RNA–Protein interactions for RNA: ENST00000556798.1

SHMT2-225, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 525 nt, Biotype retained intron, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-225ENST00000556798 INO80EQ8NBZ0 244 aaPredicted RBP12.99□□□□□ -0.33
SHMT2-225ENST00000556798 RSG1Q9BU20 258 aa12.99□□□□□ -0.33
SHMT2-225ENST00000556798 TNFSF18Q9UNG2 199 aa12.99□□□□□ -0.33
SHMT2-225ENST00000556798 COL7A1Q02388 2944 aa12.99□□□□□ -0.33
SHMT2-225ENST00000556798 RBMY1BA6NDE4 496 aaKnown RBP12.98□□□□□ -0.33
SHMT2-225ENST00000556798 RBMY1EA6NEQ0 496 aaKnown RBP12.98□□□□□ -0.33
SHMT2-225ENST00000556798 RBMY1DP0C7P1 496 aaKnown RBP12.98□□□□□ -0.33
SHMT2-225ENST00000556798 GALR1P47211 349 aa12.98□□□□□ -0.33
SHMT2-225ENST00000556798 DEFB131AP59861 70 aa12.98□□□□□ -0.33
SHMT2-225ENST00000556798 SBSPONQ8IVN8 264 aa12.98□□□□□ -0.33
SHMT2-225ENST00000556798 ZNF709Q8N972 641 aa12.98□□□□□ -0.33
SHMT2-225ENST00000556798 OR1L4Q8NGR5 311 aa12.98□□□□□ -0.33
SHMT2-225ENST00000556798 SCGB1C1Q8TD33 95 aa12.98□□□□□ -0.33
SHMT2-225ENST00000556798 DNAJC4Q9NNZ3 241 aa12.98□□□□□ -0.33
SHMT2-225ENST00000556798 ELOA3CA0A087WX78 387 aaPredicted RBP12.97□□□□□ -0.33
SHMT2-225ENST00000556798 ARPC5O15511 151 aa12.97□□□□□ -0.33
SHMT2-225ENST00000556798 C17orf77Q96MU5 243 aa12.97□□□□□ -0.33
SHMT2-225ENST00000556798 PFDN5Q99471 154 aa12.97□□□□□ -0.33
SHMT2-225ENST00000556798 FAM110AQ9BQ89 295 aa12.97□□□□□ -0.33
SHMT2-225ENST00000556798 RFNGQ9Y644 331 aa12.97□□□□□ -0.33
SHMT2-225ENST00000556798 C17orf112F2Z3M2 114 aa12.96□□□□□ -0.33
SHMT2-225ENST00000556798 RPL7P18124 248 aaKnown RBP12.96□□□□□ -0.33
SHMT2-225ENST00000556798 PSMG4Q5JS54 123 aa12.96□□□□□ -0.33
SHMT2-225ENST00000556798 S100A7AQ86SG5 101 aa12.96□□□□□ -0.33
SHMT2-225ENST00000556798 GPR82Q96P67 336 aa12.96□□□□□ -0.33
SHMT2-225ENST00000556798 KCNIP2Q9NS61 270 aa12.96□□□□□ -0.33
SHMT2-225ENST00000556798 TRAV5A0A0B4J249 113 aa12.95□□□□□ -0.34
SHMT2-225ENST00000556798 SOCS3O14543 225 aa12.95□□□□□ -0.34
SHMT2-225ENST00000556798 ATF4P18848 351 aaPredicted RBP12.95□□□□□ -0.34
SHMT2-225ENST00000556798 CMC4P56277 68 aaPredicted RBP12.95□□□□□ -0.34
SHMT2-225ENST00000556798 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa12.95□□□□□ -0.34
