNF492Q9P255 531 aa6.71□□□□□ -1.34
USP3-211ENST00000559257 hADV29S1A0JD25 119 aa6.7□□□□□ -1.34
USP3-211ENST00000559257 FCER1GP30273 86 aa6.7□□□□□ -1.34
USP3-211ENST00000559257 SSR4P51571 173 aa6.7□□□□□ -1.34
USP3-211ENST00000559257 Q6ZVL8 140 aa6.7□□□□□ -1.34
USP3-211ENST00000559257 FAM90A1Q86YD7 464 aa6.7□□□□□ -1.34
USP3-211ENST00000559257 DSCR8Q96T75 97 aa6.7□□□□□ -1.34
USP3-211ENST00000559257 TTTY13Q9BZ97 58 aa6.7□□□□□ -1.34
USP3-211ENST00000559257 NDUFC2O95298 119 aa6.7□□□□□ -1.34
USP3-211ENST00000559257 CD24P25063 80 aa6.7□□□□□ -1.34
USP3-211ENST00000559257 NXPH1P58417 271 aa6.7□□□□□ -1.34
USP3-211ENST00000559257 HIST1H4AP62805 103 aaKnown RBP6.7□□□□□ -1.34
USP3-211ENST00000559257 MIC13Q5XKP0 118 aa6.7□□□□□ -1.34
USP3-211ENST00000559257 CEMP1Q6PRD7 247 aaPredicted RBP6.7□□□□□ -1.34
USP3-211ENST00000559257 NABP1Q96AH0 204 aa6.7□□□□□ -1.34
USP3-211ENST00000559257 ZNF442Q9H7R0 627 aa6.7□□□□□ -1.34
USP3-211ENST00000559257 TPSG1Q9NRR2 321 aa6.7□□□□□ -1.34
USP3-211ENST00000559257 KLF13Q9Y2Y9 288 aaPredicted RBP6.7□□□□□ -1.34
USP3-211ENST00000559257 TCF20Q9UGU0 1960 aaKnown RBP6.7□□□□□ -1.34
USP3-211ENST00000559257 UTRNP46939 3433 aa6.69□□□□□ -1.34
USP3-211ENST00000559257 PRNPP04156 253 aa6.69□□□□□ -1.34
USP3-211ENST00000559257 TMEM52BQ4KMG9 183 aa6.69□□□□□ -1.34
USP3-211ENST00000559257 MAPKAPK5-AS1Q8N8E1 139 aa6.69□□□□□ -1.34
USP3-211ENST00000559257 NXT2Q9NPJ8 142 aaKnown RBP6.69□□□□□ -1.34
USP3-211ENST00000559257 LSM4Q9Y4Z0 139 aaKnown RBP6.69□□□□□ -1.34
USP3-211ENST00000559257 ADAMTS9Q9P2N4 1935 aa6.69□□□□□ -1.34
USP3-211ENST00000559257 SRRM4A7MD48 611 aaKnown RBP6.69□□□□□ -1.34
USP3-211ENST00000559257 NPIPB11E5RHQ5 1161 aa6.69□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms