RNA–Protein interactions for RNA: ENST00000555612.5

SYNE2-220, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 1 (best)

Gene SYNE2, Length 6,766 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-220ENST00000555612 OR5A1Q8NGJ0 315 aa6.66□□□□□ -1.34
SYNE2-220ENST00000555612 PHLDA1Q8WV24 401 aaPredicted RBP6.66□□□□□ -1.34
SYNE2-220ENST00000555612 ORMDL2Q53FV1 153 aa6.66□□□□□ -1.34
SYNE2-220ENST00000555612 FOXL2NBQ6ZUU3 175 aa6.66□□□□□ -1.34
SYNE2-220ENST00000555612 LINC00477Q96M19 166 aa6.66□□□□□ -1.34
SYNE2-220ENST00000555612 WFDC1Q9HC57 220 aa6.66□□□□□ -1.34
SYNE2-220ENST00000555612 NCR2O95944 276 aa6.65□□□□□ -1.34
SYNE2-220ENST00000555612 RNF182Q8N6D2 247 aa6.65□□□□□ -1.34
SYNE2-220ENST00000555612 TOMM40O96008 361 aa6.65□□□□□ -1.34
SYNE2-220ENST00000555612 SMIM13P0DJ93 91 aa6.65□□□□□ -1.34
SYNE2-220ENST00000555612 DEFB113Q30KQ7 82 aa6.65□□□□□ -1.34
SYNE2-220ENST00000555612 Q6ZR03 302 aa6.65□□□□□ -1.34
SYNE2-220ENST00000555612 C1orf159Q96HA4 380 aa6.65□□□□□ -1.34
SYNE2-220ENST00000555612 MGST2Q99735 147 aa6.65□□□□□ -1.34
SYNE2-220ENST00000555612 TICRRQ7Z2Z1 1910 aa6.65□□□□□ -1.34
SYNE2-220ENST00000555612 MST1LQ2TV78 715 aa6.65□□□□□ -1.34
SYNE2-220ENST00000555612 H0YIZ8 118 aa6.65□□□□□ -1.35
SYNE2-220ENST00000555612 PLP1P60201 277 aa6.65□□□□□ -1.35
SYNE2-220ENST00000555612 ZNF562Q6V9R5 426 aa6.65□□□□□ -1.35
SYNE2-220ENST00000555612 TMEM86BQ8N661 226 aa6.65□□□□□ -1.35
SYNE2-220ENST00000555612 OCC1Q8TAD7 63 aa6.65□□□□□ -1.35
SYNE2-220ENST00000555612 Q8TCH9 128 aa6.65□□□□□ -1.35
SYNE2-220ENST00000555612 HS3ST6Q96QI5 342 aa6.65□□□□□ -1.35
SYNE2-220ENST00000555612 CST9LQ9H4G1 147 aa6.65□□□□□ -1.35
SYNE2-220ENST00000555612 MLANAQ16655 118 aa6.65□□□□□ -1.35
SYNE2-220ENST00000555612 NRN1Q9NPD7 142 aa6.65□□□□□ -1.35
SYNE2-220ENST00000555612 DMRT1Q9Y5R6 373 aa6.65□□□□□ -1.35
SYNE2-220ENST00000555612 A0A087WWL8 130 aa6.64□□□□□ -1.35
SYNE2-220ENST00000555612 KNCNA6PVL3 124 aa6.64□□□□□ -1.35
SYNE2-220ENST00000555612 NDUFB8O95169 186 aa6.64□□□□□ -1.35
SYNE2-220ENST00000555612 TCRAP04437 139 aa6.64□□□□□ -1.35
SYNE2-220ENST00000555612 ERCC8Q13216 396 aa6.64□□□□□ -1.35
SYNE2-220ENST00000555612 CHTOPQ9Y3Y2 248 aaKnown RBP6.64□□□□□ -1.35
SYNE2-220ENST00000555612 ZFHX2Q9C0A1 2572 aaPredicted RBP6.64□□□□□ -1.35
SYNE2-220ENST00000555612 PPBPP02775 128 aa6.64□□□□□ -1.35
SYNE2-220ENST00000555612 LOXP28300 417 aaPredicted RBP6.64□□□□□ -1.35
SYNE2-220ENST00000555612 ZMAT4Q9H898 229 aa6.64□□□□□ -1.35
SYNE2-220ENST00000555612 FNDC1Q4ZHG4 1894 aaPredicted RBP6.64□□□□□ -1.35
SYNE2-220ENST00000555612 TRAV2A0A0B4J234 112 aa6.64□□□□□ -1.35
SYNE2-220ENST00000555612 HBDP02042 147 aa6.64□□□□□ -1.35
SYNE2-220ENST00000555612 C14orf144Q96I85 54 aa6.64□□□□□ -1.35
SYNE2-220ENST00000555612 OSTCQ9NRP0 149 aa6.64□□□□□ -1.35
SYNE2-220ENST00000555612 PI4KAP42356 2102 aa6.64□□□□□ -1.35
SYNE2-220ENST00000555612 A0A1W2PPI3 338 aa6.64□□□□□ -1.35
SYNE2-220ENST00000555612 SH2D1AO60880 128 aa6.64□□□□□ -1.35
SYNE2-220ENST00000555612 C14orf178Q8N769 122 aaPredicted RBP6.64□□□□□ -1.35
SYNE2-220ENST00000555612 NRGNQ92686 78 aa6.64□□□□□ -1.35
SYNE2-220ENST00000555612 CACNA1HO95180 2353 aa6.64□□□□□ -1.35
SYNE2-220ENST00000555612 APOC4P55056 127 aa6.64□□□□□ -1.35
