RNA–Protein interactions for RNA: ENST00000552909.5

LIMA1-216, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 2,162 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-216ENST00000552909 SIGMAR1Q99720 223 aa6.15□□□□□ -1.43
LIMA1-216ENST00000552909 TMEM167BQ9NRX6 74 aa6.15□□□□□ -1.43
LIMA1-216ENST00000552909 IGHV1-24A0A0C4DH33 117 aa6.14□□□□□ -1.43
LIMA1-216ENST00000552909 H3BUT2 72 aa6.14□□□□□ -1.43
LIMA1-216ENST00000552909 IGLV2-8P01709 118 aa6.14□□□□□ -1.43
LIMA1-216ENST00000552909 GATA4P43694 442 aa6.14□□□□□ -1.43
LIMA1-216ENST00000552909 RAB31Q13636 194 aa6.14□□□□□ -1.43
LIMA1-216ENST00000552909 ZNF146Q15072 292 aa6.14□□□□□ -1.43
LIMA1-216ENST00000552909 PSG5Q15238 335 aa6.14□□□□□ -1.43
LIMA1-216ENST00000552909 GDF5OSQ5U4N7 250 aa6.14□□□□□ -1.43
LIMA1-216ENST00000552909 SLC35E4Q6ICL7 350 aa6.14□□□□□ -1.43
LIMA1-216ENST00000552909 ZNF497Q6ZNH5 498 aa6.14□□□□□ -1.43
LIMA1-216ENST00000552909 STPG3Q8N7X2 389 aa6.14□□□□□ -1.43
LIMA1-216ENST00000552909 LINC01356Q8N9X3 169 aa6.14□□□□□ -1.43
LIMA1-216ENST00000552909 OR5A1Q8NGJ0 315 aa6.14□□□□□ -1.43
LIMA1-216ENST00000552909 CHCHD1Q96BP2 118 aaKnown RBP6.14□□□□□ -1.43
LIMA1-216ENST00000552909 C1orf159Q96HA4 380 aa6.14□□□□□ -1.43
LIMA1-216ENST00000552909 URB1-AS1Q96HZ7 61 aa6.14□□□□□ -1.43
LIMA1-216ENST00000552909 IGF2BP2-AS1Q96M15 143 aa6.14□□□□□ -1.43
LIMA1-216ENST00000552909 JMJD8Q96S16 334 aa6.14□□□□□ -1.43
LIMA1-216ENST00000552909 SSBP3Q9BWW4 388 aaPredicted RBP6.14□□□□□ -1.43
LIMA1-216ENST00000552909 MAP1LC3CQ9BXW4 147 aa6.14□□□□□ -1.43
LIMA1-216ENST00000552909 IGHV3OR15-7A0A075B7D8 119 aa6.14□□□□□ -1.43
LIMA1-216ENST00000552909 A0A0G2JLM5 398 aa6.14□□□□□ -1.43
LIMA1-216ENST00000552909 SH2D7A6NKC9 451 aaPredicted RBP6.14□□□□□ -1.43
LIMA1-216ENST00000552909 HAX1O00165 279 aa6.14□□□□□ -1.43
LIMA1-216ENST00000552909 CRLF1O75462 422 aa6.14□□□□□ -1.43
LIMA1-216ENST00000552909 LHBP01229 141 aa6.14□□□□□ -1.43
LIMA1-216ENST00000552909 COX8AP10176 69 aa6.14□□□□□ -1.43
LIMA1-216ENST00000552909 ZFP36P26651 326 aaKnown RBP6.14□□□□□ -1.43
LIMA1-216ENST00000552909 CFHR2P36980 270 aa6.14□□□□□ -1.43
LIMA1-216ENST00000552909 C2orf91Q6ZV80 131 aa6.14□□□□□ -1.43
