RNA–Protein interactions for RNA: ENST00000558919.1

VPS13C-207, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 5

Gene VPS13C, Length 566 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-207ENST00000558919 TRAV5A0A0B4J249 113 aa0.83□□□□□ -2.28
VPS13C-207ENST00000558919 TRBV6-5A0A0K0K1A5 114 aa0.83□□□□□ -2.28
VPS13C-207ENST00000558919 TRDV1A0A1B0GX56 115 aa0.83□□□□□ -2.28
VPS13C-207ENST00000558919 OR1I1O60431 355 aa0.83□□□□□ -2.28
VPS13C-207ENST00000558919 HIST1H2BKO60814 126 aa0.83□□□□□ -2.28
VPS13C-207ENST00000558919 HIST1H2BJP06899 126 aa0.83□□□□□ -2.28
VPS13C-207ENST00000558919 NBEAP1P0C6P0 100 aa0.83□□□□□ -2.28
VPS13C-207ENST00000558919 S100A11P31949 105 aa0.83□□□□□ -2.28
VPS13C-207ENST00000558919 BRS3P32247 399 aa0.83□□□□□ -2.28
VPS13C-207ENST00000558919 HBBP68871 147 aa0.83□□□□□ -2.28
VPS13C-207ENST00000558919 EIF3IQ13347 325 aaKnown RBP0.83□□□□□ -2.28
VPS13C-207ENST00000558919 SURF2Q15527 256 aaPredicted RBP0.83□□□□□ -2.28
VPS13C-207ENST00000558919 MSMO1Q15800 293 aa0.83□□□□□ -2.28
VPS13C-207ENST00000558919 PRR15Q8IV56 129 aa0.83□□□□□ -2.28
VPS13C-207ENST00000558919 C12orf29Q8N999 325 aa0.83□□□□□ -2.28
VPS13C-207ENST00000558919 TMEM35BQ8NCS4 154 aa0.83□□□□□ -2.28
VPS13C-207ENST00000558919 OR5D16Q8NGK9 328 aa0.83□□□□□ -2.28
VPS13C-207ENST00000558919 OR9Q1Q8NGQ5 310 aa0.83□□□□□ -2.28
VPS13C-207ENST00000558919 TMEM254Q8TBM7 123 aa0.83□□□□□ -2.28
VPS13C-207ENST00000558919 ZNF418Q8TF45 676 aaPredicted RBP0.83□□□□□ -2.28
VPS13C-207ENST00000558919 THEM6Q8WUY1 208 aa0.83□□□□□ -2.28
VPS13C-207ENST00000558919 SFT2D1Q8WV19 159 aa0.83□□□□□ -2.28
VPS13C-207ENST00000558919 AIF1LQ9BQI0 150 aa0.83□□□□□ -2.28
VPS13C-207ENST00000558919 TCEAL2Q9H3H9 227 aaPredicted RBP0.83□□□□□ -2.28
VPS13C-207ENST00000558919 CACYBPQ9HB71 228 aaKnown RBP0.83□□□□□ -2.28
VPS13C-207ENST00000558919 SPANXA1Q9NS26 97 aa0.83□□□□□ -2.28
VPS13C-207ENST00000558919 NAT8BQ9UHF3 227 aa0.83□□□□□ -2.28
VPS13C-207ENST00000558919 ASB4Q9Y574 426 aa0.83□□□□□ -2.28
VPS13C-207ENST00000558919 GLI3P10071 1580 aa0.83□□□□□ -2.28
VPS13C-207ENST00000558919 ZNF106Q9H2Y7 1883 aaKnown RBP0.82□□□□□ -2.28
VPS13C-207ENST00000558919 ANAPC1Q9H1A4 1944 aa0.82□□□□□ -2.28