SYNE2-220ENST00000555612 SUPT4H1P63272 117 aaKnown RBP6.64□□□□□ -1.35
SYNE2-220ENST00000555612 CD300EQ496F6 205 aaPredicted RBP6.64□□□□□ -1.35
SYNE2-220ENST00000555612 C1QL4Q86Z23 238 aa6.64□□□□□ -1.35
SYNE2-220ENST00000555612 JPT2Q9H910 190 aa6.64□□□□□ -1.35
SYNE2-220ENST00000555612 TRBV6-6A0A0A6YYG2 114 aa6.63□□□□□ -1.35
SYNE2-220ENST00000555612 PSG3Q16557 428 aa6.63□□□□□ -1.35
SYNE2-220ENST00000555612 SPINK13Q1W4C9 94 aa6.63□□□□□ -1.35
SYNE2-220ENST00000555612 LYZL1Q6UWQ5 148 aa6.63□□□□□ -1.35
SYNE2-220ENST00000555612 LSM4Q9Y4Z0 139 aaKnown RBP6.63□□□□□ -1.35
SYNE2-220ENST00000555612 CLDN16Q9Y5I7 305 aa6.63□□□□□ -1.35
SYNE2-220ENST00000555612 CACNA1DQ01668 2161 aa6.63□□□□□ -1.35
SYNE2-220ENST00000555612 STAG3L3P0CL85 134 aa6.63□□□□□ -1.35
SYNE2-220ENST00000555612 RNASE2P10153 161 aaKnown RBP6.63□□□□□ -1.35
SYNE2-220ENST00000555612 TCTEX1D4Q5JR98 221 aa6.63□□□□□ -1.35
SYNE2-220ENST00000555612 DOCK8Q8NF50 2099 aa6.63□□□□□ -1.35
SYNE2-220ENST00000555612 PKDREJQ9NTG1 2253 aa6.63□□□□□ -1.35
SYNE2-220ENST00000555612 ZNF503-AS2A6NEH8 195 aa6.63□□□□□ -1.35
SYNE2-220ENST00000555612 DKK1O94907 266 aa6.63□□□□□ -1.35
SYNE2-220ENST00000555612 CGB3P0DN86 165 aa6.63□□□□□ -1.35
SYNE2-220ENST00000555612 DEFB112Q30KQ8 113 aa6.63□□□□□ -1.35
SYNE2-220ENST00000555612 TSKUQ8WUA8 353 aa6.63□□□□□ -1.35
SYNE2-220ENST00000555612 VWA8A3KMH1 1905 aa6.63□□□□□ -1.35
SYNE2-220ENST00000555612 TRAV9-1A0A075B6T8 112 aa6.63□□□□□ -1.35
SYNE2-220ENST00000555612 TSPAN13O95857 204 aa6.63□□□□□ -1.35
SYNE2-220ENST00000555612 NPC2P61916 151 aa6.63□□□□□ -1.35
SYNE2-220ENST00000555612 FAM120AOSQ5T036 256 aa6.63□□□□□ -1.35
SYNE2-220ENST00000555612 DMRTC2Q8IXT2 367 aaPredicted RBP6.63□□□□□ -1.35
SYNE2-220ENST00000555612 SFTA2Q6UW10 78 aa6.63□□□□□ -1.35
SYNE2-220ENST00000555612 KLK9Q9UKQ9 250 aa6.63□□□□□ -1.35
SYNE2-220ENST00000555612 IGLV3-9A0A075B6K5 115 aa6.62□□□□□ -1.35
SYNE2-220ENST00000555612 A0A087WWC5 75 aa6.62□□□□□ -1.35
SYNE2-220ENST00000555612 TRAV13-1A0A0B4J241 112 aa6.62□□□□□ -1.35
SYNE2-220ENST00000555612 NTF4P34130 210 aa6.62□□□□□ -1.35
SYNE2-220ENST00000555612 LHFPL1Q86WI0 220 aa6.62□□□□□ -1.35
SYNE2-220ENST00000555612 RFNGQ9Y644 331 aa6.62□□□□□ -1.35
SYNE2-220ENST00000555612 TRAV8-1A0A0A6YYK1 113 aa6.62□□□□□ -1.35
SYNE2-220ENST00000555612 IGHV4-59P01825 116 aa6.62□□□□□ -1.35
SYNE2-220ENST00000555612 ADMP35318 185 aa6.62□□□□□ -1.35
SYNE2-220ENST00000555612 PAX9P55771 341 aa6.62□□□□□ -1.35
SYNE2-220ENST00000555612 CADP27708 2225 aa6.62□□□□□ -1.35
SYNE2-220ENST00000555612 IGHV3-16A0A0C4DH30 117 aa6.62□□□□□ -1.35
SYNE2-220ENST00000555612 GAGE12JA6NER3 117 aa6.62□□□□□ -1.35
SYNE2-220ENST00000555612 GHRHP01286 108 aa6.62□□□□□ -1.35
SYNE2-220ENST00000555612 LINC00614P0C842 121 aa6.62□□□□□ -1.35
SYNE2-220ENST00000555612 FOXL1Q12952 345 aa6.62□□□□□ -1.35
SYNE2-220ENST00000555612 GAGE1Q13065 139 aa6.62□□□□□ -1.35
SYNE2-220ENST00000555612 GAGE4Q13068 117 aa6.62□□□□□ -1.35
SYNE2-220ENST00000555612 GAGE5Q13069 117 aa6.62□□□□□ -1.35
SYNE2-220ENST00000555612 GAGE13Q4V321 117 aa6.62□□□□□ -1.35
SYNE2-220ENST00000555612 NMSQ5H8A3 153 aa6.62□□□□□ -1.35
SYNE2-220ENST00000555612 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP6.62□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms