RNA–Protein interactions for RNA: ENST00000556726.5

CCDC88C-211, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 5

Gene CCDC88C, Length 3,617 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-211ENST00000556726 ZNF833PQ6ZTB9 187 aa9.75□□□□□ -0.85
CCDC88C-211ENST00000556726 TEX45Q8NA69 505 aa9.75□□□□□ -0.85
CCDC88C-211ENST00000556726 TMEM116Q8NCL8 245 aa9.75□□□□□ -0.85
CCDC88C-211ENST00000556726 OR4A5Q8NH83 315 aa9.75□□□□□ -0.85
CCDC88C-211ENST00000556726 TRBV9A0A0B4J1U6 114 aa9.74□□□□□ -0.85
CCDC88C-211ENST00000556726 C22orf46C9J442 243 aa9.74□□□□□ -0.85
CCDC88C-211ENST00000556726 PRSS46E5RG02 174 aa9.74□□□□□ -0.85
CCDC88C-211ENST00000556726 NDUFS7O75251 213 aa9.74□□□□□ -0.85
CCDC88C-211ENST00000556726 TWIST1Q15672 202 aa9.74□□□□□ -0.85
CCDC88C-211ENST00000556726 UNQ5815/PRO19632Q6UWF5 114 aa9.74□□□□□ -0.85
CCDC88C-211ENST00000556726 C18orf32Q8TCD1 76 aa9.74□□□□□ -0.85
CCDC88C-211ENST00000556726 CGB3P0DN86 165 aa9.74□□□□□ -0.85
CCDC88C-211ENST00000556726 CGB7P0DN87 165 aa9.74□□□□□ -0.85
CCDC88C-211ENST00000556726 FCER1GP30273 86 aa9.74□□□□□ -0.85
CCDC88C-211ENST00000556726 CA7P43166 264 aa9.74□□□□□ -0.85
CCDC88C-211ENST00000556726 TMPRSS3P57727 454 aa9.74□□□□□ -0.85
CCDC88C-211ENST00000556726 COX19Q49B96 90 aa9.74□□□□□ -0.85
CCDC88C-211ENST00000556726 RUSC1-AS1Q66K80 236 aa9.74□□□□□ -0.85
CCDC88C-211ENST00000556726 DPM3Q9P2X0 92 aa9.74□□□□□ -0.85
CCDC88C-211ENST00000556726 LOC105371242A0A075B767 164 aa9.74□□□□□ -0.85
CCDC88C-211ENST00000556726 IGKV2-40A0A087WW87 121 aaPredicted RBP9.74□□□□□ -0.85
CCDC88C-211ENST00000556726 IGKV2D-40P01614 121 aaPredicted RBP9.74□□□□□ -0.85
CCDC88C-211ENST00000556726 GPR183P32249 361 aa9.74□□□□□ -0.85
CCDC88C-211ENST00000556726 SLC25A39Q9BZJ4 359 aaPredicted RBP9.74□□□□□ -0.85
CCDC88C-211ENST00000556726 RNF114Q9Y508 228 aa9.74□□□□□ -0.85
CCDC88C-211ENST00000556726 SCGB2A1O75556 95 aa9.73□□□□□ -0.85
CCDC88C-211ENST00000556726 APOHP02749 345 aaPredicted RBP9.73□□□□□ -0.85
CCDC88C-211ENST00000556726 TCRAP04437 139 aa9.73□□□□□ -0.85
CCDC88C-211ENST00000556726 LY6DQ14210 128 aa9.73□□□□□ -0.85
CCDC88C-211ENST00000556726 OR4C5Q8NGB2 326 aa9.73□□□□□ -0.85
CCDC88C-211ENST00000556726 MAP1LC3CQ9BXW4 147 aa9.73□□□□□ -0.85