VPS13C-207ENST00000558919 CAMSAP2Q08AD1 1489 aa0.82□□□□□ -2.28
VPS13C-207ENST00000558919 RP1P56715 2156 aa0.82□□□□□ -2.28
VPS13C-207ENST00000558919 TRAV12-1A0A0B4J245 112 aa0.82□□□□□ -2.28
VPS13C-207ENST00000558919 PRORSD1PA6NEY8 169 aa0.82□□□□□ -2.28
VPS13C-207ENST00000558919 ARL5CA6NH57 179 aa0.82□□□□□ -2.28
VPS13C-207ENST00000558919 C2orf70A6NJV1 201 aa0.82□□□□□ -2.28
VPS13C-207ENST00000558919 C17orf112F2Z3M2 114 aa0.82□□□□□ -2.28
VPS13C-207ENST00000558919 GABARAPH6UMI1 98 aa0.82□□□□□ -2.28
VPS13C-207ENST00000558919 K7ERJ3 54 aa0.82□□□□□ -2.28
VPS13C-207ENST00000558919 RER1O15258 196 aa0.82□□□□□ -2.28
VPS13C-207ENST00000558919 LYZL6O75951 148 aa0.82□□□□□ -2.28
VPS13C-207ENST00000558919 DHFRP00374 187 aa0.82□□□□□ -2.28
VPS13C-207ENST00000558919 OR10J4P0C629 311 aa0.82□□□□□ -2.28
VPS13C-207ENST00000558919 FABP2P12104 132 aa0.82□□□□□ -2.28
VPS13C-207ENST00000558919 SDC2P34741 201 aa0.82□□□□□ -2.28
VPS13C-207ENST00000558919 RPL35P42766 123 aaKnown RBP0.82□□□□□ -2.28
VPS13C-207ENST00000558919 NDUFA6P56556 154 aa0.82□□□□□ -2.28
VPS13C-207ENST00000558919 RAB4BP61018 213 aa0.82□□□□□ -2.28
VPS13C-207ENST00000558919 KLRD1Q13241 179 aa0.82□□□□□ -2.28
VPS13C-207ENST00000558919 DEFB113Q30KQ7 82 aa0.82□□□□□ -2.28
VPS13C-207ENST00000558919 C10orf55Q5SWW7 151 aa0.82□□□□□ -2.28
VPS13C-207ENST00000558919 Q8IYB0 196 aa0.82□□□□□ -2.28
VPS13C-207ENST00000558919 CHCHD1Q96BP2 118 aaKnown RBP0.82□□□□□ -2.28
VPS13C-207ENST00000558919 CARD19Q96LW7 228 aa0.82□□□□□ -2.28
VPS13C-207ENST00000558919 CCDC115Q96NT0 180 aa0.82□□□□□ -2.28
VPS13C-207ENST00000558919 RETNLBQ9BQ08 111 aa0.82□□□□□ -2.28
VPS13C-207ENST00000558919 OR2H1Q9GZK4 316 aa0.82□□□□□ -2.28
VPS13C-207ENST00000558919 LRTM1Q9HBL6 345 aa0.82□□□□□ -2.28
VPS13C-207ENST00000558919 OTORQ9NRC9 128 aa0.82□□□□□ -2.28
VPS13C-207ENST00000558919 RASL12Q9NYN1 266 aa0.82□□□□□ -2.28
VPS13C-207ENST00000558919 PLXND1Q9Y4D7 1925 aa0.81□□□□□ -2.28
VPS13C-207ENST00000558919 MUC16Q8WXI7 14507 aa0.81□□□□□ -2.28
VPS13C-207ENST00000558919 OR2T8A6NH00 312 aa0.81□□□□□ -2.28
VPS13C-207ENST00000558919 H7BYZ3 331 aa0.81□□□□□ -2.28
VPS13C-207ENST00000558919 M0R233 179 aa0.81□□□□□ -2.28