LIMA1-216ENST00000552909 GCSAMQ8N6F7 178 aa6.14□□□□□ -1.43
LIMA1-216ENST00000552909 DEFB108BQ8NET1 73 aa6.14□□□□□ -1.43
LIMA1-216ENST00000552909 OR10AG1Q8NH19 301 aa6.14□□□□□ -1.43
LIMA1-216ENST00000552909 WFDC12Q8WWY7 111 aa6.14□□□□□ -1.43
LIMA1-216ENST00000552909 SSBP4Q9BWG4 385 aaPredicted RBP6.14□□□□□ -1.43
LIMA1-216ENST00000552909 NPFFR1Q9GZQ6 430 aa6.14□□□□□ -1.43
LIMA1-216ENST00000552909 HEYLQ9NQ87 328 aaPredicted RBP6.14□□□□□ -1.43
LIMA1-216ENST00000552909 RNF7Q9UBF6 113 aa6.14□□□□□ -1.43
LIMA1-216ENST00000552909 SLC25A10Q9UBX3 287 aaPredicted RBP6.14□□□□□ -1.43
LIMA1-216ENST00000552909 DNHD1Q96M86 4753 aa6.13□□□□□ -1.43
LIMA1-216ENST00000552909 PPIAL4EA0A075B759 164 aa6.13□□□□□ -1.43
LIMA1-216ENST00000552909 PPIAL4CA0A0B4J2A2 164 aa6.13□□□□□ -1.43
LIMA1-216ENST00000552909 SRRM5B3KS81 715 aa6.13□□□□□ -1.43
LIMA1-216ENST00000552909 B4DSR2 109 aa6.13□□□□□ -1.43
LIMA1-216ENST00000552909 OR5AL1P0C617 328 aa6.13□□□□□ -1.43
LIMA1-216ENST00000552909 PPIAL4FP0DN26 164 aa6.13□□□□□ -1.43
LIMA1-216ENST00000552909 PRDX2P32119 198 aa6.13□□□□□ -1.43
LIMA1-216ENST00000552909 CEACAM3P40198 252 aa6.13□□□□□ -1.43
LIMA1-216ENST00000552909 CAMPP49913 170 aa6.13□□□□□ -1.43
LIMA1-216ENST00000552909 BRWD1-AS2P59051 145 aa6.13□□□□□ -1.43
LIMA1-216ENST00000552909 SMAGPQ0VAQ4 97 aa6.13□□□□□ -1.43
LIMA1-216ENST00000552909 EIF4EBP1Q13541 118 aaPredicted RBP6.13□□□□□ -1.43
LIMA1-216ENST00000552909 TEPPQ6URK8 271 aa6.13□□□□□ -1.43
LIMA1-216ENST00000552909 LINC00173Q6ZV60 143 aa6.13□□□□□ -1.43
LIMA1-216ENST00000552909 MIR17HGQ75NE6 70 aa6.13□□□□□ -1.43
LIMA1-216ENST00000552909 PRIMA1Q86XR5 153 aa6.13□□□□□ -1.43
LIMA1-216ENST00000552909 CD177Q8N6Q3 437 aa6.13□□□□□ -1.43
LIMA1-216ENST00000552909 NUP35Q8NFH5 326 aa6.13□□□□□ -1.43
LIMA1-216ENST00000552909 C5orf30Q96GV9 206 aa6.13□□□□□ -1.43
LIMA1-216ENST00000552909 GRAMD2BQ96HH9 432 aa6.13□□□□□ -1.43
LIMA1-216ENST00000552909 GTSF1LQ9H1H1 148 aa6.13□□□□□ -1.43
LIMA1-216ENST00000552909 PLEKHA3Q9HB20 300 aa6.13□□□□□ -1.43
LIMA1-216ENST00000552909 MBNL3Q9NUK0 354 aaKnown RBP6.13□□□□□ -1.43
LIMA1-216ENST00000552909 HIF1ANQ9NWT6 349 aa6.13□□□□□ -1.43
LIMA1-216ENST00000552909 PSG11Q9UQ72 335 aa6.13□□□□□ -1.43
LIMA1-216ENST00000552909 LSM4Q9Y4Z0 139 aaKnown RBP6.13□□□□□ -1.43
LIMA1-216ENST00000552909 SELENOKQ9Y6D0 94 aa6.13□□□□□ -1.43
LIMA1-216ENST00000552909 PSMB11A5LHX3 300 aa6.13□□□□□ -1.43
LIMA1-216ENST00000552909 PRSS46E5RG02 174 aa6.13□□□□□ -1.43
LIMA1-216ENST00000552909 PSPNO60542 156 aa6.13□□□□□ -1.43
LIMA1-216ENST00000552909 LIPFP07098 398 aa6.13□□□□□ -1.43
LIMA1-216ENST00000552909 MSMBP08118 114 aa6.13□□□□□ -1.43
LIMA1-216ENST00000552909 CR1LQ2VPA4 569 aa6.13□□□□□ -1.43
LIMA1-216ENST00000552909 LYPD2Q6UXB3 125 aa6.13□□□□□ -1.43
LIMA1-216ENST00000552909 ATP5L2Q7Z4Y8 100 aa6.13□□□□□ -1.43
LIMA1-216ENST00000552909 OR10W1Q8NGF6 305 aa6.13□□□□□ -1.43
LIMA1-216ENST00000552909 OR52E5Q8NH55 327 aa6.13□□□□□ -1.43
LIMA1-216ENST00000552909 OR4A5Q8NH83 315 aa6.13□□□□□ -1.43
LIMA1-216ENST00000552909 VSTM2AQ8TAG5 236 aa6.13□□□□□ -1.43
LIMA1-216ENST00000552909 Q8TCH9 128 aa6.13□□□□□ -1.43
LIMA1-216ENST00000552909 ZNF355PQ9NSJ1 428 aa6.13□□□□□ -1.43
LIMA1-216ENST00000552909 METRNQ9UJH8 293 aa6.13□□□□□ -1.43
LIMA1-216ENST00000552909 IGKV1D-17A0A075B6S4 117 aa6.12□□□□□ -1.43
LIMA1-216ENST00000552909 GGTLC3B5MD39 225 aa6.12□□□□□ -1.43
LIMA1-216ENST00000552909 ACTL6BO94805 426 aa6.12□□□□□ -1.43
LIMA1-216ENST00000552909 AVPP01185 164 aa6.12□□□□□ -1.43
LIMA1-216ENST00000552909 RPL24P83731 157 aaKnown RBP6.12□□□□□ -1.43
LIMA1-216ENST00000552909 HSD52Q0P140 79 aa6.12□□□□□ -1.43
LIMA1-216ENST00000552909 C1orf229Q6ZS94 237 aaPredicted RBP6.12□□□□□ -1.43
LIMA1-216ENST00000552909 FAM231DQ6ZW35 169 aa6.12□□□□□ -1.43
LIMA1-216ENST00000552909 NHLRC2Q8NBF2 726 aa6.12□□□□□ -1.43
LIMA1-216ENST00000552909 H1FXQ92522 213 aaKnown RBP6.12□□□□□ -1.43
LIMA1-216ENST00000552909 GALMQ96C23 342 aa6.12□□□□□ -1.43
LIMA1-216ENST00000552909 THYN1Q9P016 225 aa6.12□□□□□ -1.43
LIMA1-216ENST00000552909 SPCS1Q9Y6A9 102 aa6.12□□□□□ -1.43
LIMA1-216ENST00000552909 A0A1W2PRE2 83 aa6.11□□□□□ -1.43
LIMA1-216ENST00000552909 H0Y8G0 127 aa6.11□□□□□ -1.43
LIMA1-216ENST00000552909 F2RL2O00254 374 aa6.11□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 60.3 ms