CCDC88C-211ENST00000556726 COL12A1Q99715 3063 aa9.73□□□□□ -0.85
CCDC88C-211ENST00000556726 BTF3P20290 206 aaKnown RBP9.73□□□□□ -0.85
CCDC88C-211ENST00000556726 COA6Q5JTJ3 125 aaKnown RBP9.73□□□□□ -0.85
CCDC88C-211ENST00000556726 BUB1B-PAK6H3BSN5 160 aa9.73□□□□□ -0.85
CCDC88C-211ENST00000556726 HLA-DRB1P01911 266 aa9.73□□□□□ -0.85
CCDC88C-211ENST00000556726 ZNF124Q15973 351 aa9.73□□□□□ -0.85
CCDC88C-211ENST00000556726 TMEM155Q4W5P6 130 aa9.73□□□□□ -0.85
CCDC88C-211ENST00000556726 TM4SF20Q53R12 229 aa9.73□□□□□ -0.85
CCDC88C-211ENST00000556726 FXYD5Q96DB9 178 aa9.73□□□□□ -0.85
CCDC88C-211ENST00000556726 C2orf88Q9BSF0 95 aa9.73□□□□□ -0.85
CCDC88C-211ENST00000556726 TMEM70Q9BUB7 260 aa9.73□□□□□ -0.85
CCDC88C-211ENST00000556726 LAMTOR2Q9Y2Q5 125 aa9.73□□□□□ -0.85
CCDC88C-211ENST00000556726 TMEM189A5PLL7 270 aa9.72□□□□□ -0.85
CCDC88C-211ENST00000556726 NPIPB5A8MRT5 1133 aa9.72□□□□□ -0.85
CCDC88C-211ENST00000556726 RELQ04864 619 aaPredicted RBP9.72□□□□□ -0.85
CCDC88C-211ENST00000556726 SP5Q6BEB4 398 aaPredicted RBP9.72□□□□□ -0.85
CCDC88C-211ENST00000556726 FAM169BQ8N8A8 192 aa9.72□□□□□ -0.85
CCDC88C-211ENST00000556726 C11orf52Q96A22 123 aa9.72□□□□□ -0.85
CCDC88C-211ENST00000556726 RNF125Q96EQ8 232 aa9.72□□□□□ -0.85
CCDC88C-211ENST00000556726 FAM167A-AS1Q96KT0 104 aa9.72□□□□□ -0.85
CCDC88C-211ENST00000556726 TMEM191AQ9H0A3 160 aa9.72□□□□□ -0.85
CCDC88C-211ENST00000556726 TP53TG3Q9ULZ0 132 aa9.72□□□□□ -0.85
CCDC88C-211ENST00000556726 NCR2O95944 276 aa9.72□□□□□ -0.85
CCDC88C-211ENST00000556726 NPSP0C0P6 89 aa9.72□□□□□ -0.85
CCDC88C-211ENST00000556726 RIGQ13278 110 aa9.72□□□□□ -0.85
CCDC88C-211ENST00000556726 NUDT3O95989 172 aa9.71□□□□□ -0.85
CCDC88C-211ENST00000556726 NMUP48645 174 aa9.71□□□□□ -0.85
CCDC88C-211ENST00000556726 TDGF1P3P51864 188 aa9.71□□□□□ -0.85
CCDC88C-211ENST00000556726 LY6EQ16553 131 aa9.71□□□□□ -0.85
CCDC88C-211ENST00000556726 AARDQ4LEZ3 155 aa9.71□□□□□ -0.85
CCDC88C-211ENST00000556726 TPTE2P1Q5T6R2 138 aa9.71□□□□□ -0.85
CCDC88C-211ENST00000556726 NUP37Q8NFH4 326 aa9.71□□□□□ -0.85
CCDC88C-211ENST00000556726 SMKR1H3BMG3 65 aa9.71□□□□□ -0.85
CCDC88C-211ENST00000556726 M0QZK8 103 aa9.71□□□□□ -0.85
CCDC88C-211ENST00000556726 TEX36Q5VZQ5 186 aa9.71□□□□□ -0.85