SHMT2-225ENST00000556798 LINC00322Q6ZN03 302 aaPredicted RBP12.95□□□□□ -0.34
SHMT2-225ENST00000556798 PARD6GQ9BYG4 376 aaPredicted RBP12.95□□□□□ -0.34
SHMT2-225ENST00000556798 MRPS12O15235 138 aaKnown RBP12.94□□□□□ -0.34
SHMT2-225ENST00000556798 SNRPCP09234 159 aaKnown RBP12.94□□□□□ -0.34
SHMT2-225ENST00000556798 RPL35AP18077 110 aaKnown RBP12.94□□□□□ -0.34
SHMT2-225ENST00000556798 ZNF266Q14584 549 aa12.94□□□□□ -0.34
SHMT2-225ENST00000556798 HAGHQ16775 308 aa12.94□□□□□ -0.34
SHMT2-225ENST00000556798 FFAR4Q5NUL3 377 aa12.94□□□□□ -0.34
SHMT2-225ENST00000556798 HSD17B11Q8NBQ5 300 aa12.94□□□□□ -0.34
SHMT2-225ENST00000556798 OR11H4Q8NGC9 324 aa12.94□□□□□ -0.34
SHMT2-225ENST00000556798 ST6GAL2Q96JF0 529 aa12.94□□□□□ -0.34
SHMT2-225ENST00000556798 HUWE1Q7Z6Z7 4374 aaKnown RBP12.94□□□□□ -0.34
SHMT2-225ENST00000556798 LOC102724200A0A096LPH7 203 aaPredicted RBP12.93□□□□□ -0.34
SHMT2-225ENST00000556798 KNCNA6PVL3 124 aa12.93□□□□□ -0.34
SHMT2-225ENST00000556798 SNRPD3P62318 126 aaKnown RBP12.93□□□□□ -0.34
SHMT2-225ENST00000556798 FAM78BQ5VT40 261 aa12.93□□□□□ -0.34
SHMT2-225ENST00000556798 SPATA31B1PQ5VZV4 182 aa12.93□□□□□ -0.34
SHMT2-225ENST00000556798 GATAD1Q8WUU5 269 aa12.93□□□□□ -0.34
SHMT2-225ENST00000556798 C16orf92Q96LL3 132 aa12.93□□□□□ -0.34
SHMT2-225ENST00000556798 LINC00052Q96N35 136 aa12.93□□□□□ -0.34
SHMT2-225ENST00000556798 MFFQ9GZY8 342 aa12.93□□□□□ -0.34
SHMT2-225ENST00000556798 PSMB3P49720 205 aa12.92□□□□□ -0.34
SHMT2-225ENST00000556798 MEOX2P50222 304 aa12.92□□□□□ -0.34
SHMT2-225ENST00000556798 DEFB1P60022 68 aa12.92□□□□□ -0.34
SHMT2-225ENST00000556798 IGFL4Q6B9Z1 124 aa12.92□□□□□ -0.34
SHMT2-225ENST00000556798 RPL7L1Q6DKI1 246 aaKnown RBP12.92□□□□□ -0.34
SHMT2-225ENST00000556798 BPIFA4PQ86YQ2 179 aa12.92□□□□□ -0.34
SHMT2-225ENST00000556798 SEPSECSQ9HD40 501 aaKnown RBP12.92□□□□□ -0.34
SHMT2-225ENST00000556798 RNF24Q9Y225 148 aa12.92□□□□□ -0.34
SHMT2-225ENST00000556798 TENM3Q9P273 2699 aa12.91□□□□□ -0.34
SHMT2-225ENST00000556798 A0A087X0K7 114 aa12.91□□□□□ -0.34
SHMT2-225ENST00000556798 A0A1B0GVG6 124 aa12.91□□□□□ -0.34
SHMT2-225ENST00000556798 H3BTX0 84 aa12.91□□□□□ -0.34
SHMT2-225ENST00000556798 ID1P41134 155 aa12.91□□□□□ -0.34