VPS13C-207ENST00000558919 KPNA4O00629 521 aaPredicted RBP0.81□□□□□ -2.28
VPS13C-207ENST00000558919 MRPS14O60783 128 aaKnown RBP0.81□□□□□ -2.28
VPS13C-207ENST00000558919 MT-ND6P03923 174 aa0.81□□□□□ -2.28
VPS13C-207ENST00000558919 RPL7P18124 248 aaKnown RBP0.81□□□□□ -2.28
VPS13C-207ENST00000558919 RAB5CP51148 216 aa0.81□□□□□ -2.28
VPS13C-207ENST00000558919 POLR2HP52434 150 aaKnown RBP0.81□□□□□ -2.28
VPS13C-207ENST00000558919 PDE6HQ13956 83 aa0.81□□□□□ -2.28
VPS13C-207ENST00000558919 CDK5R1Q15078 307 aa0.81□□□□□ -2.28
VPS13C-207ENST00000558919 ALX1Q15699 326 aa0.81□□□□□ -2.28
VPS13C-207ENST00000558919 C2orf82Q6UX34 121 aa0.81□□□□□ -2.28
VPS13C-207ENST00000558919 HRCT1Q6UXD1 115 aa0.81□□□□□ -2.28
VPS13C-207ENST00000558919 UNQ6190/PRO20217Q6UXQ8 127 aa0.81□□□□□ -2.28
VPS13C-207ENST00000558919 PATE2Q6UY27 113 aa0.81□□□□□ -2.28
VPS13C-207ENST00000558919 C4orf22Q6V702 233 aa0.81□□□□□ -2.28
VPS13C-207ENST00000558919 PHF5AQ7RTV0 110 aaKnown RBP0.81□□□□□ -2.28
VPS13C-207ENST00000558919 CLECL1Q8IZS7 167 aa0.81□□□□□ -2.28
VPS13C-207ENST00000558919 ST6GALNAC3Q8NDV1 305 aa0.81□□□□□ -2.28
VPS13C-207ENST00000558919 OR5D14Q8NGL3 314 aa0.81□□□□□ -2.28
VPS13C-207ENST00000558919 C4orf3Q8WVX3 66 aa0.81□□□□□ -2.28
VPS13C-207ENST00000558919 POP5Q969H6 163 aaKnown RBP0.81□□□□□ -2.28
VPS13C-207ENST00000558919 LXNQ9BS40 222 aa0.81□□□□□ -2.28
VPS13C-207ENST00000558919 REG4Q9BYZ8 158 aa0.81□□□□□ -2.28
VPS13C-207ENST00000558919 MED9Q9NWA0 146 aa0.81□□□□□ -2.28
VPS13C-207ENST00000558919 SPANXCQ9NY87 97 aa0.81□□□□□ -2.28
VPS13C-207ENST00000558919 TRAPPC2LQ9UL33 140 aa0.81□□□□□ -2.28
VPS13C-207ENST00000558919 RNF11Q9Y3C5 154 aa0.81□□□□□ -2.28
VPS13C-207ENST00000558919 MED31Q9Y3C7 131 aa0.81□□□□□ -2.28
VPS13C-207ENST00000558919 RIMBP3CA6NJZ7 1639 aa0.81□□□□□ -2.28
VPS13C-207ENST00000558919 RIMBP3BA6NNM3 1639 aa0.81□□□□□ -2.28
VPS13C-207ENST00000558919 RIMBP3Q9UFD9 1639 aa0.81□□□□□ -2.28
VPS13C-207ENST00000558919 TECPR2O15040 1411 aa0.81□□□□□ -2.28
VPS13C-207ENST00000558919 CEP164Q9UPV0 1460 aa0.8□□□□□ -2.28
VPS13C-207ENST00000558919 ECM29Q5VYK3 1845 aa0.8□□□□□ -2.28
VPS13C-207ENST00000558919 IGHV1-58A0A0C4DH39 117 aa0.8□□□□□ -2.28
Retrieved 100 of 20,778 RNA–protein pairs in 54.1 ms