CCDC88C-211ENST00000556726 LINC00173Q6ZV60 143 aa9.71□□□□□ -0.85
CCDC88C-211ENST00000556726 NAA38Q9BRA0 125 aaKnown RBP9.71□□□□□ -0.85
CCDC88C-211ENST00000556726 THYN1Q9P016 225 aa9.71□□□□□ -0.85
CCDC88C-211ENST00000556726 ARMS2P0C7Q2 107 aa9.71□□□□□ -0.86
CCDC88C-211ENST00000556726 LBHQ53QV2 105 aaPredicted RBP9.71□□□□□ -0.86
CCDC88C-211ENST00000556726 RBPMS2Q6ZRY4 209 aaKnown RBP9.71□□□□□ -0.86
CCDC88C-211ENST00000556726 C8orf46Q8TAG6 207 aa9.71□□□□□ -0.86
CCDC88C-211ENST00000556726 NDFIP1Q9BT67 221 aa9.71□□□□□ -0.86
CCDC88C-211ENST00000556726 F11RQ9Y624 299 aaKnown RBP9.71□□□□□ -0.86
CCDC88C-211ENST00000556726 LRBAP50851 2863 aa9.71□□□□□ -0.86
CCDC88C-211ENST00000556726 IGLC7A0M8Q6 106 aa9.7□□□□□ -0.86
CCDC88C-211ENST00000556726 PRSS1P07477 247 aa9.7□□□□□ -0.86
CCDC88C-211ENST00000556726 ARL3P36405 182 aa9.7□□□□□ -0.86
CCDC88C-211ENST00000556726 MFAP4P55083 255 aa9.7□□□□□ -0.86
CCDC88C-211ENST00000556726 TMEM208Q9BTX3 173 aa9.7□□□□□ -0.86
CCDC88C-211ENST00000556726 PSG8Q9UQ74 426 aa9.7□□□□□ -0.86
CCDC88C-211ENST00000556726 A0A1B0GUT8 65 aa9.7□□□□□ -0.86
CCDC88C-211ENST00000556726 FAM181BA6NEQ2 426 aa9.7□□□□□ -0.86
CCDC88C-211ENST00000556726 NBR2O15453 112 aa9.7□□□□□ -0.86
CCDC88C-211ENST00000556726 CKS2P33552 79 aa9.7□□□□□ -0.86
CCDC88C-211ENST00000556726 IGFL3Q6UXB1 125 aa9.7□□□□□ -0.86
CCDC88C-211ENST00000556726 BEND2Q8NDZ0 799 aa9.7□□□□□ -0.86
CCDC88C-211ENST00000556726 RAB37Q96AX2 223 aa9.7□□□□□ -0.86
CCDC88C-211ENST00000556726 AP5S1Q9NUS5 200 aa9.7□□□□□ -0.86
CCDC88C-211ENST00000556726 LRRK2Q5S007 2527 aa9.7□□□□□ -0.86
CCDC88C-211ENST00000556726 ITGB1BP1O14713 200 aa9.7□□□□□ -0.86
CCDC88C-211ENST00000556726 COMPP49747 757 aaPredicted RBP9.7□□□□□ -0.86
CCDC88C-211ENST00000556726 ATP5IP56385 69 aaPredicted RBP9.7□□□□□ -0.86
CCDC88C-211ENST00000556726 POU2AF1Q16633 256 aa9.7□□□□□ -0.86
CCDC88C-211ENST00000556726 TMEM219Q86XT9 240 aa9.7□□□□□ -0.86
CCDC88C-211ENST00000556726 KLK15Q9H2R5 256 aa9.7□□□□□ -0.86
CCDC88C-211ENST00000556726 ABCA2Q9BZC7 2435 aa9.69□□□□□ -0.86
CCDC88C-211ENST00000556726 TRAV9-1A0A075B6T8 112 aa9.69□□□□□ -0.86
CCDC88C-211ENST00000556726 FOSL1P15407 271 aa9.69□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 58.3 ms