SHMT2-225ENST00000556798 MIR17HGQ75NE6 70 aa12.91□□□□□ -0.34
SHMT2-225ENST00000556798 C20orf173Q96LM9 149 aa12.91□□□□□ -0.34
SHMT2-225ENST00000556798 TRAV8-2A0A0B4J237 113 aa12.9□□□□□ -0.34
SHMT2-225ENST00000556798 ISLRO14498 428 aa12.9□□□□□ -0.34
SHMT2-225ENST00000556798 ATP6V0CP27449 155 aa12.9□□□□□ -0.34
SHMT2-225ENST00000556798 ACTL10Q5JWF8 245 aa12.9□□□□□ -0.34
SHMT2-225ENST00000556798 RNF182Q8N6D2 247 aa12.9□□□□□ -0.34
SHMT2-225ENST00000556798 SLC25A2Q9BXI2 301 aa12.9□□□□□ -0.34
SHMT2-225ENST00000556798 SH3BGRL3Q9H299 93 aa12.9□□□□□ -0.34
SHMT2-225ENST00000556798 RETNQ9HD89 108 aa12.9□□□□□ -0.34
SHMT2-225ENST00000556798 TIMM9Q9Y5J7 89 aa12.9□□□□□ -0.34
SHMT2-225ENST00000556798 NBEAL2Q6ZNJ1 2754 aa12.89□□□□□ -0.35
SHMT2-225ENST00000556798 HMSDA8MTL9 139 aa12.89□□□□□ -0.35
SHMT2-225ENST00000556798 EIF3GO75821 320 aaKnown RBP eCLIP12.89□□□□□ -0.35
SHMT2-225ENST00000556798 IGLC2P0DOY2 106 aa12.89□□□□□ -0.35
SHMT2-225ENST00000556798 SAMD13Q5VXD3 122 aa12.89□□□□□ -0.35
SHMT2-225ENST00000556798 STHQ8IWL8 128 aa12.89□□□□□ -0.35
SHMT2-225ENST00000556798 TM2D3Q9BRN9 247 aa12.89□□□□□ -0.35
SHMT2-225ENST00000556798 BORCS7-ASMTA0A0B4J1R7 106 aa12.88□□□□□ -0.35
SHMT2-225ENST00000556798 H3BQ15 152 aa12.88□□□□□ -0.35
SHMT2-225ENST00000556798 SLC17A3O00476 420 aa12.88□□□□□ -0.35
SHMT2-225ENST00000556798 NHLRC4P0CG21 123 aaPredicted RBP12.88□□□□□ -0.35
SHMT2-225ENST00000556798 PYYP10082 97 aa12.88□□□□□ -0.35
SHMT2-225ENST00000556798 CXCL2P19875 107 aa12.88□□□□□ -0.35
SHMT2-225ENST00000556798 HLA-DMBP28068 263 aa12.88□□□□□ -0.35
SHMT2-225ENST00000556798 RAB2AP61019 212 aa12.88□□□□□ -0.35
SHMT2-225ENST00000556798 ZNF345Q14585 488 aa12.88□□□□□ -0.35
SHMT2-225ENST00000556798 GDF5OSQ5U4N7 250 aa12.88□□□□□ -0.35
SHMT2-225ENST00000556798 AKAP14Q86UN6 197 aa12.88□□□□□ -0.35
SHMT2-225ENST00000556798 TCTE3Q8IZS6 198 aa12.88□□□□□ -0.35
SHMT2-225ENST00000556798 KCNRGQ8N5I3 272 aa12.88□□□□□ -0.35
SHMT2-225ENST00000556798 LRRC20Q8TCA0 184 aa12.88□□□□□ -0.35
SHMT2-225ENST00000556798 MRPL32Q9BYC8 188 aaKnown RBP12.88□□□□□ -0.35
SHMT2-225ENST00000556798 CYTL1Q9NRR1 136 aa12.88□□□□□ -0.35
SHMT2-225ENST00000556798 FUT9Q9Y231 359 aa12.88□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 65.4 ms